NONHSAT126917
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126917 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2601 nt |
Genomic location |
chr8+:63951612..63954212 |
Exon number |
1 |
Exons |
63951612..63954212 |
Genome context |
|
Sequence |
000001 AAACGCCTGG GGCGGGTACC GGGTGGTCTC CGCGTCCTTC CCTTTCAACT GTTACGTCGA TGTGGACTTC AGTCACCCGT 000080
000081 ACAAAGCTGG GCTGGCCAAC CCAGGTCCTC GAGAGGGGAG GTTGGGTGTC CCCGGCCGAG TTTGGTAACC AGGCAGCGGG 000160 000161 GAGGCTGGCA GGGGATTCTA GAAGGCGCCT GAGAACTGCG CGCCAACCGC ACCGCCCCCT TGAAGGTCGG GGCCCTATCT 000240 000241 CCGGGAATGG TGACAACGTT CGCTGTACGG ACAGCCTGTG CCCCTGAATG TGAATGTCCA CACTTGCTAT TTGGGGGGTC 000320 000321 GCGGCATCTG TAGGAAGTGA AGACGGGACG GCGATAGGAA CACACGCACA GGCGCATCAC TAGGGTCAGA ACTGGGCCAA 000400 000401 CTCCGGGCGT CTACTTTGAA GCGGGCACGC CCAGGCCACG CCTGCAAACG GCGTCAGCTT CCTCTGATCA ACCGCGGTCA 000480 000481 GCGCCATCCA CCGACCACCA CTAAGCCTAT CCACCGGGGC AGAAAAGATG ACTGGTTCCT ATTCGTTAAA ACTGTTGATT 000560 000561 GTTCCTAAAT ACATGGATAT ATAGCTTGTA CTCAGTGAAA GTTTCCATCT ATAAGGGCCA ACTGAAATTC AGCATAAAAC 000640 000641 AAGAATATTT GAAAACCTGC TACATCAATG CTCAGTATTA AGGGTGAAAA CGTAAATTGG ACAGTCTTTT TCACAAGAGG 000720 000721 TTTAAATTCA GTAAGGAAAA AAGGCAGAAA GCGTGACTCG TAGAGACAAC AGGAACAATT TTAGCATGTT GCAAGAAGAG 000800 000801 TAAATGCAGT GAATAGTCTG GTTTAACAAG AAAATAACGC TTCTGTAGAA GGGTGTGGTG AGAGGTAAGC AACAAAGGAT 000880 000881 GTGATGAAAG ACATGAAAGG GCCGAGCTGG TTTTGagcat gattaaatag acaagtagcc ttgtaaatat gaacttgtgg 000960 000961 tgccagaata attgactatc cacataggaa aaatttttta cccggcgtta cacacaaaaa taaactcgag gtgaagtgca 001040 001041 tatgtaaata cgaaagcaaa atattatact ttgataagaa aatatataaa tatatcttcc taacttaggc tgttggaaga 001120 001121 gtttcataaa acattaaaaa taaaaatgtt aattaaaaat tgactatata agaaaattaa agttaaagca caaacttgga 001200 001201 aaatatagtt ataaaatata aagtatttct aaaatatgcg aagaaataat aagaaaaatg acacaataga aaaatggaaa 001280 001281 aagaatgtga aaagcaAACC AAACTTTCTG TAGTCATCAG AAAAATGCAA GATAATATGT CACATCCATT AGACTGTGTA 001360 001361 GAAAAACAGC CTGTTTCCTG GCAAGAGTGA CACCATCTTG AAGCAAAACT ATCCTGGGGA CTGATGTTTG ACCCACAGCA 001440 001441 TACCGAGGTG TTCTGCAGCA AAGGTCTTTA AACAATGCTC ATAACATATA TAACCCCTCA TAAAGATGCT TATCTAACGT 001520 001521 CCCCAGTGAT CACAATAGTC TAAGAGCTAA CTAGTTGCAC TTGTCTTTAC CCTAGAGGCT TGCTAAATAA AGCATACTTT 001600 001601 CTGGAGGGCA AGTGcagggg tcgcttctgt ttgtctctac taagtatttc tttctgagaa attcgattgg tcagcctctt 001680 001681 tggtctccca gcttcctcca tctttggaag caggtttCTG Taaattgaca aaaatgtaag cctttgataa taagtcaagg 001760 001761 atgtagtaaa atgacagttc tctgcatttc ttgtggaatt gtaattatta taactatttt tgagaaaaat taagcaatat 001840 001841 ctggtaaagg tgaagatcta aatgttctgt aacccagtac attctggata taagtgtgta cctagattaa tgcgtgctca 001920 001921 tgtgaacaaa aaaaatatgt gtaagtatgc tctttggagc atctttttgt aatagtaaaa tattaaatgt aaatgaccaa 002000 002001 tgtcataaag tttttcccat gtgttttctt ctagtaattt tacagtttca ggtctcatat ttaactgctt aattcacttt 002080 002081 agttgatttt tgttcatggt gagagataag ggtctaattt ccagattttc caacactgtt tattgaagaa gatgcccttt 002160 002161 ccccattgtg tgttcttggc acctttgtca aaaatcaatt gacagtatat gtattggttt atttttgggc cttctatcct 002240 002241 agtgcattgg tcaatgcccg taattttatg ccagtaccat gctagtttga ttaaattact ataattataa tatgtcttga 002320 002321 aatcagagta tgatggcttc aactttgatt ttttttctca agattgtttt aggtatgtgg ggtcttttgt ggtttcatac 002400 002401 aaatttaagg atttttttac atttatgtga aaaaagtgac actggaattt tgtagagatt acaatgaatc tgtatattgc 002480 002481 cgtaggtcag tcatatagac atgttcccaa ttttaattct tccaatccat gaacatgaga tatctttcca tttgcttgta 002560 002561 ttttcttatt tacttgtatt tttatgtgtt ttatagtttt c |
Predicted Small Protein
Name | NONHSAT126917_smProtein_59:286 |
Length | 76 |
Molecular weight | 8243.1853 |
Aromaticity | 0.0533333333333 |
Instability index | 48.4466666667 |
Isoelectric point | 11.3600463867 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.041009335127 |
Amino acid sequence | MWTSVTRTKLGWPTQVLERGGWVSPAEFGNQAAGRLAGDSRRRLRTARQPHRPLEGRGPI SGNGDNVRCTDSLCP |
Secondary structure | LLEEEEEELLLLLLEEEELLLEELHHHHHHHHHHLLLLLLLHHHHHLLLLLLLLLLLLLL LLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |