NONHSAT126940
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3240 nt |
Genomic location |
chr8+:64378407..64388040 |
Exon number |
4 |
Exons |
64378407..64378555,64379700..64382504,64384928..64385060,64387906..64388040 |
Genome context |
|
Sequence |
000001 AACTCTGGAG GTGGAGGTTG CAGTGAGCTG AGATCATGCC ACTGCACTCC AGCCTGGGTG ACAGAGTGAG ACTATGTCTC 000080
000081 AAAAAAAAGA AAGAAAGAAA GAAAGAAAAA TTTGAAGTAT AGAGGGGAAT CACAAAAATT CTAAATGGTA ACTCATGTCA 000160 000161 GGAACCTGAA AGTCAAGTCT TCACTTCAGC ATTGGGAAGT ATATGAAACT GTTTTCGGAC CACACAACTC TGTGAGCTCA 000240 000241 TCGCTAAGAA TTGGTATGCA AGGTCTTCAG AAGGGTAGGC AATTTGTAAA CTCCTTTTGA CTTAGCTGGT AAGACAGAAA 000320 000321 GTTCTTTTTT CATGGCTAAA TGATACTTGA GAAAAGAAAA AATGTGGTGA AGCTGAATGT ATCTAGTTGA AATAAAAATG 000400 000401 CCTACCTTTC TCCTGCATAG GCAAAATATA CTACTTACAA GAAAAAAAGG AATTTATGAA TAGAAATAGA ATCAGGTCAC 000480 000481 AGTGCATTTC CTAATTCTCC ACTGGATTTT ATTACTCAAG CACTGTATTT TTACCTTTTA TCATAGCTGT CATTCGTCCT 000560 000561 TGTACTTTAG ATAGCAGCTT ATCAACCCTT GTTATATCCT TACCTTCTTT AGGGTGATGA TCTTATCTTT ATTTTTGACC 000640 000641 ACACTTCCTG TGCCTGCCCC TTTTCTTACA TCAATTTCTG TTCCACTTGG GATTTTGTAC TCACAGATGT GACATGAATA 000720 000721 TTTATGAGAT TAAAGTGAAT GGTCCAACAT CAATTCAGAA AAATTTTGAT CCATTCGTCC AAATTATTTA AAATATTCCC 000800 000801 TTTCTAATTG AGGCAGCAAG GCCTCTAGCT TAGTGCTCAT TTTCCCTCTC TAAGCATATT CATGCCATTA GGGTATTAAT 000880 000881 TTCTTCTAAA CTAAAGCTCT TATCTCCTCA TAATTCATTA TGTCTGTTTT TGATTCGCAC TATCATTGTG GTCTCTCAAC 000960 000961 TTACTCCCGT TAACACAGTC ATTTTGGTGG CTTTTATAAT ACCTCCTCTG TTGTTCTTCA AATTTTGCCT AAATAGGCAA 001040 001041 TAACTTAAAT GAAAAAGTGT TCATGAGTGA GCCAGTGAGC TCAGAAATTT GGAACCTTTT TGCCATGGAG GGTGATGGTG 001120 001121 AGCTTAGTGA TAACAAGAAT TTCCCAATTA TGGCATCTAC CTTTCTAATC ATCTCTCCTT CCATGTGATA CTGTTTTTAT 001200 001201 ATAGTTTGTT TTGCCTGCCT CCCTCCCTTC CCATCTCTCT TCTTTCCTCC CTTCCTTCTC TCCTTTCCTT CCACTCTTCT 001280 001281 TTCCTTTATG GGAAAAACCA TTCTAAATCC TTCAAATTGT GGTTTGAGTT TACAGTCTTT TATTGAAATT ACATGTTGGT 001360 001361 ATGCTAGGAG TATATGAAAG CTTTTTTTCC AATTTGCAAA GAATGTTTAT ATGATTTTAT TATTTTTATA TGATTTTTGT 001440 001441 ATTAAAATCA TCCCAGATAT CCCCAAAATA GAATGCAAAG TTTACATTTT AAATTTACTT TGAAATTTTA AATAAATTTT 001520 001521 CTTCTAAGTT GTCTTTGGAT TACATATCCA GACAGATTGG AGGCATCAAA ATACTTCCCA CTCCTTTTTC AATGTTGTTA 001600 001601 GGGATATTGC TATGACATTT TTGAGAAGTA TTCGAAACAA CTCTATTAAG ATAAGCTCCT TTTCTTTATT GTCTTCATCT 001680 001681 TATATCTCTG GCTGTCAATG AAATTCTATC ATTTCCCACT CAAAGCCCAA TTGATCTCTG GAAGGAGGTG GGGTGTGCCC 001760 001761 TTGTATGAGC TCTTAAGAAT TTATTTAGCA TTTTTTTCTA GCTCTTCCAT CAGTGAAATC AAGATGGTAG CTGAAATTTA 001840 001841 CCACGGTGGA GGATATTTAC ATCACAGAAA TTGGCAAAGG CTACAAATAA GTTTAATTTT TTTTTTTTTA GAACTCGTTA 001920 001921 AGTATGTACC AGCACACCCT GTAAGGTTGA TTGATGCTTG ATCTAGGTGT CTTCCGTATG CTTTGTGTGT TACTCCTGTG 002000 002001 GCTTTACCAG CTATTATGCA TTAGTCTCTG GGGATAAGGG AAGTAATAAA CCTTTGTCCC AGGTCTCATA AATAGCTTGG 002080 002081 TTATTAATCA AATGATCATT TGGTCTGGCT TCCTTTGTTC GGTCCTATGC TTGTAAGTAT GGATGTGTTA GCTCTAGACA 002160 002161 GAACCATAGA TAAGGGAGCT AAAGCCCAGA GTGATTAATG ACTTACAAGG TCACAATTCT AGTTAGAGGG AAAGATGCTG 002240 002241 GGACAAGAAT CTGGGTTTTC TGAGTCCCAG GTAGGTTTTG TTGCTGTTAT ACAACTCTCT AATAATTTTC AAAAAATCCT 002320 002321 AAATCATAAA TATTCCATTG TAATAAGCTT CAGAAAGCAT TGCAAGCCAC AGATTTAGCT CTAATACTAT TAATCTTTGC 002400 002401 TTTTTTTCTA ATCTAAAAAC TAGGATACAT TAAGAAAAGT AGAAAATGTA AAAATATTGG TAAAAAACCA AAACTCCTAA 002480 002481 CAAATTAATA TATATATGTT AAGAGAGACA TACGTTTAAA CAATTTACTA TCATCTGTCA ACTTTTAAAG GAATGCCTGG 002560 002561 ATCTAGCTCT TATGACTTTC AATCGAAGTG ACACAATTTT TCCAGTAATT TTAACAGTTT TCTCCCAGCT TGCTTGTTAA 002640 002641 AGAAATCTGT AACATCTTTA GCAAGAAACA GAAAGACAGA GGGCAGCATG GGACCAGAGT GCAGCTGTCC TTCAGAAGAA 002720 002721 CCTGACTGTA CAACTTGCAC ATCTGAAGAG GTAGCCAAGA AAATAGAGAA AAGAATGGGA AGTGGATCTA CCCACATCCT 002800 002801 CTCCCATCCC CTCCAGAAAG AAATGCAGCA TCTCTTTCTC ATTGTTTAAG AAGAAAAGGG GGATCTCGGA GACAAAGCCA 002880 002881 ATGAAGGATA AATGAGTGCT CTGCCAGTTC AAAGTCAATG TGAAGATTGG ATGGGGAAGC GTGCGGAGCT CAGAAGCATT 002960 002961 TTTTTTTTTC CAGAGCAAGA GAAAATCCAG TGACTGAAAA AGAATAAGAA GAAAAACACT GACCAAGGCA ATAATTCCAA 003040 003041 GAAGTCAAAA ATTAAGGCCT GAGAGGAAGA AGGCAGACTA AAGAAAGTAG GAAAGATGCA AGGAGAAAGA CAGCCATCTG 003120 003121 CATACCAGGA AGAGGGCCCT CACCAGACAC TGGATCTGCT GCATCCTTGA TCTTGGGCTT CCAACCTCTA GAACCATGTG 003200 003201 AAATACATTT CTGTTGTTTA AACCAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT126940_smProtein_1697:1960 |
Length | 88 |
Molecular weight | 10325.0713 |
Aromaticity | 0.172413793103 |
Instability index | 57.7518390805 |
Isoelectric point | 9.81719970703 |
Runs | 13 |
Runs residual | 0.0111658456486 |
Runs probability | 0.0570162923105 |
Amino acid sequence | MKFYHFPLKAQLISGRRWGVPLYELLRIYLAFFSSSSISEIKMVAEIYHGGGYLHHRNWQ RLQISLIFFFLELVKYVPAHPVRLIDA |
Secondary structure | LEEELLLLLEELLLLLLLLLHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLLLLEELLHHH HHHHHHHHHHHHHHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL HHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooo TTTTTTTTTTTTTTTTTTiiiiiiiii |