NONHSAT127158
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127158 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2362 nt |
Genomic location |
chr8+:71383369..71397922 |
Exon number |
5 |
Exons |
71383369..71383704,71383711..71384080,71390328..71390398,71392957..71393543,71396926..71397922 |
Genome context |
|
Sequence |
000001 GTTTTCTAAG ACCTCCCTGG CCCGCCATAC GCCGATCCTG AACCTACGAA AACCCAAGAC TGCGGGCACG GTGGCTCATG 000080
000081 CCTGTAATCC CAGCACTTTG GGAGGCCGAG GCGGGCAGAT CACGAGGTCA AGAAGTCGAG ACCAGCCTTG CTAACATGGC 000160 000161 GAAACCCTGA CTCTACTGAA AATACAAAAA TTAGCTGGGC GTGATGGCGT GCGCGCCTGT AGTCCCAGCT GCTCGGGAGG 000240 000241 CTGAGGTAGG AGAATCGCTT CAATCCGGGA GGTGGAGGTT GCGGTAAGCA GAGATTGCGC CACTGCACTC TAGCCTGGCG 000320 000321 ACAGAGACTC CTTCAAAAAC AACAACAACA ACAACAACAA AACAAAACCT CCCAAGACCC TAGTGGGCAG ACACACAGCC 000400 000401 AGCCAGACAT GGAGAGGAGC ACATTAGCAG AAGAAGACGC AAGTGGCTGG TCCTCGAGAG GACGTTGAGA GGAGCATGCC 000480 000481 AGCAGAAGAG CACACAACGA CAGGCACCGA CACACCACCG GCAGGCCATG CACCAGCAGA ATGATGCGGA GTTTGACGGG 000560 000561 GCAGTCAGAG AAGAGCCTGG GCCGCCAAGG GGCCCGACTC CAGGGGAAAA CCATCTCCCT TCTGGCTCCC CCATCTGCTG 000640 000641 AGAGCTACTT CTACTCAATA AAACCTTGCA CTCATTCTCC AAGCCCACGT GTAATCCGAT TCTTCAGTGT CACCTCCCAA 000720 000721 ATGTGGAAAT GCATTGTCTT TCTTCTTTCC TAGGCCAGTG GTCCTCAAAC TTGAGCAGGT TTAAGCATGG TCATAGCAGA 000800 000801 ATCAATGTGC TCACCCCATC ATGAAAAAAA AAATGTGTTA ATGAATTGAT TACTACTTTG AGTGTGCCAT ATTTTAAAGA 000880 000881 CGAAGAGAAA CTAATCAAGT TAGTTTTTAT TTGGTCAGAG GCTTGTTTGT GCCTGCTTAT CTAAAGTTAT AAAGGCCCCA 000960 000961 AATATGGCTC CGTGTTGCAG AGGGACTGTC TCTTCTTATA TCGACAGAGC CCATATTCAC AATGTATCAC ACTTACCTCG 001040 001041 ATGTATTGTC TGGAGTTTCC TAGGCTGTGT CCTTTGCCTG GAATGCTCTC TCTTGCTGGC TGGCTTCTTC CCACCAGCTG 001120 001121 TGGCCAGGGC TGCTCCTTAT TCCTTCATCA AAACTCCGTC TGCTGGGTGT GGTGCCTCAC ACCTGTAATC CCAGCACTTT 001200 001201 GAGAGGCCAA GGTGGGAGTA TCGTTTGAGC CCAGGAGTTC AAGACAAGCC TGGACAACAG AGCAAGACCC TGTCTCTACC 001280 001281 AAAGAAAAGA AAAGAAAAGA AAAGAAACAG CCACTTTCTC TTCCATGAGC CAGTTTATGT TTTCTTCACG GCATTTGTTA 001360 001361 CAAATCACAA ATGTGGAGGA AAAATGAAGG CAAAGCAAAA TAACAGGCAA GTCTGAAAAC AAAAGTGTTG CCAGTCACGC 001440 001441 TAAGCCTCAG GCACGCATTC TGAATGAAGC TAAAGTTTAA AGTCCCCTCT GATAGATTTG TGACTTAAAT GTCCACACTA 001520 001521 GCAAGTGTGT TTCTCACATG GAGAAGTAGC ACGATTTTAT GTCAGGAAAG GGATGAGAAC ATGCTTCTTG AACACATACA 001600 001601 ATGCTGAAGA CATTTCCTGG AAAACCATTG GCCTTTGCTT AGGACAGTTG CATCACACAG AGATGTTTGT GGTTCAGATT 001680 001681 TATAAGAAAC ATGGGAACTG AAGCCAAAGC ACTACTTTTG CTCAGTATAA CCAGGTGCCA GATCTAAAGT GTTAGGCAGG 001760 001761 TTCCTATATG TATGTTAGAA AAAAGTTGCC CAAGTTTTGG ACAATTCCTT TTCCATCTCT CTTACAAGTC AACAAATCGA 001840 001841 AGCAATAAAC TATTCTCTGA AGAAAACAAA TTTATTTGGT TGATTCAAAC TTTTAATGAG ACTATTACTC CCCTGTGTGC 001920 001921 CTTTCCTTTC TCTGGTTCTA GAAATACATC TAGAAAGGGG GAAAATGTTA ATATATTTTC TACTGACTTT ATATCACAAA 002000 002001 TGCTTAGCTT AGAGGGTGGA CTCTGAGGAA CAGTGTCCTT TCCAAATATT ATAAAACTTT GTGTTCATTC TGGAAAAACA 002080 002081 AACAAAATTA ATCACAATGA TTTCCTGCTT TGGAGCAATG AGAAATGGGA GGGAAACTTC ACCTTTTCAT AGCTTTTGAT 002160 002161 GTTTGCACCA TGTGAATTAC CCACCCCCAA ATTTAAAATA CGAATTTTTG AAAAAGTGTT TACCTCTGAG AAGAGAAACT 002240 002241 AGTAGTGAAG AATGAGGAGC TGTAGATTTT TAACGATTCT GATGTATTTG CGTTTTTCCC AATGTTCATG AATAAATAAA 002320 002321 TGTGCATTCA TAATTAAAAA GAATAAACAA CCTGGAAAAA AC |
Predicted Small Protein
Name | NONHSAT127158_smProtein_1040:1201 |
Length | 54 |
Molecular weight | 5867.0686 |
Aromaticity | 0.11320754717 |
Instability index | 55.058490566 |
Isoelectric point | 6.48040771484 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0773420479302 |
Amino acid sequence | MYCLEFPRLCPLPGMLSLAGWLLPTSCGQGCSLFLHQNSVCWVWCLTPVIPAL |
Secondary structure | LEELLLLLLLLLLHHHHHHHHHLLLLLLLLEEEEEELLLEEEEEEELLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTi |