NONHSAT127323
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127323 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2859 nt |
Genomic location |
chr8+:77034792..77047325 |
Exon number |
2 |
Exons |
77034792..77035901,77045577..77047325 |
Genome context |
|
Sequence |
000001 ATTTAAGAGA CTCTTTTCCa attaaaaaaa taaaataaat tGTTACTATT TGTTCCCTCT CTAAAGGGTC TCTGGTATAG 000080
000081 TAGACTCTTT TGTCTTCTAT TTCCAATTTA TTATGAATGT CATCTGCCAA TGATCTTTGA CCCACATGTA CCACTGAAAT 000160 000161 TATGTCAGTG CTTGAGGAAA AAACCACAGT ATCATTATTA GTTATAATTT TTTTCTAACT GCATTACTAA TATAATATAC 000240 000241 ACTTTCTATT CTGTGTAAAA ATTCATATTT TGCTAGAGGA AGTCTACATT AATTAAAATA TACAAAAGAC AATGTAAGGA 000320 000321 GAAATCATTT TATCCATAGC ACTTTCATAC ATTTTATGGT TATATCTTGC AACAATAGAA TCTGTTGTGA TTTCAGCTCA 000400 000401 CAATATCAAA GAATACAACA ATGATGGCAT CCAGTAGTGT TGTGAAGAAT TGTTTTGGAT AATTATTTTC TGACCCAAAG 000480 000481 TAAAAAGTTT CTCAAATTAG ACAGCCATGA AAGTAAAAAT AAAATGGAAT TATATTGAAA ACGATTAAAC ATTCTCTTCT 000560 000561 CCTTTCAAGC TTCTAAATAA AACAACTCAA AAATAGTACA CAAAAAAGAA ACTCATTTTC AGTGTTTTTG CATATTTCTC 000640 000641 AAATAAATAA GATGACATCT AGAAAATGGA ATTGCTGTAG CAAAACTGCT TTTTGTTCTG TGAAAGCCCT TGCTTTTGTA 000720 000721 ATTGTAAATG AAGCTGTTTC ATCTGGTTTA TATGCTGCTT TTCCCACTGT TGCAGCTTAG GGCAATACGA ATGATTAGTT 000800 000801 GCCTGATTCT GGATTCATAT AGGCTCAACT ATGAGAACTA GACTCAGGCA TTTAAATGAC TGAACTGATG TAAGACCATA 000880 000881 AACCATTCCA GACCATTTAT ACAAATGGAA CCGGCCAGGC ATTTTATCAA ATCTCCCATT ACAGGGAATA GCTCTGTATT 000960 000961 AGCTCCATGC AATTTTTTTA CCTCTCCCAA AATATTGGGG AGGTGGTGCA CCTCCCCaat tatttgggta tggtggtgca 001040 001041 cacctgtagt tccagctagt ggggaagctg aggttggagg atcacttgag accaggatgt caaggctgca ttttGAAAAG 001120 001121 TTAATAACTA ATTCCTTGTC CTAAAGATTG CAAGAGAAAA GGATGGGCTA Caaaaataaa taaataaata aaaataaaaa 001200 001201 aGATGGGCTT CTTTACTCCC TCTTAGATAA ATGTCAACTG ATGTGGAGAA GAAAACATGG TTGGGCAGGT GGGAGAACAC 001280 001281 CCTCAGAAAT GTACAGATTT TACAGGATGC TAAAGAAGTT TGGCACCTTG TCCTCCTGAG GAAAAGAAGC CTAGAATGAG 001360 001361 AAGAAGAGAA TCCCAGAAAA TCAAAAGATG GAGGGAACGT CTGCTTTGAT TTCAATATTA TAGTCCTGAA GTGAGACTAA 001440 001441 GCCTTGGGGA GAAGTGTCAT TTTCTGTACA TTGCTGGGCC AGTAGATTTA AAATGGCTCT GTACATTTTC TAGAAAAATG 001520 001521 GGTCAGATCC TCTCTGCATG CTCCAAGAAA GTTGTGAAAG TTCTTTCAAA ATGAGACAAA GGATTCTTTA AAAGAAGGTG 001600 001601 CTGCACATAG ATTGCCTAGT GTGAAATCAG AAAATAACCC AATTTAATTT TGCAGGTGAC CTTAGAAAGG AAAATGACTG 001680 001681 TTTTAGCACT AAGCTGGGCA GTGTGTTTCA GCAAAGGCCA AGGAAGTTTG GTGCTGATGT TTGGAGATCA GTGGATATGA 001760 001761 AGACGGAACA GCCAATTCCA GCATGGCTGA AGACCAATAA TGAATAACTT CACACTGCTT CCTCATTGAC ATATATACCC 001840 001841 CTTCCgatac agtcctaaat ggaagaaaaa agaatagaaa ttatgaattg agtttacaat ggaaatgact aggaaatgct 001920 001921 ggaagtgact aaatttggcc agaaataatc acattacctt tgatgacatc aggtggaTCA GATTTTAAAA AGAGAATAAA 002000 002001 TGGTTTTTCA AAAAAAAAAC TTATATTTAC TTTAATTGTA CATTAAACAT GTACAATCCC CTCTTCTGGC AATTGCTAGC 002080 002081 AACTGAGTAT AAGATTGGGA GTGAGAAAAT TTCCCAGGAA AAATCAGGGT CCTCACTTGG AAATTCAAAG CAGTAAAACT 002160 002161 AAACAAAAGC TAAAGTTCCT CTCAGTGCAA ATCAGGCAAA AAAAAAAAAA AAATCTAGAA ACAGAAGAAA GGGAATGAAG 002240 002241 ATTCACAGCT AAAAGACAGC ATGACCAAAT GCAAAGAAGG ATTAAAGTAA ATGGCTATAA ACAAGAAAAG AACTATAAGG 002320 002321 TGGTAGGAAA GGGCTTGTGA GGAGGGGATT AGGAAAATGT CCAGTGGAGT TACAAGGAAG ACAGATCCTG ATACTGAAAC 002400 002401 CCATTAGATT CAAGATCACA GATCCATAAG TCCTCTAATA CCTATAGACT aaaatgtgat tggcagacca gtgccatcat 002480 002481 catgtcagca tcaccaggaa gcttgttgga aatgccaaac ctcagggccc accctaggcc aactgaatca gactgtgaat 002560 002561 tttaacaaga accctacatg agtcttacaa acactaaagt ttgagaagGA AGCTGTAATT AATCCACAGA GGAATGCGTG 002640 002641 AGAAAATATg aatttaagtt ctatgtgaat gggaattttg cctgttttat ttgtggctct gtgaatagca tctataatat 002720 002721 tgcctgacac atggtgagta cataataaat atttgttgaa AAAACAATCT ATCTTAATTC CACCTTTATT ATTTAAAAAA 002800 002801 TCAAATAAAA GTACCTTCAG AGTTGATAGT TTAGCTTTTG AATATGAAAG GCAGCCTTA |
Predicted Small Protein
Name | NONHSAT127323_smProtein_2048:2155 |
Length | 36 |
Molecular weight | 3963.4257 |
Aromaticity | 0.114285714286 |
Instability index | 42.6485714286 |
Isoelectric point | 8.09906005859 |
Runs | 5 |
Runs residual | 0.0382566585956 |
Runs probability | 0.0332980038863 |
Amino acid sequence | MYNPLFWQLLATEYKIGSEKISQEKSGSSLGNSKQ |
Secondary structure | LLLHHHHHHHHHHHLLLLEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |