NONHSAT127323

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT127323

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2859 nt

Genomic location

chr8+:77034792..77047325

Exon number

2

Exons

77034792..77035901,77045577..77047325

Genome context

Sequence
000001 ATTTAAGAGA CTCTTTTCCa attaaaaaaa taaaataaat tGTTACTATT TGTTCCCTCT CTAAAGGGTC TCTGGTATAG 000080
000081 TAGACTCTTT TGTCTTCTAT TTCCAATTTA TTATGAATGT CATCTGCCAA TGATCTTTGA CCCACATGTA CCACTGAAAT 000160
000161 TATGTCAGTG CTTGAGGAAA AAACCACAGT ATCATTATTA GTTATAATTT TTTTCTAACT GCATTACTAA TATAATATAC 000240
000241 ACTTTCTATT CTGTGTAAAA ATTCATATTT TGCTAGAGGA AGTCTACATT AATTAAAATA TACAAAAGAC AATGTAAGGA 000320
000321 GAAATCATTT TATCCATAGC ACTTTCATAC ATTTTATGGT TATATCTTGC AACAATAGAA TCTGTTGTGA TTTCAGCTCA 000400
000401 CAATATCAAA GAATACAACA ATGATGGCAT CCAGTAGTGT TGTGAAGAAT TGTTTTGGAT AATTATTTTC TGACCCAAAG 000480
000481 TAAAAAGTTT CTCAAATTAG ACAGCCATGA AAGTAAAAAT AAAATGGAAT TATATTGAAA ACGATTAAAC ATTCTCTTCT 000560
000561 CCTTTCAAGC TTCTAAATAA AACAACTCAA AAATAGTACA CAAAAAAGAA ACTCATTTTC AGTGTTTTTG CATATTTCTC 000640
000641 AAATAAATAA GATGACATCT AGAAAATGGA ATTGCTGTAG CAAAACTGCT TTTTGTTCTG TGAAAGCCCT TGCTTTTGTA 000720
000721 ATTGTAAATG AAGCTGTTTC ATCTGGTTTA TATGCTGCTT TTCCCACTGT TGCAGCTTAG GGCAATACGA ATGATTAGTT 000800
000801 GCCTGATTCT GGATTCATAT AGGCTCAACT ATGAGAACTA GACTCAGGCA TTTAAATGAC TGAACTGATG TAAGACCATA 000880
000881 AACCATTCCA GACCATTTAT ACAAATGGAA CCGGCCAGGC ATTTTATCAA ATCTCCCATT ACAGGGAATA GCTCTGTATT 000960
000961 AGCTCCATGC AATTTTTTTA CCTCTCCCAA AATATTGGGG AGGTGGTGCA CCTCCCCaat tatttgggta tggtggtgca 001040
001041 cacctgtagt tccagctagt ggggaagctg aggttggagg atcacttgag accaggatgt caaggctgca ttttGAAAAG 001120
001121 TTAATAACTA ATTCCTTGTC CTAAAGATTG CAAGAGAAAA GGATGGGCTA Caaaaataaa taaataaata aaaataaaaa 001200
001201 aGATGGGCTT CTTTACTCCC TCTTAGATAA ATGTCAACTG ATGTGGAGAA GAAAACATGG TTGGGCAGGT GGGAGAACAC 001280
001281 CCTCAGAAAT GTACAGATTT TACAGGATGC TAAAGAAGTT TGGCACCTTG TCCTCCTGAG GAAAAGAAGC CTAGAATGAG 001360
001361 AAGAAGAGAA TCCCAGAAAA TCAAAAGATG GAGGGAACGT CTGCTTTGAT TTCAATATTA TAGTCCTGAA GTGAGACTAA 001440
001441 GCCTTGGGGA GAAGTGTCAT TTTCTGTACA TTGCTGGGCC AGTAGATTTA AAATGGCTCT GTACATTTTC TAGAAAAATG 001520
001521 GGTCAGATCC TCTCTGCATG CTCCAAGAAA GTTGTGAAAG TTCTTTCAAA ATGAGACAAA GGATTCTTTA AAAGAAGGTG 001600
001601 CTGCACATAG ATTGCCTAGT GTGAAATCAG AAAATAACCC AATTTAATTT TGCAGGTGAC CTTAGAAAGG AAAATGACTG 001680
001681 TTTTAGCACT AAGCTGGGCA GTGTGTTTCA GCAAAGGCCA AGGAAGTTTG GTGCTGATGT TTGGAGATCA GTGGATATGA 001760
001761 AGACGGAACA GCCAATTCCA GCATGGCTGA AGACCAATAA TGAATAACTT CACACTGCTT CCTCATTGAC ATATATACCC 001840
001841 CTTCCgatac agtcctaaat ggaagaaaaa agaatagaaa ttatgaattg agtttacaat ggaaatgact aggaaatgct 001920
001921 ggaagtgact aaatttggcc agaaataatc acattacctt tgatgacatc aggtggaTCA GATTTTAAAA AGAGAATAAA 002000
002001 TGGTTTTTCA AAAAAAAAAC TTATATTTAC TTTAATTGTA CATTAAACAT GTACAATCCC CTCTTCTGGC AATTGCTAGC 002080
002081 AACTGAGTAT AAGATTGGGA GTGAGAAAAT TTCCCAGGAA AAATCAGGGT CCTCACTTGG AAATTCAAAG CAGTAAAACT 002160
002161 AAACAAAAGC TAAAGTTCCT CTCAGTGCAA ATCAGGCAAA AAAAAAAAAA AAATCTAGAA ACAGAAGAAA GGGAATGAAG 002240
002241 ATTCACAGCT AAAAGACAGC ATGACCAAAT GCAAAGAAGG ATTAAAGTAA ATGGCTATAA ACAAGAAAAG AACTATAAGG 002320
002321 TGGTAGGAAA GGGCTTGTGA GGAGGGGATT AGGAAAATGT CCAGTGGAGT TACAAGGAAG ACAGATCCTG ATACTGAAAC 002400
002401 CCATTAGATT CAAGATCACA GATCCATAAG TCCTCTAATA CCTATAGACT aaaatgtgat tggcagacca gtgccatcat 002480
002481 catgtcagca tcaccaggaa gcttgttgga aatgccaaac ctcagggccc accctaggcc aactgaatca gactgtgaat 002560
002561 tttaacaaga accctacatg agtcttacaa acactaaagt ttgagaagGA AGCTGTAATT AATCCACAGA GGAATGCGTG 002640
002641 AGAAAATATg aatttaagtt ctatgtgaat gggaattttg cctgttttat ttgtggctct gtgaatagca tctataatat 002720
002721 tgcctgacac atggtgagta cataataaat atttgttgaa AAAACAATCT ATCTTAATTC CACCTTTATT ATTTAAAAAA 002800
002801 TCAAATAAAA GTACCTTCAG AGTTGATAGT TTAGCTTTTG AATATGAAAG GCAGCCTTA
[back to top]

Predicted Small Protein

Name NONHSAT127323_smProtein_2048:2155
Length 36
Molecular weight 3963.4257
Aromaticity 0.114285714286
Instability index 42.6485714286
Isoelectric point 8.09906005859
Runs 5
Runs residual 0.0382566585956
Runs probability 0.0332980038863
Amino acid sequence MYNPLFWQLLATEYKIGSEKISQEKSGSSLGNSKQ
Secondary structure LLLHHHHHHHHHHHLLLLEEELLLLLLLLLLLLLL
PRMN -
PiMo -