NONHSAT127350
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127350 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5454 nt |
Genomic location |
chr8+:77914715..77920168 |
Exon number |
1 |
Exons |
77914715..77920168 |
Genome context |
|
Sequence |
000001 AATGTAAATA AGACATTGAT TTATGTCCCT AATATAGTTT TAAAATGCTG ACTTTAAGAA GTTAAATTTA TTCTAGAATA 000080
000081 TTATGTAGTT CCTAAATCAA TATATTTGAG TCTTTTAGGA AAAAGTTAAG TATGGATCTt atattagttt accattaata 000160 000161 ctatttctgt aacaaagtta gaagctcaaa ccaccaccaa tttattacct tacagttctg tagtcagaag tccaacatgg 000240 000241 ttctcaatgg cctaaaatca aggtgtccac aggattgtgt tcctttctag agaggtaagg gaagaatctg attttttttt 000320 000321 tttttttgct tattcaggtt gttggacaaa ttgagtccct tgctcttgta gctgttctcc ctgtttcttt gctggctgtc 000400 000401 agctaagagc tgttttcagc ttctagaggc cactcacatt tccttggtta tggccctctt cgtctccaaa gccagcaatg 000480 000481 gtggattgag accctttcat ccttgtaaat ctttctttct tcttcttcca ttgctgtatc tctccaatta cagcctttta 000560 000561 agaatccatt ggttagacag aatctccccc gctcaaggtt cataactttt atttacatct gcaaagttgc ttttgcggta 000640 000641 ataatgtaac atattcacag cttacaggga ttggggaatg gatatattta ggagccatta ttctacctat ctcaGATCTC 000720 000721 AATTGGGGCC ATGCAGTATA TCCAGTGTTT CATACCACTA TTCTCAATAC TTTATGTTAG AATAATAATA TTGataatag 000800 000801 gtaaattttg ttggttatat aatatgctca aggtactttt ctgagccctt ttactaaatt cactcattta atcctcagaa 000880 000881 ctaccctagg aggcaaacac tgttattgtt cccactcaca gatgaggaaa caggtactga aagctgaagt aacttgtcga 000960 000961 atttctcaca gccattaaat ggtgaaatgg agatctgaac ctaggtagtc tggttccaga gcctgtgcAT GCTCTGAAGC 001040 001041 TCAACATAAT AAAAATAATT TCTACATACC TGGATTTAAC TAAACATGTG TTGatgatac agtggctatg aattcaggtt 001120 001121 ctgacatcac cttgtggatt caaattctac ctacccatta ctgaatgacc ctgggcaagt tacttgacct ctctgagact 001200 001201 taacaataaa ctgaaccaat aataatagtt gagaattaaa caaatactat atgtaaggta cttagagcac tgcctctaca 001280 001281 tacagtcatt cataacaata gagatacgtt ttgagaagtg cgtcattagg ctattttgtt gtgtgaacat cgtagagtgt 001360 001361 acttacacaa acctagatga tgtagtctac tacataccta ggctacatgg gataaccttt tgctcctagg ctacaaaccc 001440 001441 gcacagcgtg ttactgtact gagtactata ggtagttgta acacagtggt aagtatttgt gcatctaacc atgtctaaac 001520 001521 atagaaaaat tgcagtaaaa atacagtatt ataatcttag ggaccactgt tgtgtatgtg ggccatcatt gactgaaaca 001600 001601 tcattatgca gtgcaAGCAA TTGCTAGCTG TAATTATTGA TGACAATTCA ACTTTTAAAA ACAGTATTTA TTATAAAAAG 001680 001681 AAATGTTTCC TTTAGAGATC AGTCTTTCCT TGTAAAATAA AAACTGAAAA TTAAAATTTT TACTTTAATA CACTACAGTG 001760 001761 CTATCTCCTT TCTCAGACTC TGATTTCTCC TCACTCTAGG CTAGCATCTA TCGTTCTAAC CATGGTACCT TCAGTGTTAT 001840 001841 CTGATCATGC ATTCTAAATA CTTTGTCCAG ATCCTAGTAT CTGCAGGCTA ATATTCAAAC TCTCTAGAAG GGCACCAGGA 001920 001921 CTTTTCACAC ATTCCAGAGA CTCTCTCTTG CCATTCCTCT GCTGGGTATT TACACAGCCA TCAATTCTAA CTTTTCACTG 002000 002001 CTCTCGTTTG CTATTATTAT TCTTTGAGGG AGACTTATGT GTGTGGAGGG GACTCTGGGG AGTATGGACA ATGTCATATC 002080 002081 CTGGGTCCCC TTCCATAATG CCTGCTAATA CCACTCCAAA TTCACTCTCT CTTTTAATAA TCTTTCCTGC ACTTGCCTTA 002160 002161 ATTCAAACCC TCATTATCCT TGCACTTTAA GCCATCTCTT AACAAATTGG TGGCCTCCAG CCTCACTGCC CTTCAGGCTT 002240 002241 ACTATCCTTG CTTGCTGGAA TGATCTCTAA ACTACAAAAC TCTATATGTT ACTCTCCTTC TTCAAACCAT TCAGTGTCCC 002320 002321 CTCTGCCAGG TCCTACAAAT ATTACTCTTT TTTCTGTGCC TCTTGGTACC AGTTACATGC TTCTACCGTA ACTTAAAAGG 002400 002401 TGTCACACAG TTGTTTATTT AAATACATAT CTTCCCTTCT AAATCAGGAG CTCATGGATA ATAGAGCCAT AAGAGATGGT 002480 002481 TTTGCTTTAA TGAATttata ttatttcatg ataacataaa ttattgtatt attgtatcat ctgtctcttg tcactaatct 002560 002561 gtgaactctt taaggggaga ctaattgttt tattcatttc tctttttcct ctatgcccgt ggcataggag gtacttagta 002640 002641 attggtcaat gaatgaTTTG GGAAAAATAA TCCAGAATAT ATACAATTTT TTAGTCTGCT TCAGTCTAAA TAAATATATG 002720 002721 AAACTATGTA TTTGGAATAT ATATGATTTC ATTATGATTA TTATATACAA TTCAATTATG ATTTTAGAAG AAGCATAATT 002800 002801 CCTGTACTCT GGAGCCAGAG TGcctgagtt tgaattctgg ctctgccact tacaagcttg gggaagtttt cttggGAAAG 002880 002881 CTAATCAAAA TTGTGTTTGt tgtttgtctg tagaagaaga atgataatag taactgtctt ttaagttaat agaactaaat 002960 002961 gaataatatt tataacgtat ctatgacttt agactctata atagtgtcta ccacctagta aatgttctac aagtgcttgt 003040 003041 taAATAAAAA CATAATAGTT TTTATTCTCA TTGCTTTTGA TGATAGGTAA TGGTCTTGAA ATACAATGAT TTAGAAAAAA 003120 003121 TCGTCCCGTA CTTTCTAGTG GTGTTTTGAA CTAGTTTTTT TACTCAATGA TTTTTAATAT TGTACATTCT AGAATGATCA 003200 003201 TATATATTCC TTCAACATTT AGAGAGTACC TGTGTGTGAT CTCTCTCAGG AAACACTTAC ATATTTTCTC TTtgtattat 003280 003281 ttttctgttg ccattataac aaattaccac aaacttagtt gcttaaaaca acgtaaattt attatattat tattctatag 003360 003361 atcagatgtc tgacaataat ctcaccaacc taagatcaag ttgacagcag ggtagcactc tttactggag actgcaggct 003440 003441 agaatctgtt ttcttgcctt ttcccatttt ggaggctgtc cacattcatt ggctcttggc ccccttcttc taccttcaaa 003520 003521 gcctgcaatg ttgcatctct ctaatcattc tggcataatc acaagtgttt ctctgaccac agccaggaat ggttctctgc 003600 003601 ttttaaagga ttcttgtgat aaaattggac ccacctggat aaaccatgtc agtcttccca tttcaagaac cttaacttga 003680 003681 ttacatgtgc aaaattcctt tccctatgta aagtaattta ttcataagtt ctatggattg gagtatggac ttctttggag 003760 003761 gactgttatt ctgcctacca caCTCTTGTA CTGTAAATGA GTCACTGTGG AAAGGTAATA GGTTGTAGCT TCTGAAAATA 003840 003841 AAGATAAATG TTAGCTAGAT TGTTAACAGT AGTGTCAGTA TCATTTATGA CTCTACTGGT TGTTGAGAGC GAAGTTGGCT 003920 003921 TAGTAGAATG CTTAGGTACT GCAGGGCTCA CTGATTATGT CTTTGTCTCC TAGGATTTTT ATTCTACTAG AGAGGGAAGA 004000 004001 ATACATTCAT atttgttgca tatctgccgt gtcctaggta ctctacaatg aactacagat acattaatcc catttaattt 004080 004081 ccacaataac tttatgaggt gtggtaggag gccttctaag atgacccaat gatctccatc acatagcact cacccccttg 004160 004161 tataatctcc ctcctttgaa tgtaagctta acccagtgac tctaccaatg aacagagtag gacaatagtg atagtatatc 004240 004241 atttctgaga ttggattcca gaaaactatg acttgtctct cacttacact gtctgtctct tgccctctta tttgcttgct 004320 004321 ttgatgaagc aagctgcagt gtggtaaact gcctttgaaa gagacccaca tgtcaagaaa ctgagcatca cctgtgacca 004400 004401 acagccagaa agtaactgaa gccccaagac gaacagcttg tgcaaaacta aattctgcct acaacaagag catgaattga 004480 004481 gacgcagatc cttccctagt tgatccttga aatgcttgca gctctatgga caccttgatt gcagccttgt gagaaattct 004560 004561 gaactagagg acctcgtatg ccttacccat aggtcttaca agataatacg tgtttttcaa aaaagtaagt ttggggataa 004640 004641 tttcttatgc agcaatagat aatgaataAT AAAGTAAATA CAGTTTTTTG CTGTTGACTT CAAAAATGTT TAAAGAtttt 004720 004721 actgttatat aattgtacat atttatgggg tacatgtgat attttgatac atgcatacaa tgtgtaatga tcaaactggg 004800 004801 gtaatttgaa tatccatcac ctcaaatgtt atttagtggt attgggaaca ttccaaatct tgtaggtatt ttgaaatata 004880 004881 caaaaagtta ATTTtatata taaatatatg tcatatatta ttaatatatt aataatatat gccatatata tatatgtatg 004960 004961 tataaatgcc atatatatTA ATTACatgta tggcatgttt tcttttatac atttatccac tgataaacac ttaggttcct 005040 005041 tccttacctt ggctattgtg aatagtgctg caataaacat gggagtgtag ataatctctt tgatgcacta gttttctttc 005120 005121 ttttggatgt atacctagca gtgagaatgc aggatcatat ggtagatata tttttagttt tttgaggaac tttcatactg 005200 005201 ttttttacag tggctgtgct tatttacatt cccaccaaca gtgtgtgagt gttcacatcc ttgccagtat ttattatttt 005280 005281 ttgtcctttg ataattttaa ctggagtgaa gtgatataat tgtggttttg atttgcattt ccctaatgat tagtgatgtt 005360 005361 gggtattttt tttaatacct gttggccatt tgtatgtatt cttttatgaa gcatctattt agatcatttg tccatttgta 005440 005441 aatcagatta tttg |
Predicted Small Protein
Name | NONHSAT127350_smProtein_4907:5089 |
Length | 61 |
Molecular weight | 6816.0948 |
Aromaticity | 0.166666666667 |
Instability index | 40.7183333333 |
Isoelectric point | 6.68292236328 |
Runs | 6 |
Runs residual | 0.0497340425532 |
Runs probability | 0.0215656833305 |
Amino acid sequence | MSYIINILIIYAIYIYVCINAIYINYMYGMFSFIHLSTDKHLGSFLTLAIVNSAAINMGV |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEELLLLLHHHHHHHHHHHHHHHHLLL |
PRMN | LHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | TTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |