NONHSAT127373
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127373 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1527 nt |
Genomic location |
chr8-:79635083..79636609 |
Exon number |
1 |
Exons |
79635083..79636609 |
Genome context |
|
Sequence |
000001 TTCATACATA TGTAGATATA CAGAAATGTA AATATATATT CACCCAAGCC CAACAATAGC ATGGCAACAT ACCTCTTAAA 000080
000081 TATTTAGATT AACTGTTTTT ATTCTATGCT CTATGGAGTA AACCTTTGCT TGTATTACCT GGACTCTTAA AATCATAGGT 000160 000161 GATAAAAAGA GAAAGAAAAA AGAACCTGTT TTAAAATGTC CTCTTGCTGG TTGGATTCTG AGCTCCTAGC TCTTCCCCAT 000240 000241 GGCTGACCTT GAGGAGTTGT GGGTTTCTTC ACCAGCTCCC AGAACTTCCC TTTTCTTCCT CATCTTCAAA CACCTTTTAG 000320 000321 CATCTTTCCC ACGCAACCAG TGAGTTTGGG CTGGCCAGTT CTGAGCAGGA ACAAGGGCCA AATGGTAGAC CTGCTGGAGA 000400 000401 AAGTGGAGAT GCAGATCAGA GATGCAGCAT TTTCATTAAC CAAATTTCTT GAGGTCACAT CTGCAGTACC AGCTCAAGTG 000480 000481 GAATAGCTTG TCTTCCAATG TACAGAAAAT GCATGTTTCC TTAAAACCTG GCAGGACCTC TTGAAACAAG GCTATGATTC 000560 000561 TTTGAAACCT GATGACTGAT TTGGCATGCT TAGTTATTAA TGATTGTGTA ATAACTCATA CTTCCTCATA TATGATATTT 000640 000641 GCATATGTAC TACATGTATA GAATGATCTC TTCCCAGCAG TTCTGTATAT ACTCAGAATG AAATTTTTCT TGGTTTTCTT 000720 000721 GGCCTTTGTG AAAGCAGAAG GCTGACGCTA TTTTTGTTGC TGACCAGTAC TTGTTTATCC ATTAATATTT TCTGCCCTCT 000800 000801 AAACTTTTGT ATAATCCTTT ATGAAAGTTA ATTTCATCAG TATATAGTTA ATATTAATAG TGCCAAAGTG CTACCAGTGG 000880 000881 CAAACTAGGT AGATCGTTAT TTATTTTCAA CAAGATGCCA AGCATGTCAG AGTTTGAAGT TGAGCTTCAG CTTAAGTACA 000960 000961 AACGGAGGTA ATTTTAAGGT TGCCAGTGAT AGATCCAGTt ccattaggtt tagttctcta gggctaatga ttgtttctga 001040 001041 tttatttcta tatccctagc acctaaaaca gtgtcacaca atagtcacta aatgtttatt gaataaaaga gtCGACAAAC 001120 001121 ATAATTAAAA GCTATTTTTC TTCCTATATA TAGCATGAAG ATTGTAATTG CTTCTCTAGA AAATGTATGA ATCCAAACTT 001200 001201 TACTAACTTG AGGAAAAACA TTCTCTTTAC AGAGATTTGA ACTTTGATGA TGGCTTCTAA atatatatat atatatatat 001280 001281 atTTGTACTT CTATATTTTT ATAGAAGGCT TTCCTTTGGA AAATGAAAGA CTATCTAGAA AGAATGCATG TATTCCCCCC 001360 001361 TATTTTTTAT GGTTATTATT TTTACAGTTT TTTTGTGGTT GACATTTTTA TATGTTTGAT TGCTATCTTT AAAGTGCCTT 001440 001441 ATCAAATTTA TGGCTCTGTG CTGTTACCTT TTGAGCTTTG CAAGTTGTTT ACATAATAAA GAAGTTACTT TGTTTCCAAT 001520 001521 GCATCAA |
Predicted Small Protein
Name | NONHSAT127373_smProtein_1322:1495 |
Length | 58 |
Molecular weight | 6950.2896 |
Aromaticity | 0.280701754386 |
Instability index | 41.0301754386 |
Isoelectric point | 6.50885009766 |
Runs | 13 |
Runs residual | 0.0741228070175 |
Runs probability | 0.0358933594228 |
Amino acid sequence | MKDYLERMHVFPPIFYGYYFYSFFVVDIFICLIAIFKVPYQIYGSVLLPFELCKLFT |
Secondary structure | LHHHHHHHLLLLLLEEEEEEEEEEEHHHHHHHHHHEELLLEEELLEELLHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooo |