NONHSAT127467
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127467 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2137 nt |
Genomic location |
chr8-:82608603..82610929 |
Exon number |
2 |
Exons |
82608603..82609131,82609324..82610929 |
Genome context |
|
Sequence |
000001 CTTTCGTAAG CAATGACGCC AGCCACTTAG TCCATTGCAA AATAACTGAT GGTCCTGGAT ATTTAATCAT GTTAATGCAG 000080
000081 TCTGTTTCTT AACTAAAGAA AAATGGGTGC CCTTTAAAGT TTTTTTTTTT TTTTTTAAAG ATTAGGAAAC AGGAAGTCAG 000160 000161 AAGAAGCAAA ATTAGACCTC CTAAGGTAGA TGCCTAATGA TTTACCATCA AAATTCAAAA TTTTCCTTGT TTTATGAGAG 000240 000241 GAATGAGCAG GAGCATTGTC TTAGTGGAGA AGCAATCTCT GGTGAAGCTT ACCTGGGCAT TTTTCTGCTA AGACTTTGGC 000320 000321 TGTCTCTAAA CATTCTCATA TTTTTTTTTC TTTTTGTAGA GATAGGTCTT GCTATGTTGC CCAGACTGGT CTTGAACTCC 000400 000401 TGGCCTCAAT GGATCCTCCT GCCTTGGCCA CCAAAAGTGC TGAGACTGCA GGCATGAGCC ACTGTACCCA GCCTCATAAC 000480 000481 ACCTTTATAA TAAGCAGACG TTATTGTTCT TTGGCTCTCC AGAAAGTCAA CAAGAAAAAT GCTTTGAGCA TCCCAAAAAA 000560 000561 TAGTTGCCAT GACCTTGCTT TTGACTAGTC CACTTTTATT TTGACTGGAC CACTTCCACC TCTTGGTAGC TATTGCTCTG 000640 000641 TTTGTGCTTT GTTTTCGGGA TTATTCTGGT AAAGCCATGT TTCATCTCCT GTTACAATTC TTGGAAGAAA TCCTTCAGGA 000720 000721 TCTTGATCCC ACTTGTTTAA AATTTTTATT GAAAGACAAC TGAAATTTTA AGTAGAAAAC CCACCAGGAG AACAAAAGTA 000800 000801 CTCTTGTCTG TAGCTGATCT GGGTGCAATA GTTTCGGTAC CCATCAAGTG GAAAGTTTGC TCAAGTTTAA TTTTTCTGTC 000880 000881 AGCATTGTGT AAGCTGAACC AACTGAGACA TCTATGATGT TGGATATTGT ATTAGTCCAT TCTCACACTG CTATAAAGAA 000960 000961 CTACATGAGG TCGGGCGTGG TGGCTCACGC CTGTAGTCCC AGCACTTTGG GAGGCCGGGA CAGGTGGATC ACCTGAGATC 001040 001041 GGGAGTTCGA GACAAACCTG GCCAACATGG TGAAACCCCA TATCTACTAA AAATACAAAA ATTTGCTGGG CATGATGGCA 001120 001121 AACACCTGTA ATCCCTGCTG CTCACAAGGC TGAGGCAGGA GAATCGCTTG AACCTGGGAG GCGGAGCTTG CAGTGAACCG 001200 001201 AGAGAGCACC ACTGCATTCC AGTCTGGGTG ACAAGAGTGA AACTCTGTCC TCCCAAAAAA AGAATTACCT GAGAGTGCGT 001280 001281 ACTGTATAAA GAAAAGAAGC TTGACTCAGT TCCACAGGCT CTACAGGAAG CATGGCTGGG AGGCTCAGGA AACTTAAAAT 001360 001361 CATGGGAGAA GGGGAAGAAA GCACATCTTC ACATGGCCAG CAGGAGACAG CAAGTGAAGA GGGAGGTGCT ACACACTTTC 001440 001441 AAACGACCAG ATCTTGTGAG AACTCTATCA TGGGACAGCA CTAGGGCGAT GGTGCTAAAC CATCAGAAGC CATGCACATG 001520 001521 ATCCAATCAT CTCCCTCCAT GTCCCTCCTC CAACACTTCC TGTCATTACA CTTCTGCATG AGATTTGGGT GGGGACACAC 001600 001601 AGCCAAACCT CACCATAAAT TTGATGTGTG TTCTTCCTTC AATTTTAGCA GAATTTATGT TTCTCTGATA AAAGAGCTCT 001680 001681 TTTCTAAATG TCTTATCATA GTTAGTGTCC CTCACTAGAT CCTGTTCAGA CATGTTACAA AAAGTTTATT CTGGTGCAAA 001760 001761 AAAAAAATTG AAATTCATAC ACACTTTTTT ATAATACATA TTTTCCATGA AAATTTAGAA GAACACTTAT ATAGATGAAT 001840 001841 GATAGATTAT CAAAGTTTTC CTAGATTTGT CAGGCTTTGT TCTTCACGGT TTTCAAATGA AAGGGCCTGG AGAAACCGAA 001920 001921 GAACTAAAAG GGTTGCAGAA AGAGTCCTAA GGGGAAAGAA AAACTGATAT ACTCACATCT TCGACCTAGG CAACAAAAGT 002000 002001 TATGAGTCAA GATATTTGGT CACATAACTA AAGATAACTT AGGTTTTATG ACATTTTTGT TTTTTGTTTT GTTTTTGTCA 002080 002081 GTTAAAATAG GGAAATTTTA ACTGAAATAT CAATGAACAG TCCCATTCCC TATCCTC |
Predicted Small Protein
Name | NONHSAT127467_smProtein_1511:1717 |
Length | 69 |
Molecular weight | 7921.3213 |
Aromaticity | 0.132352941176 |
Instability index | 58.7470588235 |
Isoelectric point | 9.35455322266 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0231809349457 |
Amino acid sequence | MHMIQSSPSMSLLQHFLSLHFCMRFGWGHTAKPHHKFDVCSSFNFSRIYVSLIKELFSKC LIIVSVPH |
Secondary structure | LEEEELLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLEELLLLHHHHHHHHHHHHHHLL EEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTT Tooooooo |