NONHSAT127496
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127496 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1543 nt |
Genomic location |
chr8+:84315993..84321135 |
Exon number |
2 |
Exons |
84315993..84316304,84319927..84321135 |
Genome context |
|
Sequence |
000001 CTTCCACATC GTGGAAGCTT TGTTCTTTCG CTCTTTGCAA TAAATCTTGC TACTGCTCAC TCTTTGGGTC CACGCTGCTT 000080
000081 TTATGAGCTG TAACACTCAC CGCGAAGATC TGCAGCTTCA CTCCCGAGCC AGCGAGACCA CGAACCCACC AGAAGGAAGA 000160 000161 AACTCCGAAC ACATCTGAAC ATCAGAAGGG CAGACTCCAG ACACGCCACC TTAAGAGCTG TAACACTCAC CGCGAGGGTC 000240 000241 CACGGCTTCA TTCTTGAAGT CAGTGAGACC AAGAACCCAC CAATTCCGGA CACAATTTCT TGGCTCTCAG TGGCTTCCAT 000320 000321 GGAAGTTCTG CAATCAACCA GCAGGAGAAC CGCTTAAACC CAGGAGGCGG AGGTTGCAGT GAGCCAAGAA TGCATCACTG 000400 000401 CACTCCAGCC TGGAAGACAG AGTGAGACCC TGTCTCAACA AAATAAATTA AAATAAAAAA TAATATATTT TTCTAACTAT 000480 000481 CATCCCTTTT CCAAATCAGG AATTCCCCTT AAGTTTTCCT CAATTTCCAT GGCAATATCT TTGCATAGAT TCATTAAGAA 000560 000561 TTTGTCCTTT TTAAATAAAA AATATAAAGG GAACTATTCA TTAGGCAACA AATGCCTTGT CTGAAATATC ACATTTGAGA 000640 000641 ATGCTGCTCA TTTAATCAGA AAGGTACACT ACTTTAAAGA ACTGAGGTCC ACTTTCTGGA GCCAAAAACT CATAAATCCC 000720 000721 TCTCAGAAAA ACCTGATTTG CTTTGTAGGG TCTCAGGTTT AGAGATGCTG AAAAAGATAT TTTCGTTGCA GACAAAGGAC 000800 000801 CTCAGAGTAT TTGGAGAACT TTGAGAAGAG AGGAATTCTC CCAAATGTAT AGGTGTCACA GGTAAAATAC AGTCGAGAGA 000880 000881 TTTTCTTGGA CTTTAATTCC TTAAATCAGG ATAGCAAATA ATAGGGGCTT TTACAAATTC AATCTGTTTC CTTACAAAAA 000960 000961 TTTTCAGCAA AGTAATTTCA GCAAATTAAT TTTCAGCAAA GTAAATGTAA GAAGACTTAT GTGAAAAATT AACATTCTCC 001040 001041 ATGTATCTAT GAAGCCAAAC CTAATAAAAC CAGCTTTAAT TTGTGCTCAA GAATATTATT TCACTGAGTT TTCTTAAATC 001120 001121 ACAAAGGGGA GACTGTTATG AAAACTGATA TAAAATAAAA AAAACAAGGA AGAAAAGTCT ACTAGATGTC TCTAATGGAA 001200 001201 GACTGCATTT TTAGAACATA TCCTTATAGG CGATTCTAGC CTTTCTCTGC TATTTGGCTC TCACACTCTT TACCGTGCAG 001280 001281 ATAATTCACA GCAATGCAAA AGAATCCTCA TCTATAGCCA TGAAAATAAG TTATTTGTTA TTTCTGGTAA AGGTTCAATT 001360 001361 GACCTCCCCT TCCAGGATGA AGAAAGTTTC ATGTCTTTCT GCATCATTTC AACTATTCCT TACTACATAT AAATCTGCAC 001440 001441 TTGTTAACTT CTATTTTGAA TTGATTGTGG CATCTGCCTG CTTCCCCATT AAAACTGAAT AAAATCTTTA ACACATAAAA 001520 001521 AAAAAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT127496_smProtein_1319:1501 |
Length | 61 |
Molecular weight | 6846.1862 |
Aromaticity | 0.15 |
Instability index | 41.3368333333 |
Isoelectric point | 9.56695556641 |
Runs | 8 |
Runs residual | 0.0164007092199 |
Runs probability | 0.0503223812047 |
Amino acid sequence | MKISYLLFLVKVQLTSPSRMKKVSCLSASFQLFLTTYKSALVNFYFELIVASACFPIKTE |
Secondary structure | LLEEELLEEEEEEELLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooo |