NONHSAT127657
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127657 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3487 nt |
Genomic location |
chr8+:91658669..91663985 |
Exon number |
2 |
Exons |
91658669..91658861,91660706..91663985 |
Genome context |
|
Sequence |
000001 AGTCCGTGAG CGGCTTGGAT CCTCGCCCGT TCCCTCCTGG TCGTTTCCGC AGTAACCTCT TATCAGAGCG GGCAGCTGTG 000080
000081 AGTGGCGCTC ACATCCGCCG CTGCCCTGTC GAATGGGGGA AAGAGTTCTT GTGTTCTGAG GAGGGTTTGG CTATGGTCCT 000160 000161 TGACCCTATT CTTGTCTCAG ACTTGCCTCC CAGGAATATA GGAGGATTGT ATGCCCTGGC CTCCCTGTGA TGGGGTTGAA 000240 000241 CTACATGACA TGTTCTCCGA ATTAAGTGTG AGCATAGCAT TTAATTGTTG ATGCAAGACC TTCCAGGACT CTTTTTCTCT 000320 000321 TTGCCATGGC AATCATCAGT GTTCCAGAGA GCATATGCAC GATCAGCCTT GGTATTGGAG GGAAGATGAT GCGGAACAGA 000400 000401 GTCCCAGTCA CATCATGAAG GACATGTAAA GTGAGAAGTA AACCTTGGTT GTTTTAAGCC ATTGAGATTT GAGTTTTGTT 000480 000481 ACCAGAGCAG ATCTTTGTCA TCCTGGATAA TGTGCCTGAG AAGAAGAGGT TTAAGGAAGA AAACTTGTGA ACACCAATGT 000560 000561 GCTTGTTAGA CTCCTTTGCT TGTAAGAAAG AGAAACTCAA GAGACTAATG AAAAGAAGGA ACAAGTGTTT ATATGGGTAT 000640 000641 ATGAGTAGCT ATTAGGAGCC CAGGCATAAG CTACTCTCTT ATTTCTTTCT CATTGTGTCT CTGCTCTTCT CTACCTCTTT 000720 000721 AATCTATTCT CACACTACCA ACTGGCTAAT TAATCCACTT CTTATCCTTT AGTCTGCATT TCAGAAGAAT ATAAGCCAGT 000800 000801 TCCAGAGCTC GTAGCTCTAA GTAGCTTCAT GGGCTGCCAG CCAACCTGGA AATGAGCTAC TCTTGGGTCA GGTGCCCATC 000880 000881 CTGCTCTAAA CAGTGTCACT CCTACCTGAA ACATCATTTA GCTTTCCTGG GCATGGGACC TCTGGTACAG CAATGCAAGC 000960 000961 AGTAGTGGGA TATTTCTATT CTCGTCCCAC TACAATTTAT TTTTCACAGA ATTGTGAAAA TTATGTTTTA CAATTGGACA 001040 001041 TCAGATGTGT CTTAATCCAT ATCTACCAGC CCACTACAAC CAGCCTAAAA CTCTTATATT GCGTTAGGGA AAGACCCAAC 001120 001121 TCTCTGCCTG GCCTACAAAG CCCTTTATGA TCTAGCCTCT GCCTGACATT CCTACCTCAC CTCCTGCCAC CCTCCCTCTC 001200 001201 ACACGTTCCA GCCACCCAGG CCTCCTGTGT CTCCCTTGGA TGAGTCAAGC TGGTTTCCTC CTCAGGACAT TTGCATTCTG 001280 001281 CCCTTGCCAA TCTTTCTTGT TTGAACACTC TGCCCTTGGC TCTGAGAAAG CCTGGTTTCT TCATTCTTAT TCGTTTTAAG 001360 001361 CTCTCCTGTC ATCTCCTCAG AGATGACTTC CCTGATTACC CTCATCTAAA GGACTGCCCT CTCTACATCG GGTTACTGGT 001440 001441 ACCCCTTATT TTCTTCATAG CACTTATCAT CACCTGAAAT TGCCTTGTTT ATTCCTTTAC TTTCTGTCTT CCATAAGCAG 001520 001521 AATGAAATAC CATGAGAGTG AGTATCTTTC CTGTCTTGTG AACCCCTGTA CTCTGATTCC CTAGAATAGT CCCTGTCACA 001600 001601 CTAAATATTT TTTAAGTGAA GGAAAGGGAT GGTGGGCAGT GTGCTCATGT GCTGGTTGTT CTCTGGTGTC GTCTATCCAG 001680 001681 GTTCAGTGTC TACCCTTCGC TGGCTTGCTG TGTGTCTCAG GAGGTTGACC TCTAGAGACG GTGTCACTCA GCCTCCACTG 001760 001761 GGCTCTGGAT TTCCAGTTAG GCTTGACCAG TGAGAGGCAC CAGCAGAATA TTGGAGGGTA GTACAGGTGA GAAGTGGTCA 001840 001841 GGGTATTTAT CTCTTCCCGG TTGAGTTTCA CTATGGTTTT GGCAGTGGTT GAATTTTGTG AACAAAGTTC TTATTTACCA 001920 001921 AGTTTCCAAC TCTTTCCCAG CTCTAGTAAT GATTTTCTGA TGCTTTGTCA TCCTTTTTAA TACTTCCTTG ATTAGACGCT 002000 002001 ATTTACAGTT GCTTTTGTTG CCTGCAGGAA CTCTCACTGA CACAGCAGGG GCAGGTCAGA GGCTGACAAG CTCAGTACAG 002080 002081 CTAACACTTG AGTTCATATA ACTCACCCAT AGCCACACAG AGAAAGTGGT GGAAGCAGAT TTCAAATTTA AACTCAGGGA 002160 002161 GTGTGAGGAG ATCTGCAGAA ACTGTTATAT TAGAAGTCCA AGGAAGAGAG AATGTTAAGA TGTTAAGATG GAAAGATGGA 002240 002241 ATGTTAAGGT GGTTTGTCAA GTGCAGTTGG AGTCCCTTTT TCTTCTGGGT TTGGTGGCCT GCTGCACCTT TGCCTTTCTC 002320 002321 TGACTCTCAT TAAAATTGTT AATTAAGGGA GATTTTAGAG TCCTAGGCTC AAAATTAAAA TTTGGTTTAT TTTGTAATAC 002400 002401 GGCTCCAGAA GCCTTTAATT CTCTATTTAA TTTTATTTCT AAAAGAAAAA GATTGGGCAC TACTGACCTA GATAAAGACC 002480 002481 CAAGATGAGA GAAGGACCAA TGAGTGTCCC TTAGATATTT CTTTTAAAGG TAGCCACTAG GGCCTTAGGG AAAGTACTTT 002560 002561 CAGGAACAGA CAAATTGCAC CAGTTTGAGA GTGAATGAAA GGTAACTATG AAAGAGTGAG TTTAGATAGC ACTTTTAATA 002640 002641 ATTTTGGATG GAAAGGAAGA AAAAGGTGAT AGCTAGAAGG TAATACAGGG TGAGGAAGAT GGGGACATTC TAACTGAAGG 002720 002721 ATTCCAGTGT GTTTATAGAT TGAGGTAAAG AAGGCTGGAG AGAAGAGGGC ATTAAGGCAC AGAAGAGAGG AAATATAATG 002800 002801 AAGCCAGGTT GTAAAGGAGA TGAAAGAGAA TGTGGTTAAG ATATTAGGGG AAGGATTAGA TGCAGGGGAG ACAGTGCTTC 002880 002881 CTTTGAGATT CAAAGGAAAG ATGTAGAGAT GAATGCAAAT TTGCCACTGC CTATTTCTAA TCGTAATAGA TTCTGTCATT 002960 002961 TCAGGATTTA TTTTAATGTA GTTGGGGACT GGCAGGTAGT TTTTCTCTCC CCTTTGATAG CCTGGGGCTT CATTTCTGAC 003040 003041 TTTTCCTGAT CAAAAATAAG AACTGATCTA TCTTCTCAGC TCTTCAGGTG TCAATTATAC AATAAGCAAA TTTTTCCAGG 003120 003121 CTCCCTGTTA TACACTTGCC ACTACACTTC TGACTTAGAT GTGGTACTTT GTTAGTATCT GTGAGGACTG AAAATGAGAT 003200 003201 CGAAGAGAAA AATCCAATCA AGCATTAAGT AATCATATTT AAATGGAAAA TGGGAAGATA CTATTAACGA ATTCAATGGT 003280 003281 ACATCACTCT CTAAACTCTA AATTTGCTAT TTTATAATTA TGAATTTCTG TGTACTGTAC AATATTAGCT TCAGTTAATT 003360 003361 TTAAGTGCAC CCATAACATT AAATGTGTTT TGATATGTGG TTGTTGAAGC TACCTGTTAA AATTAGTTTG CTGTGATTTA 003440 003441 TTGTTATTCA TACAAATGGT TTATCAAATG CAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT127657_smProtein_1628:1792 |
Length | 55 |
Molecular weight | 5909.9262 |
Aromaticity | 0.0925925925926 |
Instability index | 64.8666666667 |
Isoelectric point | 9.68023681641 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.013915876661 |
Amino acid sequence | MVGSVLMCWLFSGVVYPGSVSTLRWLAVCLRRLTSRDGVTQPPLGSGFPVRLDQ |
Secondary structure | LLLEEEEEEEELLEEELLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |