NONHSAT127669
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127669 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1509 nt |
Genomic location |
chr8+:92075740..92082050 |
Exon number |
3 |
Exons |
92075740..92075974,92080139..92081168,92081807..92082050 |
Genome context |
|
Sequence |
000001 TTAAAAATAA TTCAAAACAG GTTTTTAATT TTCCCATTTC TCTCGGTTTA TAATAGGTAA TTGACATAAA GGGGCAAATA 000080
000081 CAGTGACTTC CACAAAACAT GTTGACCTCA AGAACACATT ACGGTAGCTT CGATCAGAGA CCAGGTAGAT ACGTATGAGG 000160 000161 TTGATGGCAC TGGAAACTAG AATGCTGCTT CAGTGCTACC CACGTTCTCC ATAAGTGTCC TAATCAGTAG TGGCCTTTTT 000240 000241 TTGCTATATT CTCTTTAATA ATACATACAG AAGGATTACT CAATAAATTT TAAATACATA AAATGCAACA ATTTAAATGT 000320 000321 ACATGTTTTT AAATAGATGT ATATCGATGT ACATAAGTAA AACTATCACC CACATCAAGA TCTGGAACAT ATATTTTATA 000400 000401 TATTAATGTC ATATTATTTA CCATATAGTT TGTTAAATGT TACATCCTAT ATTGTATGTT TTACATAAAA TGTCTTATGT 000480 000481 TTAGATTTTA AGAAAAATGT TGCCATTTCT ATGATTTATA GTTTCCATTA TCTTTAAACT CTTTGATCAT TTGTTTTATA 000560 000561 CAAATGTATC TCAGGTTAGA GATTGATTTT TGACCCAATT TCAATTGTAA TAGGGCTATT TAACCAGTTT ATAGGTCATC 000640 000641 TGTACTGTCA ATCTACTTTT TGCTAATTTT AGTGTCTTTT TGCTATTTTT CTTTTTACCA CTTCTTTTCC AAACATTGGA 000720 000721 ATGTATATAT TCTATTTTTG TAGTTAACAC TTATTTCCAT GTCAAATTTA CTTGGAACTA TATGATTTAC TTGGAACTAT 000800 000801 ATGATGCAGT AACTACTGTT TTTCCCCATG CATCATGTAC AGAAAATGAG GATGTATCCA CCCCCTCCCA AACCAGTGAT 000880 000881 TTGGAAGTTT CTTTACAGTA TCAGTAGTAA CATGGACAAA CTTGTTATTT TTTTCCTGCT ATACTTAAAA ATAAGGGAAA 000960 000961 TAAAACTGTA CTGTTTTCCA ATTGTCAGAT TTGACATTTA GAATGTTATT TGTCAAATCT ACAGTGACAA AGCCCTTTTA 001040 001041 CTTAGGTTTA GCTTAAGAAC ATGCGTATTT GTATCTACAA TACTACATGC TAAAAATAAA ACAGTATTTG TCCAATATAT 001120 001121 TGAACATGTG GTATGCCCTT CCAGTTTAAA CGTAAACTGA AATTTTACAC CCAGCTTATG TTTCTATTTT TGTATTTAGT 001200 001201 TTTAATGCCC TATACATAAC AATTTAAACT TAATGCTCCT TAACTAGTTT TAATGCATAC CATCATTCAG TAATTCGATT 001280 001281 TTGTGGCCAA TCCAGCGTGC GCCCTTCTGT TAACTCTCTC AACTTCCTGG TATTTTCCAA GCGCTCTAAT AGTACCCTCT 001360 001361 TTATCATCGC GCATAGGTGT TTAAGCTCCT GTATTATATG ATTCTCAATC CTTCTTATAT CTTGTTTCCA TCTCTATATC 001440 001441 CGTTTCAAGA GGAGGCATTT TCTCGATTAT TTAGCGCTGC TCCTTTTTTC TCAGGGGCGG TATTACGAC |
Predicted Small Protein
Name | NONHSAT127669_smProtein_827:1000 |
Length | 58 |
Molecular weight | 7045.5999 |
Aromaticity | 0.175438596491 |
Instability index | 44.6578947368 |
Isoelectric point | 9.84307861328 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0355944179473 |
Amino acid sequence | MHHVQKMRMYPPPPKPVIWKFLYSISSNMDKLVIFFLLYLKIREIKLYCFPIVRFDI |
Secondary structure | LLLLLLLLEELLLLLLLLHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHLLLEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooooooo |