NONHSAT127721

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT127721

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1753 nt

Genomic location

chr8-:93897579..93978357

Exon number

4

Exons

93897579..93898963,93904217..93904302,93966634..93966792,93978235..93978357

Genome context

Sequence
000001 CCCTTTGGGA GTAGGGGTGT GCGGCTGGCT TGTCCCGCCC CTGCCCCTGA GTGACAGAAC CGTGGACAGC AACATTTCCC 000080
000081 ACAGGACACG AAGTTTGTCG GCCCTTGCCT TGGCAGAGCT GAGTAAGAAA AATCACCAAG AATATTATTT TTGGTATTTG 000160
000161 GAATTGAATT TGCCAGGAAT GCAAGCACTG CTACCTAACT AAAGACCTTG GCTTTGGAAA CATCTTACCC CTTGGCAGCT 000240
000241 CTCCAGAGTT TAGACTTGGC AGCATCAAAG ACACAACGCA AGGTAAACAG GATTATAAAA AAACTAAACC TATTTTACGA 000320
000321 GCAACCAAAT TAAAAGCAGA AGCAAAGAAA ACAGCAATAG GCATAAAGGA AGTTGGCCTT GTACTTGCAG CTATATTGGC 000400
000401 ACTACTACTG GCTTTCTATG CTTTCTTTTA TCTCAGACTC ACCACGGATG TTGACCCTGA TCTGGACCAA GATGAAGATT 000480
000481 AGCTAAGCAA CAATCAATGC ATGAAAGAGA AATAACTTTA CGAAAGCACC TTTTGGGACC AAAACTTTCA ATACTGAAAC 000560
000561 TGTAACATCT TTAATTCTTT CTGCTAATAT TTTCAGTTTG CAGACATATG ATTTTTGATA GTTGCATAGG ATGTCAGGAA 000640
000641 AAGAACCTTA CCTAGCAATG CAGTATAGTA TGTGCTACTG GATACTTTTA TATATCTTTC TGCTTTGACA GCCACCCTAT 000720
000721 ACATGGTACA TTTAGATGAA ATGGGAACCA GATCCTAAAT TTTTCAAATG TCATTGCCAA TTTATGTGTA TAATTCCATC 000800
000801 ACTTCCTGAT GAGTAAGTCT ATTTTTGTTC TATATACATC ATAAGTTAGT ATATATTCTT ATTTACAGAA ACATGCTCAA 000880
000881 ATCACATTCA GAAAGAACAA AAAGTCATGG GAAATTTTTT ATTTTACAAC AAAGCCCTGC TTTCTTTCTG GACGTATTTT 000960
000961 ACATCATTAG AGAGACTATC TGCACATACA TCTACCATAA TCTTTTTCCT TCTTTGCCAA CTGTTCAGTG CACATGTGCT 001040
001041 GCATCAGAAA TGGCACCTGG ATGACAGAAG CTCAAAGAGT CACATATGTC TCTAAAATAG AGTTCTTTTC CTCTTGGGCT 001120
001121 GTCTGAACTG GTGTAAATAG AAGCTCAGTT GATCTTGGTT TTAATTAACT TATTACTCTA TTAATATAAC CTTGGAATTC 001200
001201 TATTCTAATT ATGTTGTTCT GGCTGCTTGT AGTATCAGTT CGCCCCTCTT GTTAGGGAGA TATGTAACAA TCTGTCATTT 001280
001281 AATTGAGCAG TCTTTTTCAC ATAACAGTAA TAGCAAAAAT CCTACCTACT CAGAATCATC TTCTTAGGTT GTCTCCTAAA 001360
001361 TCTGAACAAT ACAGTTGTTT TATAAAATTA CATTTTGTCT CTTGAGATTT AATCAATTAG AACTCTTTAG GGAGAAAATA 001440
001441 AATAATAGAA GAAAATATAT GCCTCATATT TCATATGTAA TTATCTGTTG ATATAATTTT TCAATGTATT TTGTATTTGT 001520
001521 GGGAGCATAA TGACCTGTAC ATTCAATATT TTTACTGGTA ATTCAATTTT TAAATATGTT TTTACAATGC TTGAACACAT 001600
001601 AAACCTTAGA AAACTGGAAA ATACGTGTCC ACAGAAAGAG TTATTAGCTA CTACCTTATG TAAAGATGCA TAGAAAATGA 001680
001681 AATTGTTGGA AACATGTGCA CAAAGTGTTT TATATTATAT ACATTGTATT TATGAAGAAT AAATAAAATA TTA
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Predicted Small Protein

Name NONHSAT127721_smProtein_872:1063
Length 64
Molecular weight 7216.3205
Aromaticity 0.142857142857
Instability index 74.1414285714
Isoelectric point 7.76129150391
Runs 7
Runs residual 0.0338516358925
Runs probability 0.0414111590583
Amino acid sequence MLKSHSERTKSHGKFFILQQSPAFFLDVFYIIRETICTYIYHNLFPSLPTVQCTCAASEM
APG
Secondary structure LLLLLLLLLLLLLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLL
LLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
LLL
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