NONHSAT127942

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT127942

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7038 nt

Genomic location

chr8+:100008217..100015451

Exon number

2

Exons

100008217..100013862,100014060..100015451

Genome context

Sequence
000001 GAAAAGTCAA GATTTTTTTT TTTTTCCTTT AGGCTGGGAA GACTAATCAG AGAGACTGCG AAGTAAAAGG GTTGTTTATG 000080
000081 ATTCACCATC AAACACATGT CTTTAATTAT CACTCTGAAT CCACATAACA ATATTCCTTT TTGGCACAAG GTCTGTACTA 000160
000161 GATGAATGAT AAAAAAGAGC CATAAGTGTG TAAGTGCCAT AAGTGTGTAG TATTCAGAGA CAGACAAGAT CCTCTCTAGT 000240
000241 TGCAGTGGTC AAAAAGTCTT ATCGAGTAGG AAGGCTTTGA CATGAACCTT TTTTTTCTAA GTTTAAAACT Attttattta 000320
000321 ttttttcaga gacagggtct tgctttgtca cccaggctgg agtgcagtgg cgggatcata gcagcctcaa gctcctaggc 000400
000401 tcaagtgatc ttcctgcctc agcctcccaa gtagttagga ctacagacat gtgccaccat gaccaactac gttttaaatt 000480
000481 tatttttgta gcaacagggt ctccgtatgt tgccctgtct ggtctcaaac tcctggcctc aagtaatcct cctatgtcgg 000560
000561 cctcccaaag cactggggtt acaggcatta gctactgttc ccagcTTTCA TTTGGACTTT AATGGATAAG GAAGACTTAG 000640
000641 AGcagcatta tcaaattctt tggccttagg acccctgtat aacactcttc aatattattg aggaccccaa acaggttttg 000720
000721 tttatatggg ttatatctat ctgtatttac catattagaa attaaaacag acaatttaca aatatttatt aatttatttt 000800
000801 aacctaaatt acatgttaac ataaatattt ttatgaacta tatttcccca aacaaaaaca gttagcaaag tggtattgtt 000880
000881 ttacattttg cattttaaca ggagacaggt gggttcttat atttgcttcc gttgtgatac tgcatgtcat gtagcctctg 000960
000961 gaaaactcta ctgtacacct gtaacagaat gagagtaaaa aggcaaatag catcttagta ttattatgag cgtaccattg 001040
001041 acattgtggg cccccgagaa gcactctgag aaccACTGAT TAAAAAAGAC TAAGGGCAAA ATAGAGGGAT GGCATAATTT 001120
001121 TAAaggtagg agggtataag gcatgttaca gagagagcaa acagaccaat ctggtagttg tgaaagattc acatggggga 001200
001201 ggtggaggag atatggctag aaatgtatac tgggggatcg tgttatatCA ATTAAAAAAT ACTAGCTTCC TTAATTATGA 001280
001281 CCATCTTCAC TGACCTCTAA TTTTGGCATC AGTAAGCTTC AGGGTAGGAA TGATAGAAGA GAAATTCATA TTGGTTTCAG 001360
001361 GCAACTCTAA AGTTATGTGG CTGACAGTAT TCTAATTGAT TTGTTGATTG CTTTATCTAT TTAatgtatt tagtgtttac 001440
001441 tacattcaaa gaagcaacat aagaactagt gatacaacga tgataaagac acagtctcta ctttatagga gctcccaatt 001520
001521 gagtggaaga ttcagatatt aaaataagca atacactcat taatctggag gaagacagag gagagggctg ctaactgtgc 001600
001601 ctgggtggtg tcatagacag cattgtacag gaaaccttta agTCCCAAAT ACTAATAACC ACTGATACAT GACCATGGTG 001680
001681 AGAAATACTT GATGTATAAG GATGACAGAT TCAGTACTAG AGTTAATACA GTAGTTCTGG TGAGATAGTC AGATAGTCTA 001760
001761 TAGAAAAATT TCCTGAATAT ATGTTCTCTT TTGAAAGTAA GAGTGTACAA ATTTTCTTTC TCCTAAAGCC CTGCAGCATC 001840
001841 TTTCTACTGC TAGGCCTGGG AGACACCATC AGTTATCTTA ATGTCTCTAT TTTCTTCAGT TTGATCACCT TTTTAAATCT 001920
001921 TTTTGTTCTC TGTGACTCAG TAACAAGAGT GAAGGGGAGG AAGAAATTTA GGTAATTACA ACAGCTTTAA ACTAAGAACT 002000
002001 GAGAACACCT TTACTAACCC AACTAATTAT GATTAAATAC GTAAATAGAG AACCTATCTC CCAGCACCAC CTGCAGGGGA 002080
002081 TGAGGAAGTC TGCAACAGGA TTCAACACTT CCTTTTCTGC CAACATATCT TTAGCCCAAC ATTCCATTAT TGAGAATCTA 002160
002161 CCAAGTTAAG AGCCTGCTTT TAGTGGCTGA GGAGAATACA AAGACCAATA AGGATAATCT ACCCATACTC TGAGGAACAT 002240
002241 TATTAAAACT TGGGGATGTT TGTGATAATT AAAATAGCTT GGAAAGAACT GATTAAATCG AAGAGAATCA GACTTCTTTT 002320
002321 GTGAAGATTG AATAGTAAAG CAACTACTGC ATTGCCATTT TACATCCCCC ACTGATAGAA ACTAATAACA AAGGTGATTC 002400
002401 CACAGTTTTA AAAGTAAAAT AATAATGATT AGTTTTGGAT CTTCAAGTCT GTTAAGTTTG CAATATGATG GGAAAAGCCT 002480
002481 GTGTTGCACA CCATCTTATA TGGACCTGTT AAGCATGCTC TTTTCCTAAT TTAAGGCTGG CCCCAGACAG CTACCTTAGG 002560
002561 GCTCTCTGCT AGTCATTAGA GGAATCAGAT GGAAAAAGAT ACATGGATTA GTATAAATCC ATATGCACCT ATTCAGTAAG 002640
002641 TAATAAGAAC TTTTTCCAGT AAGAGCTTTT TCTTTACTTA TCAAATCATG TCCTAGAATT TAAAGAGAAT GAGGTTTTCA 002720
002721 AAAGTTCCTA GTCTTTTGAA ATCTCACAAA CAAGGATAAA ATATTTGTTT TTTGATTTCA GAATTTAACA AAGAAGCAGA 002800
002801 ATATACCAGA CACACAAGAA GCAAAAGAAA TGAAATGAGC ATTCATAACA ACACGCTTAG AGCACAGAAA GCCTTATCCT 002880
002881 GGGTGAGTGA TCAGGAATAT GAATAAAGCT GATCTGTAGG ATGGCTTTCA ATGTTTTTGT TTAGATGTGC AGTCTTACTA 002960
002961 TATGTACAGG CAAGATTACT AGAGGGAACA GTCAGTCAGC TATCACCCAT CCTACAACCC AAGAAAATGC TCACAGGCAC 003040
003041 CTGGGTAGTC ATATTCAGGT GTTCTCAGTC TTTTTTCACT AGAGTTTTGA ACTGCCTATT GTATATTAAG GCTTGAGTTA 003120
003121 CCACTCCCAA TTTATACCAC TTTCCAAAAT CACACCACAC ATTATAAAAA CAATGATATG GATTGGTAAT TACAATAATA 003200
003201 CACCGTCAGA GGTAAAGGGA TACAATATGT CATGTAGACC AGTTATTTCT CAACGTATGG GTTCTATATC TGCAAAATAA 003280
003281 TGTATTgctt attacaaatt cagactacta ggctccatgt caaaacgaat caatttcaag ccaaggatgg aatccaagaa 003360
003361 tctgcatttt tgacaagctc cttaagatga tatgtgcatt aaggtttggg aaccattcat atagtcaaac tccttcatat 003440
003441 gacagataag gacatcatat gagagaagtt aagtgatttg gccaaagtgg acagccagtc agaggcagaa accagactca 003520
003521 cacttaaatc ttgactccta agctacaatt tttcCAGTTA TAAATAGTTT GTATTTATTT GTAAATTCCC GGTACACCTA 003600
003601 AATGAAAACG GAATTTGAGG TCTTTGTTCC TTGACATTCC CCAAAGGTTT AATACCAATA ATTTACTATT AATGGGCTCC 003680
003681 CAGCACTTGC TAAGTAAGCT GTTGTCTTCC GATTTAGGGA ATATCAACTA TAGAAGCTTG TGGACAAAGG TGTTTTGTTA 003760
003761 ACTTGTTACC ATCCCATTCC CCTTCACAAT AAGACATGCA AGTTCATTTA TCAACAAGAG CATATACTCA TTTTTCTCAA 003840
003841 ATCACAAGAG ACAATAAAAA GTAAATGGAA AACCCTGCTA CTAGTGTTAA ACAAGAATAT CCCAGCCTCT ATAACAACAT 003920
003921 ACCATATGGT ATTTCCCTAC CTTGTTCAGT ATTTAACCTA ACAATTTATT GCTAGGCTTC TTGGCAGCAA GCTGTGCAAG 004000
004001 TTGAAGTGGA ATCTGATTGA GGTGAGTTAA TTAATGTGGT GGCAGCTCGG AATGTTGTCC AGCTGCCAGT GAGAATTATG 004080
004081 TTTGTTTGCC TTTGGCCCAA GTGTGAAATG GCTGGCTGTT GATTTCAGAA GTGTGAGTGT ACATTTTTAT ATCTCACATG 004160
004161 AATGAATACA TTTTTTGTAT CCTACACATT TGGGGAAATG CTAAAATTTA TTGGGTCATG TTATTTACCA CTTGTGTGGC 004240
004241 AGAAAGAGAA AGGTGGAATT TTGCCCCAGA GGTTGACTTT GCATCTGTAG AAAAAGCAAA AGCAGGTGGC ATATAAATCC 004320
004321 ATGAGCAGGT AAATAAGCTG TCTGAAATTA GCTCATCTGG CCTAATGTTT TAAAGAATAA CTTTTAAAAG GAGGTAGGCA 004400
004401 AGATTTTTGA ACCAGAAAAG AATAACTCTT GTAATGATGA AAGGATTTTG AAAGTAGGAA ACATAGTTTT TAGATTTCCC 004480
004481 TGGAAAGACA TGGCTTTTGG ATTTACTGTT GACTTACATT TACAATTCTT ATTTTTACTA CACACAACCT TCTATTGAAT 004560
004561 ACATCATCTC ACTGTGCAAT CTTCCTTTCT ATCTATAACT GATGACAGTG ATTTCTGTGA TGTGTTCTTA ATGTTCTTGA 004640
004641 TAATTTTGAC TAGCTGTTAC TGATATGAGC AGGGGGTTCT CCAATTCAAG CAGTCAATAA CTGACACTAA ACTAACAAAG 004720
004721 TTCAAAGAAC ATTTGAAGTG TGTCAGATAT TATTCCCCTA TTTTTTTCTA TGTAATATCC TGTTAAGTTA AAATGCCTTG 004800
004801 AGAAAAGTTT ACCTTAGATT AAGGAAATAG ATACttaaaa atataatgta taaatatttc ttttatttta CCATTTTGAA 004880
004881 CAAAATTAAT ACACTAAAAG CAAAGGAAAT AGCATGGAAG TGATGTAAGA GCAAATAATA TGAAAAGTTT GCAAATCTAA 004960
004961 CAAAGCATTA CCAAAACCCT TTTTGATGAC AAGCAGATTT CCTTAAATTT TGATGTTACC ATGAGGATAT TAAGAAAACT 005040
005041 TTAAAATAAA AGTGTTCATA CTTTGGAAGA CATTCAATGA AATTAGTCTG GTAAAAAATC TAGTAAAAAT AGTATTTTAG 005120
005121 ATGCAGAAGT ATATAGAAAA AACACAAGTG AATTAGTGCA GATataggac catggattca cagaacttta gagaataaag 005200
005201 agaaagtaag gaaatttgaa taaagtatga atttagttag taataatgga ttgatatttg ctcattgatc attacaaatg 005280
005281 taccatactc atgtatgatg ttaataatag gagaaCTAGA CAGATTCCTA GGCTAAGTTT CTGTGCTGGT AAAATTCATA 005360
005361 TACATATGAA GTACTGAATG AATGGTATCA TTCTTAAGGT ATTATAACTT GTGTTGATGT CAGTAATCAT CTAGTACATG 005440
005441 ACAACTTCTA GAGATTCATA GGATTGTGAT ATTTGTTATG CTAAGGCCTC CTGAACAAAA ATGGCACTTT ATTTAGAAGG 005520
005521 TGCATCAGTG TATTAGTTAT TTGTGTTAAG AATTACCTCA Aggacaggtg cggtggctca tgcctgtaat cccagcactt 005600
005601 tgggaggcca aggcagatgg attacctgag ctcaggagtt cgagaccaaa aaaaaaaaaa aaaaaaaaaa aaGGGGGGGa 005680
005681 attacctcaa aatctggtag attaaagcac taaatattat ctcataattt ctgctgtggt tcaggaattt aagagcagct 005760
005761 tacctagggg gttctggctc agggtctctc atgaggttgc agtcaagatg tcatcctgaa ctagagttat ttTATTTTTT 005840
005841 TACACAATGA ATTACTTTTA TTTCGGTATG CATCCACATT TCAGCATTTA ATGGTCCTGA ACAGAAAGTG GAAAGACGCA 005920
005921 CCAATTTCCC AGGAGGTCAA GCCCGCCAAT TTCAGGGATC TGCTATGCAC ACTGGGTTCT TTCTTAATCC CTGCTGAGGA 006000
006001 TCTTGAGAAG CAGCAGCAGC ACCAAAACCA AGGCACGCAC TGGATTCAAG GTTCTTTTTG TTCCAGTTGT CAGATTCCAA 006080
006081 ACTAGACCTC AATGGATTGC AAGGATGACC AAATGAAAGC CCTGTTTAAA ACTTCTTCAG TTTTTAAAAG CAAAAGCAAT 006160
006161 TACAGGAAGT AAAACAATTC AGAGGGATCA CGTGTGCTTA CAAGTGTCTT CTTGTGGTCT TTCTCCAATT TCAACCACCA 006240
006241 AGGACTCCGA GAGCTGGCAG GTCTGAGTAA CCCTGGTGAC TTTCCTTTTC ACCTTATCAA AACCTGAGCT AAAAACAACG 006320
006321 CATCAGCTGA CGACAGCAGA GGGTGGCAGG GCTGAAAACC CAATATTCAT TTCCCAGGCT GATGGAGAAT GAATAAGTAT 006400
006401 GGTTCCAAAA CTAAACAAGG GAGGTTAGAG ACTTTCTAAC CTTACCTGAT GGCTTCTGCC CAAAGCAAGG AAGTGTCATG 006480
006481 GAAGGTATTG AGTGGTGATG GTGCAGAAAG CAACTTGAGG AGGGAAGAAA AAACAGCATC CCTCGATAAA GGTGGGGGAG 006560
006561 AGAAGATACT GGGAAAGCCC TGAATTCCTT ACCAAAGGCC AATCTTAGAG GGGAGCGGAG GGGTTACAAC CTATGCTTCT 006640
006641 GCCAAAGGCA GGAGTGGAGG AGTGTGGGGA CAGGATGACG GATTGGAAGG TGCATAAGAC TTAAAGAAAC CAGGGGTGCA 006720
006721 GGTGAAGCAC CCCACACACC TAGCAGTAGT CCCACAGGCT GCAACCTGAA ACCTTCACAT CCACTCTAAC AAGCCAAGCT 006800
006801 AGAGGGCTGT TGCAGGGAGG GTGGGAGGCA GGAGGGTAAG GGGAGAAGGC AGAGACCCCC AGGCCATGTA ATCAGCAAGG 006880
006881 TGATTGTGTG ATGTTTCTTT TCACAGTTGA GTTAGATATG CCCCACTAGT TATGATGGGA ATCAATTTAA TTAGAATTTC 006960
006961 TCGATTCCAG AAGTTCAACT ACGTGGACAG TGGTTACACT TGATAGGATG ATTTGTTATA GCAAAACTTA TATATTTC
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Predicted Small Protein

Name NONHSAT127942_smProtein_2930:3115
Length 62
Molecular weight 7056.5383
Aromaticity 0.131147540984
Instability index 40.8229508197
Isoelectric point 9.92547607422
Runs 7
Runs residual 0.0380629357452
Runs probability 0.0175637822697
Amino acid sequence MFLFRCAVLLYVQARLLEGTVSQLSPILQPKKMLTGTWVVIFRCSQSFFTRVLNCLLYIK
A
Secondary structure LLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEEEEEELLLHHHHHHHHHHHHLL
L
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL
L
PiMo ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiii
i