NONHSAT127942
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127942 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7038 nt |
Genomic location |
chr8+:100008217..100015451 |
Exon number |
2 |
Exons |
100008217..100013862,100014060..100015451 |
Genome context |
|
Sequence |
000001 GAAAAGTCAA GATTTTTTTT TTTTTCCTTT AGGCTGGGAA GACTAATCAG AGAGACTGCG AAGTAAAAGG GTTGTTTATG 000080
000081 ATTCACCATC AAACACATGT CTTTAATTAT CACTCTGAAT CCACATAACA ATATTCCTTT TTGGCACAAG GTCTGTACTA 000160 000161 GATGAATGAT AAAAAAGAGC CATAAGTGTG TAAGTGCCAT AAGTGTGTAG TATTCAGAGA CAGACAAGAT CCTCTCTAGT 000240 000241 TGCAGTGGTC AAAAAGTCTT ATCGAGTAGG AAGGCTTTGA CATGAACCTT TTTTTTCTAA GTTTAAAACT Attttattta 000320 000321 ttttttcaga gacagggtct tgctttgtca cccaggctgg agtgcagtgg cgggatcata gcagcctcaa gctcctaggc 000400 000401 tcaagtgatc ttcctgcctc agcctcccaa gtagttagga ctacagacat gtgccaccat gaccaactac gttttaaatt 000480 000481 tatttttgta gcaacagggt ctccgtatgt tgccctgtct ggtctcaaac tcctggcctc aagtaatcct cctatgtcgg 000560 000561 cctcccaaag cactggggtt acaggcatta gctactgttc ccagcTTTCA TTTGGACTTT AATGGATAAG GAAGACTTAG 000640 000641 AGcagcatta tcaaattctt tggccttagg acccctgtat aacactcttc aatattattg aggaccccaa acaggttttg 000720 000721 tttatatggg ttatatctat ctgtatttac catattagaa attaaaacag acaatttaca aatatttatt aatttatttt 000800 000801 aacctaaatt acatgttaac ataaatattt ttatgaacta tatttcccca aacaaaaaca gttagcaaag tggtattgtt 000880 000881 ttacattttg cattttaaca ggagacaggt gggttcttat atttgcttcc gttgtgatac tgcatgtcat gtagcctctg 000960 000961 gaaaactcta ctgtacacct gtaacagaat gagagtaaaa aggcaaatag catcttagta ttattatgag cgtaccattg 001040 001041 acattgtggg cccccgagaa gcactctgag aaccACTGAT TAAAAAAGAC TAAGGGCAAA ATAGAGGGAT GGCATAATTT 001120 001121 TAAaggtagg agggtataag gcatgttaca gagagagcaa acagaccaat ctggtagttg tgaaagattc acatggggga 001200 001201 ggtggaggag atatggctag aaatgtatac tgggggatcg tgttatatCA ATTAAAAAAT ACTAGCTTCC TTAATTATGA 001280 001281 CCATCTTCAC TGACCTCTAA TTTTGGCATC AGTAAGCTTC AGGGTAGGAA TGATAGAAGA GAAATTCATA TTGGTTTCAG 001360 001361 GCAACTCTAA AGTTATGTGG CTGACAGTAT TCTAATTGAT TTGTTGATTG CTTTATCTAT TTAatgtatt tagtgtttac 001440 001441 tacattcaaa gaagcaacat aagaactagt gatacaacga tgataaagac acagtctcta ctttatagga gctcccaatt 001520 001521 gagtggaaga ttcagatatt aaaataagca atacactcat taatctggag gaagacagag gagagggctg ctaactgtgc 001600 001601 ctgggtggtg tcatagacag cattgtacag gaaaccttta agTCCCAAAT ACTAATAACC ACTGATACAT GACCATGGTG 001680 001681 AGAAATACTT GATGTATAAG GATGACAGAT TCAGTACTAG AGTTAATACA GTAGTTCTGG TGAGATAGTC AGATAGTCTA 001760 001761 TAGAAAAATT TCCTGAATAT ATGTTCTCTT TTGAAAGTAA GAGTGTACAA ATTTTCTTTC TCCTAAAGCC CTGCAGCATC 001840 001841 TTTCTACTGC TAGGCCTGGG AGACACCATC AGTTATCTTA ATGTCTCTAT TTTCTTCAGT TTGATCACCT TTTTAAATCT 001920 001921 TTTTGTTCTC TGTGACTCAG TAACAAGAGT GAAGGGGAGG AAGAAATTTA GGTAATTACA ACAGCTTTAA ACTAAGAACT 002000 002001 GAGAACACCT TTACTAACCC AACTAATTAT GATTAAATAC GTAAATAGAG AACCTATCTC CCAGCACCAC CTGCAGGGGA 002080 002081 TGAGGAAGTC TGCAACAGGA TTCAACACTT CCTTTTCTGC CAACATATCT TTAGCCCAAC ATTCCATTAT TGAGAATCTA 002160 002161 CCAAGTTAAG AGCCTGCTTT TAGTGGCTGA GGAGAATACA AAGACCAATA AGGATAATCT ACCCATACTC TGAGGAACAT 002240 002241 TATTAAAACT TGGGGATGTT TGTGATAATT AAAATAGCTT GGAAAGAACT GATTAAATCG AAGAGAATCA GACTTCTTTT 002320 002321 GTGAAGATTG AATAGTAAAG CAACTACTGC ATTGCCATTT TACATCCCCC ACTGATAGAA ACTAATAACA AAGGTGATTC 002400 002401 CACAGTTTTA AAAGTAAAAT AATAATGATT AGTTTTGGAT CTTCAAGTCT GTTAAGTTTG CAATATGATG GGAAAAGCCT 002480 002481 GTGTTGCACA CCATCTTATA TGGACCTGTT AAGCATGCTC TTTTCCTAAT TTAAGGCTGG CCCCAGACAG CTACCTTAGG 002560 002561 GCTCTCTGCT AGTCATTAGA GGAATCAGAT GGAAAAAGAT ACATGGATTA GTATAAATCC ATATGCACCT ATTCAGTAAG 002640 002641 TAATAAGAAC TTTTTCCAGT AAGAGCTTTT TCTTTACTTA TCAAATCATG TCCTAGAATT TAAAGAGAAT GAGGTTTTCA 002720 002721 AAAGTTCCTA GTCTTTTGAA ATCTCACAAA CAAGGATAAA ATATTTGTTT TTTGATTTCA GAATTTAACA AAGAAGCAGA 002800 002801 ATATACCAGA CACACAAGAA GCAAAAGAAA TGAAATGAGC ATTCATAACA ACACGCTTAG AGCACAGAAA GCCTTATCCT 002880 002881 GGGTGAGTGA TCAGGAATAT GAATAAAGCT GATCTGTAGG ATGGCTTTCA ATGTTTTTGT TTAGATGTGC AGTCTTACTA 002960 002961 TATGTACAGG CAAGATTACT AGAGGGAACA GTCAGTCAGC TATCACCCAT CCTACAACCC AAGAAAATGC TCACAGGCAC 003040 003041 CTGGGTAGTC ATATTCAGGT GTTCTCAGTC TTTTTTCACT AGAGTTTTGA ACTGCCTATT GTATATTAAG GCTTGAGTTA 003120 003121 CCACTCCCAA TTTATACCAC TTTCCAAAAT CACACCACAC ATTATAAAAA CAATGATATG GATTGGTAAT TACAATAATA 003200 003201 CACCGTCAGA GGTAAAGGGA TACAATATGT CATGTAGACC AGTTATTTCT CAACGTATGG GTTCTATATC TGCAAAATAA 003280 003281 TGTATTgctt attacaaatt cagactacta ggctccatgt caaaacgaat caatttcaag ccaaggatgg aatccaagaa 003360 003361 tctgcatttt tgacaagctc cttaagatga tatgtgcatt aaggtttggg aaccattcat atagtcaaac tccttcatat 003440 003441 gacagataag gacatcatat gagagaagtt aagtgatttg gccaaagtgg acagccagtc agaggcagaa accagactca 003520 003521 cacttaaatc ttgactccta agctacaatt tttcCAGTTA TAAATAGTTT GTATTTATTT GTAAATTCCC GGTACACCTA 003600 003601 AATGAAAACG GAATTTGAGG TCTTTGTTCC TTGACATTCC CCAAAGGTTT AATACCAATA ATTTACTATT AATGGGCTCC 003680 003681 CAGCACTTGC TAAGTAAGCT GTTGTCTTCC GATTTAGGGA ATATCAACTA TAGAAGCTTG TGGACAAAGG TGTTTTGTTA 003760 003761 ACTTGTTACC ATCCCATTCC CCTTCACAAT AAGACATGCA AGTTCATTTA TCAACAAGAG CATATACTCA TTTTTCTCAA 003840 003841 ATCACAAGAG ACAATAAAAA GTAAATGGAA AACCCTGCTA CTAGTGTTAA ACAAGAATAT CCCAGCCTCT ATAACAACAT 003920 003921 ACCATATGGT ATTTCCCTAC CTTGTTCAGT ATTTAACCTA ACAATTTATT GCTAGGCTTC TTGGCAGCAA GCTGTGCAAG 004000 004001 TTGAAGTGGA ATCTGATTGA GGTGAGTTAA TTAATGTGGT GGCAGCTCGG AATGTTGTCC AGCTGCCAGT GAGAATTATG 004080 004081 TTTGTTTGCC TTTGGCCCAA GTGTGAAATG GCTGGCTGTT GATTTCAGAA GTGTGAGTGT ACATTTTTAT ATCTCACATG 004160 004161 AATGAATACA TTTTTTGTAT CCTACACATT TGGGGAAATG CTAAAATTTA TTGGGTCATG TTATTTACCA CTTGTGTGGC 004240 004241 AGAAAGAGAA AGGTGGAATT TTGCCCCAGA GGTTGACTTT GCATCTGTAG AAAAAGCAAA AGCAGGTGGC ATATAAATCC 004320 004321 ATGAGCAGGT AAATAAGCTG TCTGAAATTA GCTCATCTGG CCTAATGTTT TAAAGAATAA CTTTTAAAAG GAGGTAGGCA 004400 004401 AGATTTTTGA ACCAGAAAAG AATAACTCTT GTAATGATGA AAGGATTTTG AAAGTAGGAA ACATAGTTTT TAGATTTCCC 004480 004481 TGGAAAGACA TGGCTTTTGG ATTTACTGTT GACTTACATT TACAATTCTT ATTTTTACTA CACACAACCT TCTATTGAAT 004560 004561 ACATCATCTC ACTGTGCAAT CTTCCTTTCT ATCTATAACT GATGACAGTG ATTTCTGTGA TGTGTTCTTA ATGTTCTTGA 004640 004641 TAATTTTGAC TAGCTGTTAC TGATATGAGC AGGGGGTTCT CCAATTCAAG CAGTCAATAA CTGACACTAA ACTAACAAAG 004720 004721 TTCAAAGAAC ATTTGAAGTG TGTCAGATAT TATTCCCCTA TTTTTTTCTA TGTAATATCC TGTTAAGTTA AAATGCCTTG 004800 004801 AGAAAAGTTT ACCTTAGATT AAGGAAATAG ATACttaaaa atataatgta taaatatttc ttttatttta CCATTTTGAA 004880 004881 CAAAATTAAT ACACTAAAAG CAAAGGAAAT AGCATGGAAG TGATGTAAGA GCAAATAATA TGAAAAGTTT GCAAATCTAA 004960 004961 CAAAGCATTA CCAAAACCCT TTTTGATGAC AAGCAGATTT CCTTAAATTT TGATGTTACC ATGAGGATAT TAAGAAAACT 005040 005041 TTAAAATAAA AGTGTTCATA CTTTGGAAGA CATTCAATGA AATTAGTCTG GTAAAAAATC TAGTAAAAAT AGTATTTTAG 005120 005121 ATGCAGAAGT ATATAGAAAA AACACAAGTG AATTAGTGCA GATataggac catggattca cagaacttta gagaataaag 005200 005201 agaaagtaag gaaatttgaa taaagtatga atttagttag taataatgga ttgatatttg ctcattgatc attacaaatg 005280 005281 taccatactc atgtatgatg ttaataatag gagaaCTAGA CAGATTCCTA GGCTAAGTTT CTGTGCTGGT AAAATTCATA 005360 005361 TACATATGAA GTACTGAATG AATGGTATCA TTCTTAAGGT ATTATAACTT GTGTTGATGT CAGTAATCAT CTAGTACATG 005440 005441 ACAACTTCTA GAGATTCATA GGATTGTGAT ATTTGTTATG CTAAGGCCTC CTGAACAAAA ATGGCACTTT ATTTAGAAGG 005520 005521 TGCATCAGTG TATTAGTTAT TTGTGTTAAG AATTACCTCA Aggacaggtg cggtggctca tgcctgtaat cccagcactt 005600 005601 tgggaggcca aggcagatgg attacctgag ctcaggagtt cgagaccaaa aaaaaaaaaa aaaaaaaaaa aaGGGGGGGa 005680 005681 attacctcaa aatctggtag attaaagcac taaatattat ctcataattt ctgctgtggt tcaggaattt aagagcagct 005760 005761 tacctagggg gttctggctc agggtctctc atgaggttgc agtcaagatg tcatcctgaa ctagagttat ttTATTTTTT 005840 005841 TACACAATGA ATTACTTTTA TTTCGGTATG CATCCACATT TCAGCATTTA ATGGTCCTGA ACAGAAAGTG GAAAGACGCA 005920 005921 CCAATTTCCC AGGAGGTCAA GCCCGCCAAT TTCAGGGATC TGCTATGCAC ACTGGGTTCT TTCTTAATCC CTGCTGAGGA 006000 006001 TCTTGAGAAG CAGCAGCAGC ACCAAAACCA AGGCACGCAC TGGATTCAAG GTTCTTTTTG TTCCAGTTGT CAGATTCCAA 006080 006081 ACTAGACCTC AATGGATTGC AAGGATGACC AAATGAAAGC CCTGTTTAAA ACTTCTTCAG TTTTTAAAAG CAAAAGCAAT 006160 006161 TACAGGAAGT AAAACAATTC AGAGGGATCA CGTGTGCTTA CAAGTGTCTT CTTGTGGTCT TTCTCCAATT TCAACCACCA 006240 006241 AGGACTCCGA GAGCTGGCAG GTCTGAGTAA CCCTGGTGAC TTTCCTTTTC ACCTTATCAA AACCTGAGCT AAAAACAACG 006320 006321 CATCAGCTGA CGACAGCAGA GGGTGGCAGG GCTGAAAACC CAATATTCAT TTCCCAGGCT GATGGAGAAT GAATAAGTAT 006400 006401 GGTTCCAAAA CTAAACAAGG GAGGTTAGAG ACTTTCTAAC CTTACCTGAT GGCTTCTGCC CAAAGCAAGG AAGTGTCATG 006480 006481 GAAGGTATTG AGTGGTGATG GTGCAGAAAG CAACTTGAGG AGGGAAGAAA AAACAGCATC CCTCGATAAA GGTGGGGGAG 006560 006561 AGAAGATACT GGGAAAGCCC TGAATTCCTT ACCAAAGGCC AATCTTAGAG GGGAGCGGAG GGGTTACAAC CTATGCTTCT 006640 006641 GCCAAAGGCA GGAGTGGAGG AGTGTGGGGA CAGGATGACG GATTGGAAGG TGCATAAGAC TTAAAGAAAC CAGGGGTGCA 006720 006721 GGTGAAGCAC CCCACACACC TAGCAGTAGT CCCACAGGCT GCAACCTGAA ACCTTCACAT CCACTCTAAC AAGCCAAGCT 006800 006801 AGAGGGCTGT TGCAGGGAGG GTGGGAGGCA GGAGGGTAAG GGGAGAAGGC AGAGACCCCC AGGCCATGTA ATCAGCAAGG 006880 006881 TGATTGTGTG ATGTTTCTTT TCACAGTTGA GTTAGATATG CCCCACTAGT TATGATGGGA ATCAATTTAA TTAGAATTTC 006960 006961 TCGATTCCAG AAGTTCAACT ACGTGGACAG TGGTTACACT TGATAGGATG ATTTGTTATA GCAAAACTTA TATATTTC |
Predicted Small Protein
Name | NONHSAT127942_smProtein_2930:3115 |
Length | 62 |
Molecular weight | 7056.5383 |
Aromaticity | 0.131147540984 |
Instability index | 40.8229508197 |
Isoelectric point | 9.92547607422 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0175637822697 |
Amino acid sequence | MFLFRCAVLLYVQARLLEGTVSQLSPILQPKKMLTGTWVVIFRCSQSFFTRVLNCLLYIK A |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEEEEEELLLHHHHHHHHHHHHLL L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL L |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiii i |