NONHSAT128182
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT128182 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3228 nt |
Genomic location |
chr8-:104410866..104427563 |
Exon number |
8 |
Exons |
104410866..104412774,104413744..104413889,104414169..104414282,104415392..104415552,104417004..104417089,104419862..104420012,104425651..104425759,104427012..104427563 |
Genome context |
|
Sequence |
000001 ACTCGCGGAG CGGCGGCCTG CTGGCTCAAC TGGATCCTGC GCCGCTCCGT AGTTTTGCCG GCAAACGTTA GCAAGGGGCG 000080
000081 GTTCTTTAGC TGTGCAGTCG CTTCCGCGTC CGTGGGCTGG AGCATTTGTG GGCGAGGCAG GGCGGAGACT CGGGAGAGGC 000160 000161 TGGGACCTCC CCTCCATCGC GCTTTCCGCC GGCGTGACGT AGTGTCTGTG CCCCGTTCTT GCCCCCTCAG TACTAGAGTC 000240 000241 TCCGGCTTCG CTCACGCGCC TTGGGCATAA GAGTCCTCTC GTTGGTCCCG GAGGTGGGGT TGCGCTCACA AGGGGCGACC 000320 000321 GTCGCCACGG TGGCGGCCAC TGCATCGCGT CCCACCTCCG CGGCCCTGGG CGCCGTGGTG TCGACGGGCC CCGAGCCTAT 000400 000401 GACGGGCCAG GGCCAGTCGG CGTCCGGGTC GTCGGCGTGG AGCACGGTAT TCCGCCACGT CCGGTATGAG AACCTGATAG 000480 000481 CGGGCGTGAG CGGCGGCGTC TTATCCAACC TTGCGCTGCA TCCGCTCGAC CTCGTGAAGA TCCGCTTCGC CGgaacaatc 000560 000561 ctgtgagttt atgatatctg ctatacagat gaggataaca gaagttgact aacttgccca agtcacaagt ttgtaaagat 000640 000641 ggatctggga tttaaaccca gTGAGTGATG GATTGGAACT GAGACCGAAA TATAATGGAA TTTTACATTG CTTGACTACC 000720 000721 ATTTGGAAAC TTGATGGACT ACGGGGACTT TATCAAGGAG TAACCCCAAA TATATGGGGT GCAGGTTTAT CCTGGGGACT 000800 000801 CTACTTTTTC TTTTACAATG CCATCAAGTC ATATAAAACA GAAGGAAGAG CTGAACGTTT AGAGGCAACA GAATACCTTG 000880 000881 TCTCAGCTGC TGAAGCTGGA GCCATGACCC TCTGCATTAC AAACCCATTA TGGGTAACAA AAACTCGCCT TATGTTACAG 000960 000961 TATGATGCTG TTGTTAACTC CCCACACCGA CAATATAAAG GAATGTTTGA TACACTTGTG AAAATATATA AGTATGAAGG 001040 001041 TGTGCGTGGA TTATATAAGG GATTTGTTCC TGGGCTGTTT GGAACATCGC ATGGTGCCCT TCAGTTTATG GCATATGAAT 001120 001121 TGCTGAAGTT GAAGTACAAC CAGCATATCA ATAGATTACC AGAAGCCCAG TTGAGCACAG TAGAATATAT ATCTGTTGCA 001200 001201 GCACTATCCA AAATATTTGC TGTCGCAGCA ACATACCCAT ATCAAGTCGT AAGAGCTCGT CTTCAGGATC AACACATGTT 001280 001281 TTACAGTGGT GTAATAGATG TAATCACAAA GACATGGAGG AAAGAAGGCG TCGGTGGATT TTACAAGGGA ATTGCTCCTA 001360 001361 ATTTGATTAG AGTGACTCCA GCCTGCTGTA TTACCTTTGT GGTATATGAA AACGTCTCAC ATTTTTTACT TGACCTTAGA 001440 001441 GAAAAGAGAA AGTAAGCTCA AAGAGGACAA TTCCAGTATA TCTGCCCAAG GCAGCAACAA GCTCTTTTGT GTTTAAGGCA 001520 001521 TAAAAGAAGA ATTCTGCATA GAAACATGGC TCATATTCGA AATTGCTCTA TAGTCATTAG AAGCCAGAGA ACTGCTAAGT 001600 001601 CTCCTGCAAT GTTTTTCTTG CTTTTTGCCT TCCCCATATA TATGGAACTT GGCTACCTCT GCCTGAAATG GCTGCCATCA 001680 001681 ACACAATGTT AAAACTGACA CGAAGGATAG AGTTTCACAG ATTTCTACGT TTTATTGGTG GAAGCTGATT TGCAACATTT 001760 001761 GCTAAATGGA TTAGATGAAT GTACTTCTTT TTGTGAGCTT ACTTGCCTGG ATTGCTTTAA AATTAACCTT TGTGCAATAC 001840 001841 CAAGAAAATA GCTCTTTAAA AGAATGTCTT TGTATGTCTC AAGGTAAATT AAGGATTTAC TGAATAAGGT GTTGACCAAA 001920 001921 TCCAGACCAT TTTAttttat ttttttattt atttattttt tgagatggag tcttgctttg tcgcccaggc tggagtgcag 002000 002001 tggcgtgatc tcagctcact gcaacctcca cctcccgggt tcacgccatt ctcctgcctc agcctcctga gtagctggga 002080 002081 ctacaggcac ctgccaccac gcctggctaa ctttttttta tattttgagt agaaatgggg tttcaccatg ttagccagga 002160 002161 tggtctcaat ctcctgacct tgtgatccgc ctgccttggc ctcccaaagt gctgggatta caggcgtgag ccactgcgcc 002240 002241 tggccAGACC ATTTTAGAAT TGGGAAATTT TAGTGAGAAA AAATGCACTG TAAATATGCT TTAGTTTTAA TTCAGTTGGG 002320 002321 ATGCACTACC TAGCGAAAAT TGAGAAACTA TATACTTCTC AGAGAAATAT CTGACATCTA TTGTCATTCC ATTGCTATTT 002400 002401 TTTTTCCCCA GAGACTTCCA TAATTTAAAA TAAAATCCTA GATCCAGTTC TTGTTTTTTG GCATAAATAC TTAATCTATT 002480 002481 TTAAATTTAT AAAATCTGAG CTTCTAGGAT CCAGCTGTGT CAACCTTTAT TTAGCATATA TAACTATAAA TCACTTATTA 002560 002561 CAGATGCTAA ATAGATCACC TTTTACAGAT GCTGAAATGT TTGGGATATG TTTGTTGACA AGGTAAATGG AAATGAGAAA 002640 002641 CTTTATACTT CAGTTTTCAG ATATATGGAT CTAGATCCCA AATAAATGAT TAATCTTCAT TGGTTTCTCA AATTCAGGTT 002720 002721 GAAATACAAA TTAATAGCCT TTATTGATTT TACTTTTATG AGTCATTGTA GACATCTATA AATATAAAAG GGCCTGTACC 002800 002801 CAAAGGATGC CAGAATACTA GTATTTTTAT TTATCGTAAA CATCCACGAG TGCTGTTGCA CTACCATCTA TTTGTTGTAA 002880 002881 ATAAAAGTGT TGTTTTCAAA GCCATCTTTA AATAGTTCTT TAAAAATAGG TCTTTTTTTT ATATTTTGGA AAAGGCATTG 002960 002961 TTTTTAAAGT AAAGATAAAA TGGTAAGTAC CTAATTGTAT TTACTGTAAT ATCTTATAAC ATGCAGATGA ATGCTTTATA 003040 003041 AGTTAAATAT GATGTATTTT TTCATACTTC TGGATTATAC TATAATTCAT ATGAAATCTT GATATTAGTC CCCACACGGA 003120 003121 AAAAGTGAAC TGCAGTTGAT ATTTGGTGTT TAAGATAGCA CCATTGTTTA AATACCGCCT ATGTACTCCC aaatgaataa 003200 003201 aacataattc ttgtcctctg agagcata |
Predicted Small Protein
Name | NONHSAT128182_smProtein_1964:2131 |
Length | 56 |
Molecular weight | 6351.206 |
Aromaticity | 0.181818181818 |
Instability index | 62.4436363636 |
Isoelectric point | 5.58160400391 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.0493640699524 |
Amino acid sequence | MESCFVAQAGVQWRDLSSLQPPPPGFTPFSCLSLLSSWDYRHLPPRLANFFLYFE |
Secondary structure | LLLEEEEELLEEEEELLLLLLLLLLLLLHHHHHHLLLLLLLLLLHHHHHHEEEEL |
PRMN | - |
PiMo | - |