NONHSAT128277
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128277 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4068 nt |
Genomic location |
chr8+:109559983..109566595 |
Exon number |
4 |
Exons |
109559983..109560605,109562071..109562127,109562478..109562529,109563260..109566595 |
Genome context |
|
Sequence |
000001 TGAATCTGAG TTTCCTTACT CACTGTGCAT TAAAACACAT TTTCTTGTTA ACATTATATT ATTTTTAAAC TTCTTTGAAA 000080
000081 TGAGTTTGGA AGGGAAAGTC ATTTTGCTGA AAGCTTGCAC CTTTCTCATT TGAATCAAAG GACCGTACTC TGTCTGTTAC 000160 000161 CAAGCATCGG AAACACATGG TGGGGCCAGC TGCCTCAGGT AAGTACCGTG TACTAAGGGA ATTCTTTGCA GAAGGAGAGA 000240 000241 TCTGAAATCA ACTGCCAGAT GAGGAATCAG ACAACAGGGG GAAAAAAAAG AGAGAGAGAA GAGTACAAGA AAGAAATGGT 000320 000321 TAGGGCATCT GATAGATATT GGTCTTGGTG TGATGACCTG ATGTTGAAGT TAAAACACCA CCACCAGCCC TAAAGTTAGG 000400 000401 TTCATGTAAT TTTTAGTTGT GTTCAGTCTT TATGGGACAA ATTCCAAATC CTACAATGGC TTCACTTTGA CAGGCCTTTT 000480 000481 GTCTATTCAA ACCATATTTC TTTCTACTAC AGGTTAATAT TATTGAAAGA TCATATTTTG ATGTTTCTGG TTTCTGGAAA 000560 000561 GTTTGTGAGA TCAAAGTAAA TGAAAACCAG GACTTTTAGC TATGTTCTTA CCACCTTTTC AAGAAACTGG GAAATCTGCC 000640 000641 CATGGACTCT TGGGTTTCTT AAAAACTCAG CTTAAAAATC AATACGTTGT TCTCCCTGCT TCATACTCCC ATGATGCTTG 000720 000721 GTCATAATGG TGGAATCACA GCTATTGTTC AACTCACTGG AATTTGGTGG AAGTTGGAAG AGTTTACATC TCATAGTAAT 000800 000801 CTACAATTCA ATAAATGTAA TAATTGCATG ACAGGAGCTG CTTCCTCAAC AGTGAGGTAA AAAAGAGGCA TAAAGGAGGC 000880 000881 CAAGAAGACC ACCGTGGTGA AGCATGAAAG TAAAGGAGAT TTTTAGCAAT GAAGACAGAG TGTCCTGAGG TTTTATTCTT 000960 000961 ATGCACGAGA CCCAGATTTC CTGGAAGAGC CCCTCCTAAA GGTTTGGCTC TGCACAAGCT CCAATATTCC TACTAAATTA 001040 001041 TATCACAGGA GCAGAGACTG GAAGATTGTT TGGATCTCAT TGAGTGAGtt gcttctattg cccattccac aaattatctg 001120 001121 cttcctgcta atcccctcat ttgcagattc ggcaaacaaa cacggcttct gtgtggattt ccaaaaaagt aggcagaaga 001200 001201 gaaaagagta ggactcatga cagagctgtt acattccaGC AAACACATGA AGCATTGCAT CCCAAAGAGG CCACAGACTA 001280 001281 AGCCTTAGTA ATAAGGCATC CAAACTCTGT TACAAACATG TGGAGAGCTA TTCTGGACCT TTGCTTCTGA AGTAAAATCT 001360 001361 AACTGTTACT TGGTCTCCAC AAACAGAAGG CAAACTATTT AGTTTGCTTT GAATATGAAA TGGAAATTGG aaaaaaagtc 001440 001441 caagaccaga tgaatttaca gctgacttct accatatgta caaagaagag ctggtgccat ttctactgaa actgtttcaa 001520 001521 aaaattgaga agggactcct ccatctcatt ctatgaggcc agcattatcc tgatattaaa acctggcaga gacacaacaa 001600 001601 aaaagaaaac ttcaggccaa tatcctcgat caacattgat gtaaatatct tcaataaaat aatagcaaac taaatctagc 001680 001681 agcacatcaa aaaactaatc caccatgatc aagtaggctt tattcctggg atgcaatgtt ggtttaacat gaagatcaat 001760 001761 aaatgtgatt catcacataa acagaactaa agacaaaaac aacataatta ccttaacaga tgcagaaaaa gcttttgata 001840 001841 aaattcaaca tgttaaaact tcatgttaaa aactctcaat aaactaagta ttgaaggaac atacctcaaa acaataatac 001920 001921 ccatctagga caagcccaca gccaacatca tactgaatga ccaaaaggtg gaagcattcc ccttgaaaac tggcacaaga 002000 002001 caaagatgcc ctctctcacc actccaattc aacatagtat tggaagtgct gccagggtaa tcaggaaaga gaaagaaata 002080 002081 aagggcatcc aaataggaaa agaggaagtc aaactattcc tgtttgcaga cagtgtgact gtatatctag aaaaccctat 002160 002161 aatttcagcc caaaagatcc ttcagctgat gaacaacgtc agcaaagttt gaggacacaa aatcaatgta caaaaatcac 002240 002241 tagctttcct atacaccacc aacagccaag ccaagagcca aatcaggaag gcaatcccat tcacaattgc tacaaaaaga 002320 002321 ataaaatatc taggaataca cctaaccagg gaggtgaaat atctttataa tgagaattac aaaacactgc tcaaagaaat 002400 002401 cagagaagac acaaacatgg aaaaacattc catgctcatg gatcagaaga atcaatatca ttaaaacagc catactgccc 002480 002481 aaagcaattt atagatccaa tgctattcct atcaaactaa caatgacatt ctttacagaa ctagaagaaa aacttttaaa 002560 002561 atgcttatgg aaccaaaata gagcccgaat agccaagcaa aaagaacaaa gctggaggta tcacactacc tgacttcaaa 002640 002641 ctatactcag tgctacagta accaaaacag catggtattg gtacaaaaac agccacataa accaatgaaa cagaatagag 002720 002721 agcccagaaa caaggcttca cacctatagc caactgattt ttgaccaagc tgacaaagac aagcaatgga gaaaggattc 002800 002801 cccatttaat taatggtcct gggatagctt tttagtgata tgcaaaagat cgaaattgga cctctttctt acaccatata 002880 002881 caaaggtgga ttaaagactt aaatgtaaaa cccaaaacta taaaaaaccc tggaagacaa cctgggcaat accattctgg 002960 002961 atacaggaac tggcaaagat ttcatgagga ggacaccaaa agcaattgca acaaaagtaa aaattgacaa atgggatata 003040 003041 attaaagagc ttctgcacag caaaagaaac tgtcaacaga gtaaacagaa atcctacata atgagagaaa gtatttgcaa 003120 003121 actatacatc tgacaaagac ctaatatcca gcatctataa gaaacttaaa cagatttaca agaaaaaaca aataaccttc 003200 003201 ttaaaaagtg ggcaaaagac atgaacagac acttttcaaa gtaagacata catgtgggca aaggacatga acagacactt 003280 003281 ttcaaagtaa gacatacatg tagccaaaaa accatataaa aagaaagctc aatatctgat cagtagagaa atgcaaatca 003360 003361 aaaccacaat gagataccat ctcaaacaag tcaaaatggc taccattcaa aagtcaaaaa ataacagatg ctggtgagat 003440 003441 tacagagaaa aaggaacact tatacactgt tggtgggagt atgaattagt tcagtcattg tagaaagcag tgtggtgatt 003520 003521 cctcaaagag ataaaaacag aactaccatt tgacccagaa atcccattac tggttatata accaaagcaa tataaattgt 003600 003601 tgcatcataa agacacatgc acacatatgt ttattgcagc actattcaca ataacaaaga catagaatcg acctaaatgt 003680 003681 ccatcaatgg tagactgcat aatgaaaatg tggtacgtat gcaccatgga atactacgta gccataagaa agaatgaaat 003760 003761 catgtccttt gcagcaacat ggatcgagct ggaggtcatt atccttaaca agctaatgca ggaacagaaa atcaaatacc 003840 003841 acatgttctc acttataagt gggagctaaa tgatgagaac tcatgaacac aaagagggga acaacagaca ctggggccta 003920 003921 tcagagggtg aaggttagga ggagggagag gatcagaaaa aataactatg gtatactagg tgacaaaatt atttgtacac 004000 004001 caaaccccca tgacatgcag tttacctatg taacaaacct gcacgtatac ctctgaatct aaaataaa |
Predicted Small Protein
Name | NONHSAT128277_smProtein_2369:2632 |
Length | 88 |
Molecular weight | 10505.3514 |
Aromaticity | 0.0919540229885 |
Instability index | 48.6517241379 |
Isoelectric point | 10.3903198242 |
Runs | 11 |
Runs residual | 0.0118226600985 |
Runs probability | 0.0189414012943 |
Amino acid sequence | MRITKHCSKKSEKTQTWKNIPCSWIRRINIIKTAILPKAIYRSNAIPIKLTMTFFTELEE KLLKCLWNQNRARIAKQKEQSWRYHTT |
Secondary structure | LLEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHHHLLLLLLEEEELHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooo ooooooooooooooooooooooooooo |