NONHSAT128277

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT128277

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4068 nt

Genomic location

chr8+:109559983..109566595

Exon number

4

Exons

109559983..109560605,109562071..109562127,109562478..109562529,109563260..109566595

Genome context

Sequence
000001 TGAATCTGAG TTTCCTTACT CACTGTGCAT TAAAACACAT TTTCTTGTTA ACATTATATT ATTTTTAAAC TTCTTTGAAA 000080
000081 TGAGTTTGGA AGGGAAAGTC ATTTTGCTGA AAGCTTGCAC CTTTCTCATT TGAATCAAAG GACCGTACTC TGTCTGTTAC 000160
000161 CAAGCATCGG AAACACATGG TGGGGCCAGC TGCCTCAGGT AAGTACCGTG TACTAAGGGA ATTCTTTGCA GAAGGAGAGA 000240
000241 TCTGAAATCA ACTGCCAGAT GAGGAATCAG ACAACAGGGG GAAAAAAAAG AGAGAGAGAA GAGTACAAGA AAGAAATGGT 000320
000321 TAGGGCATCT GATAGATATT GGTCTTGGTG TGATGACCTG ATGTTGAAGT TAAAACACCA CCACCAGCCC TAAAGTTAGG 000400
000401 TTCATGTAAT TTTTAGTTGT GTTCAGTCTT TATGGGACAA ATTCCAAATC CTACAATGGC TTCACTTTGA CAGGCCTTTT 000480
000481 GTCTATTCAA ACCATATTTC TTTCTACTAC AGGTTAATAT TATTGAAAGA TCATATTTTG ATGTTTCTGG TTTCTGGAAA 000560
000561 GTTTGTGAGA TCAAAGTAAA TGAAAACCAG GACTTTTAGC TATGTTCTTA CCACCTTTTC AAGAAACTGG GAAATCTGCC 000640
000641 CATGGACTCT TGGGTTTCTT AAAAACTCAG CTTAAAAATC AATACGTTGT TCTCCCTGCT TCATACTCCC ATGATGCTTG 000720
000721 GTCATAATGG TGGAATCACA GCTATTGTTC AACTCACTGG AATTTGGTGG AAGTTGGAAG AGTTTACATC TCATAGTAAT 000800
000801 CTACAATTCA ATAAATGTAA TAATTGCATG ACAGGAGCTG CTTCCTCAAC AGTGAGGTAA AAAAGAGGCA TAAAGGAGGC 000880
000881 CAAGAAGACC ACCGTGGTGA AGCATGAAAG TAAAGGAGAT TTTTAGCAAT GAAGACAGAG TGTCCTGAGG TTTTATTCTT 000960
000961 ATGCACGAGA CCCAGATTTC CTGGAAGAGC CCCTCCTAAA GGTTTGGCTC TGCACAAGCT CCAATATTCC TACTAAATTA 001040
001041 TATCACAGGA GCAGAGACTG GAAGATTGTT TGGATCTCAT TGAGTGAGtt gcttctattg cccattccac aaattatctg 001120
001121 cttcctgcta atcccctcat ttgcagattc ggcaaacaaa cacggcttct gtgtggattt ccaaaaaagt aggcagaaga 001200
001201 gaaaagagta ggactcatga cagagctgtt acattccaGC AAACACATGA AGCATTGCAT CCCAAAGAGG CCACAGACTA 001280
001281 AGCCTTAGTA ATAAGGCATC CAAACTCTGT TACAAACATG TGGAGAGCTA TTCTGGACCT TTGCTTCTGA AGTAAAATCT 001360
001361 AACTGTTACT TGGTCTCCAC AAACAGAAGG CAAACTATTT AGTTTGCTTT GAATATGAAA TGGAAATTGG aaaaaaagtc 001440
001441 caagaccaga tgaatttaca gctgacttct accatatgta caaagaagag ctggtgccat ttctactgaa actgtttcaa 001520
001521 aaaattgaga agggactcct ccatctcatt ctatgaggcc agcattatcc tgatattaaa acctggcaga gacacaacaa 001600
001601 aaaagaaaac ttcaggccaa tatcctcgat caacattgat gtaaatatct tcaataaaat aatagcaaac taaatctagc 001680
001681 agcacatcaa aaaactaatc caccatgatc aagtaggctt tattcctggg atgcaatgtt ggtttaacat gaagatcaat 001760
001761 aaatgtgatt catcacataa acagaactaa agacaaaaac aacataatta ccttaacaga tgcagaaaaa gcttttgata 001840
001841 aaattcaaca tgttaaaact tcatgttaaa aactctcaat aaactaagta ttgaaggaac atacctcaaa acaataatac 001920
001921 ccatctagga caagcccaca gccaacatca tactgaatga ccaaaaggtg gaagcattcc ccttgaaaac tggcacaaga 002000
002001 caaagatgcc ctctctcacc actccaattc aacatagtat tggaagtgct gccagggtaa tcaggaaaga gaaagaaata 002080
002081 aagggcatcc aaataggaaa agaggaagtc aaactattcc tgtttgcaga cagtgtgact gtatatctag aaaaccctat 002160
002161 aatttcagcc caaaagatcc ttcagctgat gaacaacgtc agcaaagttt gaggacacaa aatcaatgta caaaaatcac 002240
002241 tagctttcct atacaccacc aacagccaag ccaagagcca aatcaggaag gcaatcccat tcacaattgc tacaaaaaga 002320
002321 ataaaatatc taggaataca cctaaccagg gaggtgaaat atctttataa tgagaattac aaaacactgc tcaaagaaat 002400
002401 cagagaagac acaaacatgg aaaaacattc catgctcatg gatcagaaga atcaatatca ttaaaacagc catactgccc 002480
002481 aaagcaattt atagatccaa tgctattcct atcaaactaa caatgacatt ctttacagaa ctagaagaaa aacttttaaa 002560
002561 atgcttatgg aaccaaaata gagcccgaat agccaagcaa aaagaacaaa gctggaggta tcacactacc tgacttcaaa 002640
002641 ctatactcag tgctacagta accaaaacag catggtattg gtacaaaaac agccacataa accaatgaaa cagaatagag 002720
002721 agcccagaaa caaggcttca cacctatagc caactgattt ttgaccaagc tgacaaagac aagcaatgga gaaaggattc 002800
002801 cccatttaat taatggtcct gggatagctt tttagtgata tgcaaaagat cgaaattgga cctctttctt acaccatata 002880
002881 caaaggtgga ttaaagactt aaatgtaaaa cccaaaacta taaaaaaccc tggaagacaa cctgggcaat accattctgg 002960
002961 atacaggaac tggcaaagat ttcatgagga ggacaccaaa agcaattgca acaaaagtaa aaattgacaa atgggatata 003040
003041 attaaagagc ttctgcacag caaaagaaac tgtcaacaga gtaaacagaa atcctacata atgagagaaa gtatttgcaa 003120
003121 actatacatc tgacaaagac ctaatatcca gcatctataa gaaacttaaa cagatttaca agaaaaaaca aataaccttc 003200
003201 ttaaaaagtg ggcaaaagac atgaacagac acttttcaaa gtaagacata catgtgggca aaggacatga acagacactt 003280
003281 ttcaaagtaa gacatacatg tagccaaaaa accatataaa aagaaagctc aatatctgat cagtagagaa atgcaaatca 003360
003361 aaaccacaat gagataccat ctcaaacaag tcaaaatggc taccattcaa aagtcaaaaa ataacagatg ctggtgagat 003440
003441 tacagagaaa aaggaacact tatacactgt tggtgggagt atgaattagt tcagtcattg tagaaagcag tgtggtgatt 003520
003521 cctcaaagag ataaaaacag aactaccatt tgacccagaa atcccattac tggttatata accaaagcaa tataaattgt 003600
003601 tgcatcataa agacacatgc acacatatgt ttattgcagc actattcaca ataacaaaga catagaatcg acctaaatgt 003680
003681 ccatcaatgg tagactgcat aatgaaaatg tggtacgtat gcaccatgga atactacgta gccataagaa agaatgaaat 003760
003761 catgtccttt gcagcaacat ggatcgagct ggaggtcatt atccttaaca agctaatgca ggaacagaaa atcaaatacc 003840
003841 acatgttctc acttataagt gggagctaaa tgatgagaac tcatgaacac aaagagggga acaacagaca ctggggccta 003920
003921 tcagagggtg aaggttagga ggagggagag gatcagaaaa aataactatg gtatactagg tgacaaaatt atttgtacac 004000
004001 caaaccccca tgacatgcag tttacctatg taacaaacct gcacgtatac ctctgaatct aaaataaa
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Predicted Small Protein

Name NONHSAT128277_smProtein_2369:2632
Length 88
Molecular weight 10505.3514
Aromaticity 0.0919540229885
Instability index 48.6517241379
Isoelectric point 10.3903198242
Runs 11
Runs residual 0.0118226600985
Runs probability 0.0189414012943
Amino acid sequence MRITKHCSKKSEKTQTWKNIPCSWIRRINIIKTAILPKAIYRSNAIPIKLTMTFFTELEE
KLLKCLWNQNRARIAKQKEQSWRYHTT
Secondary structure LLEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHHHLLLLLLEEEELHHHHHHH
HHHHHHHHHHHHHHHHHHHHHHHLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooo
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