NONHSAT128294
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128294 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2150 nt |
Genomic location |
chr8+:110346610..110355813 |
Exon number |
4 |
Exons |
110346610..110348433,110351549..110351619,110352718..110352792,110355634..110355813 |
Genome context |
|
Sequence |
000001 GTCCGGGCAG CCGAAGAGTG TGGTAGGTAA CGGTCCTCAG CGCAAGGGTC ATTTCGTCGC TGGGAAGGGA CGGCCCTCGC 000080
000081 CCGCGGTGAT GGTGGTGAGC TATGCCCGTG GTCCTCAGGG CCGGGACCCG GGCCCAGCCC AGGCTCCTTT CGATGTACTG 000160 000161 TCTTTCGTTA GCGTCCCCGA CCCGCGCTCG CGGGCCTGTA GGGCTCTCCG ACAGGGCGTG CTACCGGAGT TGGCCTGAAA 000240 000241 CCAGTCCTCG CTTTGTTTTC TGGCTCCTCC TCTCCCGCCT CTCCCGCTGT CTCCGCCCTG TTCTATTTTC CCTAagaatg 000320 000321 tctgaactgg gagggatacc ctagcgccct tgttttacca gtgagaaaac tgaggccttt aagaattaag tgacttgtcc 000400 000401 aaggtcacTA TCCGTATTTT AGGAGCCAAG ACGAGATCAA GTTCAATATT CCAGGAGTGG TACTGACTAG ACCTTGTAGT 000480 000481 TATTTTGAAA ATGTTAGCCT CCAATTACAA AAGCAAGCAT TTCCTAGTTC TCACTCAACT TCTCCTTTTC CCTGTTCCTC 000560 000561 TCAAAAAAGA AAAAAAAAAT CAACTCTGGT AACTCATTGC CAGTCTGAAT TTTCAATAGG CCAGATGGAA GACAACAAAA 000640 000641 GTAATCTCAA GTTAGTGACA GATTAGGTGG GAAAACGTTA GTTTACGCCA AGTTTTATTT AATTTAAACT TTTAAGTGGC 000720 000721 TTTAACGCTT TCAAAACCTA ACTTTCCTCT TCTTTCAACA TCATTTTGGT TTGGGTTGTC TGTTTTTACT GACAATTGAG 000800 000801 GACTTTGTAA GTTAGGAATT AGTTTGAGAT TTGTTTTCTT CTTATCCCAC CAGCAGTGTG TGTGTAAACA CACACATCCA 000880 000881 CACACTTAGG TTTAGCAGTT GTAATTGTGG GTTCATCCTA GTGAAGAGTA AAGCAAAACA CTTAGAGCCT TATCTAGTAA 000960 000961 TTTTATTTTT TTTGATTAAT TAAttttttt tttttttttt gagacagagt cttgccctgt cacccaggct ggagtgcagc 001040 001041 agcgcaatgt cggctcactg caacctctgt ctcctgggtt caagcgattc tcctgcctca gcctcctgag tagctgggat 001120 001121 tacagacacc tgccaccaag cccagcttat ttttctattt ttagtagaga cggggtttca ccatcttggt caggctggtc 001200 001201 ttgaactcct gacctcgtga tccacctgcc tgggcctccc aaagtgctgg gattacaggt gtgacccact gtgcccggcc 001280 001281 TGGTAATTTT ATTTTTTTAC TAATAGTATT TAATCTTTTT TTGATGTTTA GTATGTATGA CTTCTCCCAA TTTTTGGATG 001360 001361 CAGTCTCTGC AGAAGTGATC GGCAGTTATG TTCAGTTTTG GAGCTCctag ggtcaaagta cttgagttca aattttgcct 001440 001441 ttccactttc tatctctgtg cctcagtttc ctcatcagta aaatacagat tattttatta atataaatat gtaacaatac 001520 001521 gttctgggaa ttaaatgtga tgtttaaaaa aaagcaaacc cacactgcat tagcccagtg ccaagcacat aagtgtttaa 001600 001601 taaagagtaa tgatattatt AACACACTTG AAATGTATCA CCCCTTCAGT TAATAGAATG GTAAACATGT TAGGATGCCT 001680 001681 GCCTAGAGGA TTTAGCAGAA AATGCTTTGT AAATGTTCTA TATCTGAAAG TACATGTTGA TGTCCAGGTT AGCAAGATGA 001760 001761 ACAAAGATGC GCAGATGAGA GCAGCGATTA ACCAAAAGTT GATAGAAACT GGAGAAAGAG AACGCCTCAA AGAGTTGCTG 001840 001841 AGAGCTAAAT TAATTGAATG TGGCTGGAAG GATCAGTTGA AGGCACACTG TAAAGAGGTA ATTAAAGAAA AAGGACTAGA 001920 001921 ACACGTTACT GTTGATGACT TGGTGGCTGA AATCACTCCA AAAGGCAGAG CCCTGGTACC TGACAGTGTA AAGAAGGAGC 002000 002001 TCCTACAAAG AATAAGAACA TTCCTTGCTC AGCATGCCAG CCTTTAAGAT TGAATTAGAT TGTGTTGTTG TGGTTTTATT 002080 002081 TCTGAAAGTA AAACTTGCCA TAAATTAGAA AACAATTTCC CAAAATAAAA TCCTTTTTTG TATGATGGTA |
Predicted Small Protein
Name | NONHSAT128294_smProtein_101:343 |
Length | 81 |
Molecular weight | 9021.6639 |
Aromaticity | 0.0875 |
Instability index | 72.79875 |
Isoelectric point | 11.5354614258 |
Runs | 14 |
Runs residual | 0.0361842105263 |
Runs probability | 0.0479344891109 |
Amino acid sequence | MPVVLRAGTRAQPRLLSMYCLSLASPTRARGPVGLSDRACYRSWPETSPRFVFWLLLSRL SRCLRPVLFSLRMSELGGIP |
Secondary structure | LLEEELLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLEELLLLLLLHHHHHHHHHHHH HHHLLHHHEEELHHHLLLLL |
PRMN | - |
PiMo | - |