NONHSAT128554
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128554 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8304 nt |
Genomic location |
chr8+:124480114..124488417 |
Exon number |
1 |
Exons |
124480114..124488417 |
Genome context |
|
Sequence |
000001 caagtagcta gggtcacagg cgccagccac cactccccgc taattttgta tttttagtag agacagggtt tgccatgttg 000080
000081 gtcaggctgg tctcgaactc ctgacctcaa gtgatccacc cgccttcacc tcccaaagtg ctggAGGTTC AGGATCTCTA 000160 000161 AATGAGAGGT AAACAAACTG AAGCAGGAGG CCAGATCAAG GAGATGCCCA CCATGATGTC AGGAGGTGAG TTGGGAAAGG 000240 000241 GCCTCAGGAG ATAGGGATTC TTGCGTGGCC CCCAAAGGGG GTAGTGGGGT AGGGAATAAG CTTCCTCCTA CCCTAAGCAC 000320 000321 CAATAAATTC AAAACTTTAT TTATGTAttt atctatttat ggtaaaaata taacataaaa ctcactatct taaagtgtac 000400 000401 agtagtgtta agtatatttg catcatcatg ccacagatct ccagaagttt tcatcttgca aatggaaact ctgtactcat 000480 000481 caaacaactc cccattttcc tctctccata tccccccact aactgccatt ctactttctg tttctatcag tttaactact 000560 000561 ttagatacct cgtatacgtg gaatcataaa gcatttatct gcattatttt acttagctta atgtcctcca gtttcattca 000640 000641 tgttatagtg tatgatagga ttttcttatt ttgaaggact gaataatatt ccattgtatg tatatatcac atttgcttta 000720 000721 tcattttttc catcactgaa catttaggtt ccatccacct cttggctatt gtgaataata ctgcaagcga catagatgtg 000800 000801 caaatatctc tgtgagatct tgttttcagt tcttttggat atatatcaag gaatgggatt gctggtcata tagttgctgg 000880 000881 taattctatt tttaattttt tgaggaacct ccattctgtt ttccatgggc tctaccattt tacattccac aaacagtgca 000960 000961 caagtgtttt aatttcttta tgtctttacc agcaagcact tgttatacag tctcccttct ttcttttcat agtgggcatc 001040 001041 ctaatgggag tgaggtgata tctccttgtg gttttcagtt gcatttttct gatgattagt aatgcgaaca tcttttcatg 001120 001121 tgcttgttgg ccatttgtat atcacttttg gagacatgtc tgttcaagta ctttgcccgt tttttaattg ggttatttga 001200 001201 tttttgttgt tgagttgagg gaattcttta tatattctag atattagtcc cttctcagat gtattatatg agcatatttt 001280 001281 cttcaattcc ataagttgcc ttttcactat attgattgta tcttttggtg cacaaaagtt tttaagtttg atataattcc 001360 001361 atttgtctac ttttgctttt tgttgcctat gcatttagtg tcataccaag aaatcattgG AAATATGTTT TTTCATTTGT 001440 001441 TTAAGCCTGT AGGAGGAAAT ACGGTTTGAG TGAACTTTAA CATCTTGGAA AAGTAAGCCT TGGTCAAGCT TACAGACAAG 001520 001521 AGACTAGGCT GGTTATTCAT CCTGTGAAAC AGCCCTACAA ATTTACCTAC ACCATGGAAT CCAAGATCCC ACTGATAATG 001600 001601 TGAACTTACT CCTTTTTGTT TGTCTTCTCC CTTCTAATGT TAATTTTTTT AACTGCAGGA AAAATAACAA AATAACAGAA 001680 001681 TTCTTCTTTT ATAAGATAGA TTTGGGAGCA TGTACTGATC TTTTGAGTGA GGTGGAGAGG TCAAAATAAA AATACTAAAA 001760 001761 TGTGAATAAA ACTTTGAGAC TTAGATGGAG ACCTAGTTAA ACCTTTTCTT CAAATGCCAT CAATGCCAAA GAGCAGCAGT 001840 001841 TGTTTTACTA attcattcac caaaagtgat tatcaaacgt ctactatgtt ctgggcacta actagccaag gcaatatagg 001920 001921 tgtgtataag aggcaagtct ctgctgtcTG TGAGTCTATG CAGAATCTCG TCTTCCGTTA GAAGCATCAA CAAACATGTA 002000 002001 TTGCCTGCCC TCCCTCTGCT AGAAGTTTGG GGAGACAtgt tatggactaa atgtttgtgt cccccaaaat gtacatgttg 002080 002081 aagccttaac gcccaatgtg atggtatttg gaagtgaggc ttttgggagg taattagata taaatgaggt catgaaggtg 002160 002161 tggtccccat gatgggatta gtggccttat aagaaaagag acaagagagg ttcttctctt tttctgccac atgaggacac 002240 002241 agtaagaagg cagctatcta caagccaaga agagggtcct cactaggaac tgaagcctgc tggaccttga ttttgaaatt 002320 002321 tccaggcttc agagctggga ttcctgtgtt taagccacca cccagtctat ggtattttgt atggcagccg aaacagacta 002400 002401 atacaAGGCA TAAGGGACAG TGAGATGCTG TTCATCCTCT CAAGGGTTCG TGAACTTGTT ACCGTGGCCT CCGCAGTCCC 002480 002481 TGTGTTCACT TATCTTTGCT AAGGGCAAAT CACTGATGAG ATGGACGCAT TTTATAACTG GAGAATAAAA GGGATGAGGC 002560 002561 CCTACAGGCT GAGGGTTACA ACCAGGTGTC TGAAGGAGTC AGTGTCCCAA AGAGTGAGAA TAGTGGAGTG TGTAAGTGGA 002640 002641 GAATAACCAG GTAGGTGCTT AAAAGTGAAC CTGTGTTGAC TGTATTCACT TATTTCATAA GACAACTTTT GGAGGCCAGA 002720 002721 CACACCACCT TTAAAAAGTA ATtgtataag tgtcctagtg ctgtgcatga agtcccataa actgggtgct ttttaaacac 002800 002801 ccagttgttt ttacaataga agtttatttt cccacagttc tggaggctgg aagtccaaaa tcaaggtgtc atcaagccta 002880 002881 tgcttcattt gaaaactaga ggggagaatc ctttcttgcc tcttttagct tctggtgttt ggtggtaatc cttggtgttt 002960 002961 cttggcttgt agatgcttca ctcccatccc tgcctccaaa gtcatatcgt catcctctcc ctgtgtgttt ctccttcctt 003040 003041 ttttcttttt tttttttctt tttttgagac aggatagcac gctgttgctc aggctggagt gcagtggcat gatcatagct 003120 003121 cactgcaacc ttgacttcct gggctcaggt gatcctcctg cctcagcctc ccaagtagct gggactacag gcatgcacca 003200 003201 ccatgcctgg caaattaaaa aaagattttt tttttttggt agagacgggg tcttgttatg ttgcccaggc tggtctcgaa 003280 003281 ctgctgggct caatcagtcc tcctgccttg gcctcccaaa gtgctgagat tactggtgtg agccaccatg ccttgcctct 003360 003361 gcttcctctt ataaggacat cagtcatacc aggttaaagg ctcactctac tccactgtga cctcatctca aataaactaa 003440 003441 ttacatctgc aacaacatga tttccaagta aggtcacatt ctgtggtact gggtattagg actttgttgt agtcagggtt 003520 003521 ctccagagaa acagagccaa taggatggtt ccgtctctat agatagaaat aaatttatta taaggagttg gctcacatga 003600 003601 ttatggaggc tggaaagtcc caagatctgc atagtgaatc aacaagctgg agacccagtg gtttagttcc aggctatgtc 003680 003681 caaagacctg agatccagga gagctaatgg tatagtttca gtctgaagtc cagcaggctt gagacccagg gagagctgat 003760 003761 gtttcagttc aagtacaaag acaggaaaaa attaatgtcc cagctcaaag gcagtcaagg agaaactctc tcttactcaa 003840 003841 gggagaatga gctttttatt ctatttagac cttcaatgat tggatgaggg ccacccacat tagggagggt aatctggttt 003920 003921 actctgtcta ccaatataag tgttactctc atccaaaaac actctcacac aaacccccag gataatgttt gattaaatat 004000 004001 ctgggcaccc catgacccag ttaagttgac acgtaaaatt aaccatcaca ctttaaaata tctttttggg aagcacaatt 004080 004081 caacccataa AAGTAATAAT CATGCCTAGA GAACTTTTTT AGTTGAAGAG ATAGAAAGTT TAATTCAAAT CTGTACCTGT 004160 004161 TGCTTTGTAC TGTTATTTGA TAGGGGTCTT ACCCCACTCC TATCCATCAA GGCTGGCAGA GGCTATTTTC CAGGATTTTA 004240 004241 GGGTTGCTGG CAGCTGGGCA GTGACTCAGG AGAGTTGTGA GTGGGGACAG AAAGGAAGGA AGTATGCCAA ACAGTGCTAA 004320 004321 AAAATATCCA AAGCTAAGAA ATGTGTAATT AGCCCTGACC TCCTTTGCCC TTCCTCCTTA CTAAAGCAGA GTGGGTGAAA 004400 004401 TGGCTCATGG GTTATTAATT GCCCTCTGCT GGTCACTTTA CAGGCATGGC TTCCCATTTG CTTACTTTAt tttctaggga 004480 004481 tgtcagcaaa ttaccacaaa cttgatgact taaagcaaca gtaatatatt gtctcatagt tctggaagtt agaagtctaa 004560 004561 aatcaaggtg tcacagggtc catgctccat ctgaagttgt ccagggactg aagtgtccaa tccttccttg cctatcccta 004640 004641 gtttctggtg gttcctggca atcctggtgt tccttggctt gcagctggct ccccacaata tctgcctcca ttttacatgg 004720 004721 ccttccctct gtttctctgt gtgccctctc ttataaaaac agcagtcatt ggatttaagg tccaccataa tccagcatga 004800 004801 ctttatttta agttaattac atttgcagaa accctgtttc caaacatgtc acattctaaa gttctggata gacatgcatt 004880 004881 ttgagggaga tgctattcaa cccCCTATAC TAAAACTCTT TTTCTGTGGA AGAGAAAGAG GCAGGGAGAG TAACTTGTCC 004960 004961 AGATCACTGT TAAGTGGTTG AGCTGAGCTT TCATGTGTAC TCATTAGCCA AAGTGTCTTC CTTCTTCCCC TCTGCCCTCT 005040 005041 TCCCTCTTTC CTTTCATCGC CTATTTTCTT ATCCAAGGAT GCCCTGGATA TTAGTTTACC TTCATTTGAA TGGAGAAAAA 005120 005121 TGCCCATTGT TAACTGTTAA CTGTTGGGGT GAGGGGATGG GAAGGTGTTC AGTggaaggt ctctcaatct ccttgagagt 005200 005201 tagtttactt tttttgcaaa aatggagaaa atgaaacttg tctcatttgg tggttgcatg tattaTTAAA TCACATACAA 005280 005281 CCGATCACAA AATCAATGTG TAAGAAAGTG TCTGGGAAAA TCTTCCAAGG CATACAGCCC TGAGGGACTT TTGTAGAAAA 005360 005361 TCATTTAGAA AGTAAGGCAT CCATTACTCA CCTAGGGTAT TAATTAATTT GTATTCTTGA AAttcttttt tttttttttt 005440 005441 gagatggagt cttgctctgt tgcttaggct ggagtgcagt ggcgcgatct tggctcactg caacttccgt gccctgggct 005520 005521 caaccaattc tcctgcctca gcctcccaag taactgggac tacaggcaca tgccaccaca cctggctaat ttttgtattt 005600 005601 ttagtagaga cggtttcacc atgttgccta ggctggtctc gaactcctga cctcaactga tctggccttg gcttcccaac 005680 005681 gtgctgggat tataggcatg agccaccatg cccggccTGT ATTTTTGAAT TTCTACATTG TTGACATGCC TTGAAGTCTT 005760 005761 AGACGATGAG CAAGAAACAG AAATCATGTA GCACATATAT TCAACATTCC CACGTAATTT TAGGTTTCTA TTTGGTCTCT 005840 005841 TTCAAGCGGT AAGTAATTTA CTTTGATCTT CTCTGCTAGG TTATAACAAA AGTTGACATT GTAGCTCTGC CACTCACTAG 005920 005921 AAATATCATC TTGTTTATGT TATTTAACTT TATGACCTCT AATTGTGAAG GTTAAAGGAA AGAGCACATA TAAAAGCTCC 006000 006001 TGGTACATTA TGGTTAGTCA GGAAGTAAAA GTTTTTTTTT TAAATTGCat tgttattatt attactgtta ttattaatat 006080 006081 cattGGTATG CAAGACACTG AGTTATACAT ATTTGACTTG TGAACATATT TGTTATTTTA AAAAttgaaa taatttgtct 006160 006161 taaaaaagtt acaaaaatag tacagacaat tcccatatat ttcgtcaccc agcttcccct actgtttaac atcttacata 006240 006241 agcacagtat gatgatcaac actgggaaat taacattgct acaatactat taagtaaact atagatttga cttgaatttg 006320 006321 caggttttcc cattaacggt tttttctgat ccaggatcca aaccttgatc tccaattgaa cttagttatg agaaggagac 006400 006401 aaacttagtc ttttataact tagtttttcc ttgtctttca tgattttgac acttctgagg aaagctggtc agtaaccttg 006480 006481 tagaatgccc tccaatttgg ctttgtctgt attttctctg attaaattga gataatacaa ttttggcaag aatacctcag 006560 006561 aagtaatgtt gtgtcctttc tcatacacca tatccagaag tacacaatgc tagtatatat tattactggt gaaattaaca 006640 006641 ttgatctctg ggttaaagtg gtgtcttcca ggtttctcca ctaaattacc atttttccct cagtgactaa cagatatctt 006720 006721 ggggaaatac tttaaaacta cgcaaatatt gccaggcgtg gtggcgtatg cctgtaatcc tagcactgtg ggaggccaag 006800 006801 gtgggcggat cacttgaggt caggagttcg agaccagcct ggccaacatg gtgaaacctt gtctctacca aaaagtggtg 006880 006881 gtgtgcgcct ataatcccag ctacttggga ggctgaggca ggagaatagc ttgaacccag gaggaggagg ttgcagtgag 006960 006961 ccgagatcct gccattgcac tctagcctgg gggataagag caaaactctg tctcaaaaca aaaacaaaaa caaaactatg 007040 007041 caaatatcct gtttcttgta ccttcaccca ctagttttag catctatgga tgattcttgc ctgccacaat tattactatg 007120 007121 gcatttgcct attagtgatt ttctgtttcc ttcatttctt ctctattaat aggaattctt ctctaagaga gagttattct 007200 007201 cctccctcat ttattttttt atatcaatat gggctgatga atatttattt tattttatgg gttataatcg aacactgtca 007280 007281 ttatttattt tgttgctcca gtggttccag ctctgggcat taggagctta aacaggttgg ctcctgtatc ctttcaacat 007360 007361 gcctcattat ttttagtgct ttcttgcttt ttgatgctta ctttttaatc taggctcatc ttgtactttc tttgccccaa 007440 007441 ccatggaatt gatcttttct ccaaagaact ctgattcctt ttattggaaa atggacttag gaaccaagat cttggcattg 007520 007521 agtagtctca ttgctactgg ggtttcattg cttctgcgtc ctctcagtgg acagagtttg gaaatatatg caggtatgct 007600 007601 aacacacata catatgttta tatttgtaaa ttataaaatt gtataatttt aaatttctgt attataaaat tatacatatg 007680 007681 ttATAAATCT ATGTTTATTT CAACATATAT CTGTATAACT ATTAAGGACC ACAATGAATA CATTCAAAGG TAAATGTGTG 007760 007761 AATATCTCTA AGGCATACTT CTACTTATCT CCTAATAATA AAGAGAGTAG GTCCATTACA CTATTGCAGA GTCATTAGTA 007840 007841 Cttgtttact ttcaagtttt atgttgtaat tcagatagct gaggttgtca gagaagagac ctAGCCTTAT GTAATTCTGG 007920 007921 AACCAGAAAA AGAAATCATG GAACTATCCA ATTCATgttt cctaaactgg tgttccatgg aatactattt taggagttgt 008000 008001 taatagcatt atcctgatca aagggttttg cggttccata agtttgggaa acagcattgt agatcctccA CACTTGTGTG 008080 008081 ACACTGCCAA TGGATTATTT TATTTATATG tttatttatt tttagggatg gggtcttgcc aggttgccca ggctggcctc 008160 008161 aaactcctgg gcccaagcag tcctcccact tcagtctcct gagttgcgag attacaggtg tgagacacca tgcccagcAT 008240 008241 GCCTATGGAT TATTAAAGGA GTTTTTAAAA ATTTGTTTTC CAggctgggt gcagtggctc acag |
Predicted Small Protein
Name | NONHSAT128554_smProtein_461:673 |
Length | 71 |
Molecular weight | 7925.1959 |
Aromaticity | 0.128571428571 |
Instability index | 51.7057142857 |
Isoelectric point | 6.21148681641 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0395591670102 |
Amino acid sequence | METLYSSNNSPFSSLHIPPLTAILLSVSISLTTLDTSYTWNHKAFICIILLSLMSSSFIH VIVYDRIFLF |
Secondary structure | LEEEEELLLLLLLLLLLLLLEEEEEEEEEEEEELLLLLLHHHHHHHHHHHHHHHLLLEEE EEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHH HHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooTTTTTTTTTTTTTTTTTT TTTiiiiiii |