NONHSAT128556
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3475 nt |
Genomic location |
chr8-:124510130..124513604 |
Exon number |
1 |
Exons |
124510130..124513604 |
Genome context |
|
Sequence |
000001 TGCAATCCCT CTCCCCCTGA ACCAATTTCA CATTGGGAAT GCAGGACCTA GACTGCTGAA TAAAAAGCTA CTTCTTCTAT 000080
000081 AATTGTCAGG TTCTCTCCAA TTTCTCAGCT TCCTCAAAGA CATGGGGTGG AGTTGGGTGT GCCATCACTG AGAGAGCTCT 000160 000161 GGAACTTTTG ACTCTTAGTG ACATTTTTAG ATTTAGGGGT TCATGGCCTT CCACATGTTG CCACCAACTG GTGATCTCTG 000240 000241 CCCCTTCATG CTGATCAAGA AAGTAGAAAC TCCTCGTCGC CTTCAGGTTT GCAGTCGCAG AAACATTGCC TGCTGTGGAC 000320 000321 TGTCAGCACA AAACTGGGAC ACTGGTGTCA TTTAGACTGT CAGCAGTGCA CATGATTGTA CGATAGACTC CAGGCAACCA 000400 000401 TGTGCATCTG TGCAAGATGA CCTCTGCCCC AAGAGAAGGG TTACGGTCTA ATTAAATGTT TACCAAGATG GTACCAGTGG 000480 000481 GCTCTCCCCG TGTCCTTTGG TGTTATTGGA GCTGGTGTAT GACAGACTCA AGGAAATTTT TTAAGGAAAA TGAAGAAGAA 000560 000561 ATCAACCTTT ATGGTTCTCT TTCATTGGAA GAGGAGAATA AGGAAAGAAA TGGCAGGTAG AGAGGGAGGG GGAAAGGAAT 000640 000641 AGAAATGGCA TGTCTTTGAT GCTGTGGCTT GTGTGGGGAC AATGGGAAGA GCACAGCAGG CACAACATAT CTGTGTTAGT 000720 000721 GCCACGTGGT ATCTGTTAAG TATGGCCAGA GCCTCACATA TAAGTGAAGA GAGTTAAGAC AATTCTTGCT CTTTGAACAA 000800 000801 TAATAGTCTA TAGAATTTCT ATTGGCAAAC CATCCCAGAC AACCTGACCT ATCAAACAAA AGCAAATAAT CCCTGTCTCA 000880 000881 GAACTGCTGG TCTAAAAGCT AGAAGGGGCA TGATAATGGA AATTGCTAGA AAAGAGAGAA TGCTCTACTC TCTTTCCTGT 000960 000961 GCCTACCTAC CCCCATCCTA AACCCTGTAA AACAGAATTT CAAAATAGAT GTCAAATATG AAGTAATTCA GACTTCCAAA 001040 001041 GAAGGAAAGA GTTCTGCCCA GGGCAGTATG AGCAAATCCA CAGGGATGTT AAGATTTGGT CCAACTCAAA GGTTTATGGG 001120 001121 CAGTGAGCCT AGAGTCTCTT GAGAGTAAAC CCTTGCATTT GGGACAAGGA GAATATGTGA AGTTCAGGAG TGCTCACACT 001200 001201 AGAGCAAGAT CCAGAAAAAA AAAAATCCAA TGGCATTTTA AACTAGATTG CATTATCACT CAATGCTGTT ACTTTGAGCA 001280 001281 GACAAATCAG TTGAATGGGA GGGCAAATGG CAGAAATGAA CAAAAGCTAT TAGGTGAAAG CATCCCCAAT GTATCAGTTG 001360 001361 TGAGATGATT TTTGTTTAAT GATGATCAGG TTTACATTGA AGTGGCTTGG AAGACGTATT TCAGAGGGAC TGGGTTTGTA 001440 001441 CTGCAAAACT CTGAACACTA GAGCAGGTTC TACTAGCACT TGGGCAGTAA GGTAGCGGGT GTGTATTATG CTATTGCCAT 001520 001521 AGTTCTCGTC TTTGTGGATT CACATACCCT TTCCCATGAG GAGCTTGCTA CTAACAGCCT CCTGTTTCTG TTGTTTTTAT 001600 001601 ATGGGAGAAG AGAAAGAGCT TGGAATTTCA ATTGTCTAAA CAATTGGTAT GATTTACAAG AAGGCAAACC ATTCAGGAGA 001680 001681 TGTTCAACAG TGTATCATTC TTAGCATTCA ATACAATGTT TATTATAAAA TATACACCTG AGTTTATGTT TTTCTGCCAG 001760 001761 GCTGAAGGGC AATAATGTCT TGCTATGCAA ACACTCTATT TTATGTGTGA ATTTTTTTAA CTGTAATTTT ATGTGTGAAT 001840 001841 TTTTTTAACT AAACTCTATC ATCATTTTCT ATGTTGACAT CTTTTTTTTT TTTTTAATCT GTTTCCAACT CTGAGTCTGT 001920 001921 GAACTATCTC TTCTGACTGG ATGCTGGCCT AAAATCCTAT TAGTGCTTAA ACAGACCTCA AAACACTCTG AACCTGTAGG 002000 002001 CCAATACAGA GATGTTGTTC TTTGATATAT CTTGGGTCCT TGATGGCTTC AACAAACAAG GTCATAATTT GTTTAAATTC 002080 002081 AGTGTTTTCT GTAGATACCT TCTTCTCAGT TTCATTAAGA AGAGTAACCA TCTTTGGTTT TCCAAAGAAT GGAAACTCCT 002160 002161 ACCCTAGACT TTAGACTTAG AGCGTCTGCC TTTCACGATG AGTAAGAGAT CCAGAATGTT TAGGGGATGT GCGTCAGCCC 002240 002241 ACCTGGTACA GTGGCAAAGC TGAATGCGAA CTTGAGGCCT CCTGAGGCCT GACCTTCTAT GCCCCCAGCC CTCCACCCCA 002320 002321 AGCACCTTTT GGTGTGGCTG GAAACACATG ACATTGGATG TGATTTTTCT CAAGCCCTTC ACTGTGGAAG GCATGGGAGA 002400 002401 CTGCCCAGCA TTGGGCATGT GGCTGTTAAC GTTTCCATTT CAAGTCCCTG ATTCTTACTG GAGAAGTTAA GGAGCCACTT 002480 002481 AATGTTTTCA CAGACCTCTG ATTCTGTTGT GAATGTGGCA TTCCAGTGAG TACAACCTGC TTGCTATAAA GAAAGCAGCA 002560 002561 TATTTTGACA ATTTTATTTC TTCCTTGGGT ACTTACATTT TTATTACAAA AATGGCCGTT ATAAAAAAAG ACAGAAGGGC 002640 002641 TGGGCAGTGG CTTGCTCCCT AGAAACTGAG ATTCCGAAGC AGGTGTTTCC TCTCCCCTAG ACTCAGAGGT ACATTTAATC 002720 002721 CATCTTCTCC ATTTCCTCCT TCAGGACCAG CTATGAGATT CAGTGCATTT CTAGCCCAGC GGATGTTCAT TCTCCACTAA 002800 002801 ACTTCATCTT TTACTAAGCA AAGGGGGATT ATTCCATGAG GCAGCCAGGA GCAAGGGGCC ATGATATTCA TGACTTTGTC 002880 002881 TGCTGGGCAT TTTTCAAAGT GTCCTTGAAT TCACTCAGCA AACAAAGCTT TCTGGAGAAT CTCTCAAAAC TTAGGCCCTG 002960 002961 CTCCATTTGG CCAAAAATGA TGGCTGCTCC AAAACTCTGA ACTTCTTAAA ACTCCATCTG CTACATTATT TCTGGAGTTT 003040 003041 AAACATGACT TTTTCTGTCT TTGAGTATAG ATGTGTTTGT TTAATTAACG AAGCACAAGT CTGTTAAGCA GAAGGCTCCA 003120 003121 AGCTGTATTC TATACTTGGG AATCCTTGGT GCCATCTTTA TTCTACCAAG TGCCAATCAC CATGGCTAAA GTGGGCGTAT 003200 003201 ATTACAGCCT GTGTCCTAAG CTTAGAAGCT TTAATGTACT TTTTTAAATG AAAAGTATTA GAGGGGGTTG AACATTGTAA 003280 003281 CTAAAGCATA AAGTTAGACC AATTACATGC AGAGATGTTT ATTTAATATT GTGTGAGCTG AGTCCTTCTG TATAAATTAT 003360 003361 TTGCACACTT TTCTTGCATG ATGAACTGAT TTTTTATAGT TGTTTGTACC AGACGGTGGC ATATTTTTGT AAAAAACTTT 003440 003441 TGACACTGAA TTGCAATAAA TGTTTTTCCA ACAAC |
Predicted Small Protein
Name | NONHSAT128556_smProtein_455:619 |
Length | 55 |
Molecular weight | 6552.388 |
Aromaticity | 0.148148148148 |
Instability index | 70.5018518519 |
Isoelectric point | 5.31890869141 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.03939233351 |
Amino acid sequence | MFTKMVPVGSPRVLWCYWSWCMTDSRKFFKENEEEINLYGSLSLEEENKERNGR |
Secondary structure | LEEEEEELLLLLEEEEEEEEEELLLHHHHHHLHHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |