NONHSAT129048
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129048 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1900 nt |
Genomic location |
chr8+:128806779..129113498 |
Exon number |
9 |
Exons |
128806779..128806980,128867401..128867565,128902835..128903244,128951754..128951922,128996150..128996450,129001408..129001537,129082406..129082518,129108764..129108900,129113226..129113498 |
Genome context |
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Sequence |
000001 CTCCGGGCAG AGCGCGTGTG GCGGCCGAGC ACATGGGCCC GCGGGCCGGG CGGGCTCGGG GCGGCCGGGA CGAGGAGGGG 000080
000081 CGACGACGAG CTGCGAGCAA AGATGTGCCC CGGGACCCCC GGCACCTTCC AGTGGATTTC CTTGCGGAAA GGATGTTGGC 000160 000161 GGTCCCTGTG ACCTGTGGAG ACACGGCCAG ATCTGCCCTC CAGACCATAG CTGTCTGCAG TGCAGGAAGC CAACTATTAA 000240 000241 GGGGAAACAA AAGTGTTCTT AGGAGTCCTG CTGTCACTGT GGATTGAGCC GGTGAAGCCC TGAGGGATTT CATCGCTGAG 000320 000321 GTGGATGGAG AAGCAGCTGG GGGCCTTGGC TGTAAGGACC CCTAAGGGCC TGATCTTTTG GCCAGAAGGA GATTAAAAAG 000400 000401 ATGCCCCTCA AGATGGCTGT GCCTGTCAGC TGCATGGAGC TTCGTTCAAG TATTTTCTGA GCCTGATGGA TTTACAGTGA 000480 000481 TCTTCAGTGG TCTGGGGAAT AACGCTGGTG GAACCATGCA CTGGAATGAC ACACGCCCGG CACATTTCAG GATACTAAAA 000560 000561 GTGGTTTTAA GGGAGGCTGT GGCTGAATGC CTCATGGATT CTTACAGCTT GGATGTCCAT GGGGGACGAA GGACTGCAGC 000640 000641 TGGCTGAGAG GGTTGAGATC TCTGTTTACT TAGATCTCTG CCAACTTCCT TTGGGTCTCC CTATGGAATG TAAGACCCCG 000720 000721 ACTCTTCCTG GTGAAGCATC TGATGCACGT TCCATCCGGC GCTCAGCTGG GCTTGAGCTG ACCATACTCC CTGGAGCCTT 000800 000801 CTCCCGAGGT GCGCGGGTGA CCTTGGCACA TACAGCCATC ATGATGGTAC TTTAAGTGGA GGCTGAATCA TCTCCCCTTT 000880 000881 GAGCTGCTTG GCACGTGGCT CCCTTGGTGT TCCCCTTTTA CTGCCAGGAC ACTGAGATTT GGAGAGAGTC TCACTCTGTG 000960 000961 GTCCAGGCTG AAGTACAGTG GCATGATCCC AGGTCACTGC AACCCCCACC TCCCGGGTTC AAGTGATCCT CCTGCCTCAG 001040 001041 CCTCCCGAGT AGCTGGTATT ACAGGCGTGT GCCACAAAGC CTGGCTAAGT TTTGTATTTT TAGTAGAGAC GGGGTTTCAC 001120 001121 CATGTTGGCC AGGTTGGTCT CGAACTCCTG ACCTCAAGTG ATCCACTCAC TTTGGCCTTT CAACGTGCTG GGATTACAGG 001200 001201 CGAGAGTCAC CGCACCCGGA CGACTCTGAC ATTTTTGAAG AGTCCAGAAT CCTGTTACAC CTGGGATTTA GGCACTTTCA 001280 001281 ATCTGAAAAA ATACATATCC TTTCAGCACT CTGGACGGAC TTGAGAACTG TCCTTACGTG ACCTAAAGCT GGAGTATTTT 001360 001361 GAGATTGGAG AATTAAGAGC CAGTCTTGGT GCTCTGTGTT CACCTGGTTC ATCTGAGGAG CTGCATCTAC CCTGCCCATG 001440 001441 CCATAGATCC TGCCCTGTTT GCTTCTCCTG TTGCTGCTAG TGGACATGAG AAGGACAGAA TAACGGGCTC CCAGATTCAC 001520 001521 AAGCCCCACC AAGAGGATCA CCCCAGGAAC GCTTGGAGGC TGAGGAGTTC ACTGAGGCTA CTGCATCTTG AGACTCAGGA 001600 001601 TGAAGACCCA GCTTGGGGCT GTCAAAGGTT TTTTGCATGT CTGACACCCA TGACTCCACC TGGACCTTAT GGCTCCACCC 001680 001681 AGAAGCAATT CAGCCCAACA GGAGGACAGC TTCAACCCAT TACGATTTCA TCTCTGCCCC AACCACTCAG CAGCAAGCAC 001760 001761 CTGTTACCTG TCCACCCCCA CCCCTTCCCC CAAACTGCCT TTGAAAAATC CCTAACCTAT GAGCTTTGAA TAAGATGAGT 001840 001841 ACGAACTTCA TCGCCCACGT GGCGTGGCCG GCCTCGTGTC TATTAAATTC TTTTTCTACT |
Predicted Small Protein
Name | NONHSAT129048_smProtein_32:286 |
Length | 85 |
Molecular weight | 8952.139 |
Aromaticity | 0.0119047619048 |
Instability index | 60.1785714286 |
Isoelectric point | 11.0068969727 |
Runs | 14 |
Runs residual | 0.0326812253564 |
Runs probability | 0.0495243142302 |
Amino acid sequence | MGPRAGRARGGRDEEGRRRAASKDVPRDPRHLPVDFLAERMLAVPVTCGDTARSALQTIA VCSAGSQLLRGNKSVLRSPAVTVD |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHH EEELLLEEELLLLEEEELLLEEEL |
PRMN | - |
PiMo | - |