NONHSAT129096
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129096 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2088 nt |
Genomic location |
chr8-:129417515..129440162 |
Exon number |
6 |
Exons |
129417515..129418879,129419022..129419092,129426460..129426654,129433989..129434060,129435747..129435839,129439904..129440162 |
Genome context |
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Sequence |
000001 CCCACGCGTC CGCAGAGGGG TTCATACACA TGCAAAGATA ACTTCCCCAC TTGTCTCTGA TGGAAACTCA AGGGCCATGT 000080
000081 GGAAATGGCG TGGATTTGGG ACTCAGCTGA TGAACTTGGA AGCCCAGCCC AGCCAGTCAG CAGTTTGGTC CAGAACCTGT 000160 000161 CTGCACCTCA GTGTCTAGTA AATGGAGGAA GGGAGAAGGA GATGAAACTA ATTGACATTG GGCCTCTTTT ATGAACCAGG 000240 000241 CACTTTGCTA TTCTCATCCA GTCTTACCTT GACGGCAGGA ATGCAAAATG GCAAGAGGCT CCATCCTTGA ATCACCATTT 000320 000321 GGAGAAGAGT TAACTGACAA ACAAGATCTG CACTGAATTA TATGCCACAG GGAGCCAGGA TAGGAGGACA ACATGGTGGA 000400 000401 TCCAGCATGG AACTTACAAC TGAGGCTAGT TTGATGGACA TGGCACCAAA TCTCATGAGA GTGACAATAA GCTAGAACAG 000480 000481 AAGTTTTGGA AAGCCAAAGA AAAGACTGTA ACTGCACACA ATAAGCAGAA AACATTTGTG CTTTCTGTCT CCATCTATCA 000560 000561 CCCAAACAGT CAAACCTGGA GAAAACTACT TTTCCTCTCT ACACCAACAT GCATGCTATT TGCATAACAC ATAACACAAG 000640 000641 GAAGTGAAGC AATTTGCTCA AGATAATGTG TCTAGTCATC AAAAGGACTG GTCAGTGCCT CGATCTTGAT GATGATGGAT 000720 000721 ACTGCTTATT GGATACTCTC ACATCTCAAC AATCCAAACA CCTTCCACAA TGACCTGCTT AATCTGACCC CTGGCACATC 000800 000801 TCAAATCACA GTCTCTGTCT GTAGTAGATA AAAAAAAATG GACACACACT TTGCAATACC ACCCATCAAG AGATTAAGTA 000880 000881 ACTTTCTTCA TCCCTTGAAT CTAGTGGGCT CTTGTGACTA CCAATAGAAT TTGGTGGAAG TGACACTCTG CCTTCTGCAA 000960 000961 CAAGGCACCT GTGCTGAAGG AGACTTTTAG CCTCTGCCCT TGCCTCCCTG AATAGTGCCT CCATGTGAAG AAGACCAAGC 001040 001041 TAACCTACTA GAGACATGGC TCCACCAAGA ACCAGTAGCA GCTGCCTGGA CAAGGCCATC TTAGACCACC CAACCCTAGT 001120 001121 CAAGACAGCA GAATGACTGC AGCTCGGTGA ATTGTGTTTT AAGCTGCTAA GTTTTCAGTG GTTTATTAGG CAGCAATACA 001200 001201 TAACTGAAAT ACCCTTTCAC CCTCCCGACT TTAGGCTCCA GCCTTTCTGA TCTTCTCTTA AGCCTTGGAA CATGCCATTG 001280 001281 ACTTTTCCAC CCTGAGACTT TGCATGTTAT TCCTTATGCA TAAAATACAT TCCTCTTTCC ACCTGTCAAA TGGTTTAACT 001360 001361 CCCTTTTATC ATTTAGGCCA CTAGCTTAAA ATTCACATGC AGAGAGAATT CTTTACTGAG CAACCATATA CCCCAGATTT 001440 001441 CTTATTCTTC ATATCAGGCT TTTCTTATTT TTTCATTGCG CATATCACAA AGGGCAATTA ATTAATTAAT TTGTTGTTTG 001520 001521 TTTGTTATTG CCTATTTTCC CCCTATCCAG ATGTAAGCTC CATGAGAGTG GTTGGAGGCA ATGTTTATTC TGTTTTCCAC 001600 001601 TTCACCTTAA GAGAGTGCCG GGAAGAGGGT CTCATCCATA TTTCTTTGGA TCCTTTTATC ATTTTCCTGC ATACTTTCAC 001680 001681 TGAGAGTGCT CTCATGTCCA TCAGCCAGCA CTTGCTTCTC TTTTCTGAGG GCTGCCCCAG GCTCCTGAAG TCCAGCTTGG 001760 001761 ATTGCCTGCA TGAAAACATA GAGAGCTAAA GGCTGGGAAC TTGCATAGCC TTAGCCATTT GCCAAGGAAC GGGGTGATAA 001840 001841 CTGTAAACAC TCTAGCTCCC TTGTTCCCTG ATCAGGAAAA CACTAATGTG TGATCTCCCT GTCTGCAGTG CTCACCTGCA 001920 001921 GGACTTTCCT TGCTGGTTTT CTTCACGGTG TTTGTAATAA GTGCATTGTA CCCTTGATTG CCTTTCTTCC TTGCCCTGTC 002000 002001 CTACTTCTCC AGTTCTCTGG AGGTTTTTCC AGGAATGCTT CTTAATAAAC ACCACTTTCA CACAAAAAAA AAAAAAAAAA 002080 002081 AAAAAAAA |
Predicted Small Protein
Name | NONHSAT129096_smProtein_665:772 |
Length | 36 |
Molecular weight | 3952.5125 |
Aromaticity | 0.0285714285714 |
Instability index | 56.3771428571 |
Isoelectric point | 4.66339111328 |
Runs | 8 |
Runs residual | 0.0474576271186 |
Runs probability | 0.0310678325385 |
Amino acid sequence | MCLVIKRTGQCLDLDDDGYCLLDTLTSQQSKHLPQ |
Secondary structure | LEEEEELLLEEELLLLLLEEEHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |