NONHSAT129287

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT129287

Source

NONCODE4.0

Same with

,

Classification

sense

Length

5466 nt

Genomic location

chr8+:136550777..136562225

Exon number

2

Exons

136550777..136555013,136560997..136562225

Genome context

Sequence
000001 cagggctgct caggtaaaat tcaacattgt caccgtgctt aacactttat ctgatatttt attcttcata atgaccctga 000080
000081 aatgtaatga cttttataag ccacacctgg taaatgtgaa actgaaaact agaaatgctg agaaacctct gtgttcacat 000160
000161 tgctgataag ATGAGGGCAC TGTATGATGA CACCCCTTCA GAACCCATAG CAAGTGGGAC ATCAGGAGGT GTTATGGGAC 000240
000241 TAATGGCAAA GAAGACAACT ATGCCGCTTT CGTTGTTTAT TATTTATATC ATCCAGAAAG TCCAAAATAC ATACTCAGTC 000320
000321 CATCTATTAG TTAGGCCTTT TCTTGTTGCG AATACCGACT ATGACTAGCT TGAAGGATTT TTTCTTTAAA AAAAGGAAAA 000400
000401 CAACAAAAAA CAACAACAAA AAAAACCTAC CTTAGGGTGT CCTATAGAAT GCATGGAGGA ATTGAACTTG CAAACTGAAA 000480
000481 AGACAGTAAT AAGAGCTTTA AGCCTAAGAA ATTGTCTCTG GCTTTTCCCT CTAGcagtat tttttacctg ggccacaatt 000560
000561 gacattttaa acaggacact ttggtgaagg gcaggaccat ctgtttctga tgcctgacat aggcctttgc ccctgagtcc 000640
000641 cagtagtgac cctagtcatt gtgacaacca aataaacatg ctaaatattt ccaagtgtcc cacagggagg tgatgcaaca 000720
000721 tctgcagttt gagaaccTGC CGGAGCAGCC AAGCACATTA CCATTATTGT GACTCAGCTC TCAGGACATT CAGTATCCAC 000800
000801 ATAATCAGTT CTAAATTTCA GAATCTCTTG ATTTCCAGTC AAAGGCCAAT TCCTCGGCCG ATCTGGGTGG CCTGGGCCAG 000880
000881 GTCATGCCAT TTTCAGTGTG GTGGCTCCCT TGGTAGCCTT CTCCCACTTG CCATAGGTTC TGAAGGGGAT GCAGTTCCAC 000960
000961 AGTAGGTGGG TCTTGTTCAG ATAAAATTGT ATATATCCAC AACAGTTAAA TTCATCTATT TATTACTTAC TAATTTGGCA 001040
001041 TCAAGTATAC GCAATCtgct ggctgctctc ttaggtgatt ttcgtatact ttcttactta attcatgcga cctgcaccca 001120
001121 cagtaggtaa tatggtctgt gttttgtgga tgaaaagtct gagactcagg agggttaatt tgactCAGGA GATAGAAGTA 001200
001201 ACTTGACTAG GGAGATACAT GGTTGAACAG AGTTGAGAGG AAAAAGAAGG GAAAATAAAA GTGTTTCTGG TTGTCACAGT 001280
001281 ATTCATTTAT GTACTTTTTG TGAACAAAAC ACTAACAGAA GTTAAGTGGA AAAAAGAAAC CCCTAAAGGT ATATAAAAGT 001360
001361 CAATAAAATG CTTTTTCTTT TTACCTGGAA Tgctgtcaag tgacctttaa tcaatcatgt ctttctatgg acttcagatt 001440
001441 cttctgtata aaattagatg tttggattgg atgatttcta aagcctcttA ATTTTTATCA CTTGGGAACT ATTTGACCTA 001520
001521 ACTTAAGATG CAAGATAAAT ATGACTATTT GACTATCAAA atttattttt gctccatttt tgaaacctat taaaataaat 001600
001601 ataaatgaaa taaaaaggca taaatttatg aagatcacaa gaatgggaga gtgggacaac aataggcaaa tgatgtctgt 001680
001681 aaaattttgg tgcttgcaaa ataaatagat aaatggtaac ggagaccaga gaaagcagaa ccctgagctg gcaggcaggg 001760
001761 aagaattcaa ccagaaacat gttcattact gtgggaaaac tcgagagcgc tcaggaattg taggtagcaa ttactgtaaa 001840
001841 ggtggattta tggattagaa ctgacaagag tagacttggt tgaaaggtat aaggagtagt tagatcacaa gatgttctca 001920
001921 tcttataaaa ccaggcatct gcccctccac actctagcaa aagaccagag gtttcctgaa gaggttgaat tggacaactg 002000
002001 tgaggctcca agatacagac agatacaact gaggatgagg gtgagatatc acactgaaaa tgagggaatt gtttccttta 002080
002081 aataaaagtg tgcgtgctta gtgatgggat tcccagtatt ctggcagctg ggcttacacc tcctcttaag agattgagga 002160
002161 gtttctcttc agggaagtgc ctcgcccaag tgaaacgaaa tacagatact gatatttcag tagctcttga taaaataact 002240
002241 cagctgccat atttgcaatg aagactgctg ttgccaagtc ccatgtatga aaacagaact tccagtcagc aatccggaat 002320
002321 ttttaagaac agatagtaga ggattaccag acatctgagg aaatcccata aaagagaaag agaccagctc acaaaatggg 002400
002401 gaaggggaga ctcttggaag aagcagatac tttaaactcc aaggcgggga caggctgctg tcatcaatat cttcagaaag 002480
002481 gatgagaaat ttaattgttt ccacaaagtg taacaaaaca ccataaagaa gaaacagctg taagacagtc gtattcgtaa 002560
002561 atatttgata gcaaaaatga aggaatcagt aggtatatag gaaatgtatt taaattctcc agaaagtaaa acagagagac 002640
002641 acaaacaata aaagagaaat ttagagatag cagtccatct caggatgtcc aatgtccaaa taataggatt ttcagaaaga 002720
002721 TAATAAAAGT AAATGGGGAG CTAGAATCAG GTGGGATTGT ATGGGTCAGT ACCCAGTCCC ATTCTTGCTC CCCATTTACT 002800
002801 CCACTTTTTC ACTCTGTAGT AGTATTAGAC TTTGTAAACT CTGCAAGTAT AACTTTTATG TTTAAAAATA TTTTACTGAA 002880
002881 AATGGCATTT TAACAAGCAA AAAATAATTA CATGCAAAGA TTAAAAATAT ATATTTGAGT TTTGGTTGAA GACCAATAAA 002960
002961 ATTAAAAGTT GGAAGGAAAA AATACCACTT AGATTTTTTA AAGTGCTAAG TACTTATTTC AGGAAAATTA CTTCAATTGC 003040
003041 CATAGTTAGG TAAATTGAGG AACAATTTTC TCTCAGAAAC AGCAGCACAG CAGTGGCATG GATCACGGAA GAAGTGGCTG 003120
003121 CTATGTGAGT TTGTAATCAA GCATCTTGCC AAGGCGAACA GCTTCCTCCC TGCTGATTTT CTATTTGGTA GCAAGAAGTA 003200
003201 GTCATGATTT ACCTTAATTA TAGCAAGGCT TTTAAAAATT GTGTGAAATT CCTGATTTTT TTTTGTATTC AAGATGTatg 003280
003281 tattgagtgt ctgttatctg gcaagcattg ttttaaacag tttatttata ttgacttatt taatccttag aacagcccta 003360
003361 tgaaggtagg tcttgttgtc attcctattt tacagatgaa gaaactgagg tatagacagg ttaggtaact tgcccaggtt 003440
003441 tactcagctg gcaaacagaa aaggctaggt tttaaatcat ggtagtctgg ttacagaagg cataccctta attaATTCAT 003520
003521 TACTATTCTG CTTGTTAAGG AACCACAGAC ATCTAAGTTT AAATAAATTG CCCACATTCC CATAGCTAGT TATTTTAGAA 003600
003601 GCAATGAATT TTATTGTAAA GCTTCCATCA GCCACCGAAT GCTTAAGAAC TCATCTAAGC CAGTCCTCTC ATTGATTGAA 003680
003681 TAACTAGATC CAAGGGCTGA CCGGGTAGAA GAACCAGGTA TTCCACAGTG ACCAGTCTAG TGCATGTTAG AGACACCTGG 003760
003761 TGTCATTTTT TCTCACCTAC ATTCTCATCC TAGAAGTGTT CATTCATGGT GATATTTAAC GTGTGCTGAA ACTGTTAGGA 003840
003841 TAGCAACCGA GGAATTCTGG GAAATTAGCT TCATTCACAG TTGTGGAATA TAGCCATCAC TGAAATAAAT ATAAAGAAAT 003920
003921 ATATCAGGGT TTTTTATTTT ACGTTTAGCC CCGTTTTATG TGGTGTGTGG GAAACATCAT ATTTTAATGC ATGTAGCAGG 004000
004001 AGCTTAAATA TTTGCCATTA ATCAATGATG TGTAGCACAC TACAGTGTTT CTTAACATTC AAGATTAAGA AATTGCTTTC 004080
004081 ACATATAAAT GCTACAAATT TGGTTGTTTA TTTTTCCTAG TTCAACTTTG TGGGGAAACT TTTGGGTCCA CGTGGCAATT 004160
004161 CTCTGAAGCG TTTACAAGAA GAAACCTTGA CAAAAATGTC CATCCTTGGG AAAGGTTCCA TGAGAGACAA GGCCAAGGAA 004240
004241 GAAGAGTTGA GGAAAAGTGG AGAAGCGAAG TACTTCCATC TCAATGATGA TCTCCATGTT CTCATTGAAG TGTTTGCCCC 004320
004321 ACCTGCAGAA GCTTATGCCA GGATGGGACA TGCTTTGGAA GAAATCAAAA AGTTCCTCAT CCCTGTTAGT ACCATTTTTC 004400
004401 TTGATAGTTA ACTTGTACTT TAAAGTCTTT GCTTTAATCC TTGATACTTC TTGTCTGTAA CTGTTatttg catagctcct 004480
004481 tttctgctgt aaagctgtat ggacatcacc tcaagtagac cttacattgt ccttgtaaat tactgggcat tattccttat 004560
004561 gtatatatga ggtgttagaa tttcaggaag atttaataat atggccaagg ttacatggct aaaaaacttg catagcacaa 004640
004641 tcactagttc aggttttGAA ACGCTTTTCC TACGATTTTA TGTGACACTG TACAACTTTt ttgttctcca acacaaaacc 004720
004721 attagtgcct ctgtgtgcca tgcacagtgc ttggtgttgg catgcagact tgaataaaag cagtccctgc cctcatttag 004800
004801 tataatataa tacgtaattt agaggaaaag agaaacatca acagatgatt tcagtacaac atgataaata taacagacat 004880
004881 aaccataatg agcccagagg ggatgggcta tttagctagc ttCTGCCAAG TATTTTGGAT GTTTTGTTAA AAATTGACTG 004960
004961 TCTGTTTTAA CCCTTTCAGA CACCTTCACA TTGCTAAGGA TGTGACAATT TAAAGGGAAT ACATCTCTAC CTCTGTTACG 005040
005041 AAAGTTGATT TAAGTCTTTT GTGTGATTTG TATGCTCTTG ATAAAAGGAC TTATTATGTC ATTTGCATGC TCTTGATAAA 005120
005121 AAGAATCGTA AAGCATCAAC ACTTTGGCTC TGCAGACAAT TTATTTTAGA GAAGCTGACA CATCTGCCAA GTAGTTCTCT 005200
005201 GGATAAGACT GTCTTTGGTT ATCCCAGGTT AGTTTGGTGG ATTGACTTAC ATACTACAGC ACATGTACTG TGATTATATT 005280
005281 ATCTGTGAGG AAAACAATTA TTATATTTAT AGGGAAAGGA TATTTAAATC ACTTTTGCCT TTAAAAAGCC AGGACATAGA 005360
005361 ATTGCATTAA GTATGTAATA ACCTGGGAAC TGAAATGGCT AGTATTTTCT TTAGTTCCCA TGAGCAAATA TGACAATCTA 005440
005441 TTTCTTCTTT TAGTTTAAAA ACAAAA
[back to top]

Predicted Small Protein

Name NONHSAT129287_smProtein_134:367
Length 78
Molecular weight 8589.0361
Aromaticity 0.0779220779221
Instability index 40.9571428571
Isoelectric point 7.90032958984
Runs 11
Runs residual 0.00677583286279
Runs probability 0.0592089415619
Amino acid sequence MLRNLCVHIADKMRALYDDTPSEPIASGTSGGVMGLMAKKTTMPLSLFIIYIIQKVQNTY
SVHLLVRPFLVANTDYD
Secondary structure LLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHLLLLLLLLLHHHHHHHHHHLLLE
EEEEEELLEEEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL
LLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo
ooooooooooooooooo