NONHSAT129287
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129287 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5466 nt |
Genomic location |
chr8+:136550777..136562225 |
Exon number |
2 |
Exons |
136550777..136555013,136560997..136562225 |
Genome context |
|
Sequence |
000001 cagggctgct caggtaaaat tcaacattgt caccgtgctt aacactttat ctgatatttt attcttcata atgaccctga 000080
000081 aatgtaatga cttttataag ccacacctgg taaatgtgaa actgaaaact agaaatgctg agaaacctct gtgttcacat 000160 000161 tgctgataag ATGAGGGCAC TGTATGATGA CACCCCTTCA GAACCCATAG CAAGTGGGAC ATCAGGAGGT GTTATGGGAC 000240 000241 TAATGGCAAA GAAGACAACT ATGCCGCTTT CGTTGTTTAT TATTTATATC ATCCAGAAAG TCCAAAATAC ATACTCAGTC 000320 000321 CATCTATTAG TTAGGCCTTT TCTTGTTGCG AATACCGACT ATGACTAGCT TGAAGGATTT TTTCTTTAAA AAAAGGAAAA 000400 000401 CAACAAAAAA CAACAACAAA AAAAACCTAC CTTAGGGTGT CCTATAGAAT GCATGGAGGA ATTGAACTTG CAAACTGAAA 000480 000481 AGACAGTAAT AAGAGCTTTA AGCCTAAGAA ATTGTCTCTG GCTTTTCCCT CTAGcagtat tttttacctg ggccacaatt 000560 000561 gacattttaa acaggacact ttggtgaagg gcaggaccat ctgtttctga tgcctgacat aggcctttgc ccctgagtcc 000640 000641 cagtagtgac cctagtcatt gtgacaacca aataaacatg ctaaatattt ccaagtgtcc cacagggagg tgatgcaaca 000720 000721 tctgcagttt gagaaccTGC CGGAGCAGCC AAGCACATTA CCATTATTGT GACTCAGCTC TCAGGACATT CAGTATCCAC 000800 000801 ATAATCAGTT CTAAATTTCA GAATCTCTTG ATTTCCAGTC AAAGGCCAAT TCCTCGGCCG ATCTGGGTGG CCTGGGCCAG 000880 000881 GTCATGCCAT TTTCAGTGTG GTGGCTCCCT TGGTAGCCTT CTCCCACTTG CCATAGGTTC TGAAGGGGAT GCAGTTCCAC 000960 000961 AGTAGGTGGG TCTTGTTCAG ATAAAATTGT ATATATCCAC AACAGTTAAA TTCATCTATT TATTACTTAC TAATTTGGCA 001040 001041 TCAAGTATAC GCAATCtgct ggctgctctc ttaggtgatt ttcgtatact ttcttactta attcatgcga cctgcaccca 001120 001121 cagtaggtaa tatggtctgt gttttgtgga tgaaaagtct gagactcagg agggttaatt tgactCAGGA GATAGAAGTA 001200 001201 ACTTGACTAG GGAGATACAT GGTTGAACAG AGTTGAGAGG AAAAAGAAGG GAAAATAAAA GTGTTTCTGG TTGTCACAGT 001280 001281 ATTCATTTAT GTACTTTTTG TGAACAAAAC ACTAACAGAA GTTAAGTGGA AAAAAGAAAC CCCTAAAGGT ATATAAAAGT 001360 001361 CAATAAAATG CTTTTTCTTT TTACCTGGAA Tgctgtcaag tgacctttaa tcaatcatgt ctttctatgg acttcagatt 001440 001441 cttctgtata aaattagatg tttggattgg atgatttcta aagcctcttA ATTTTTATCA CTTGGGAACT ATTTGACCTA 001520 001521 ACTTAAGATG CAAGATAAAT ATGACTATTT GACTATCAAA atttattttt gctccatttt tgaaacctat taaaataaat 001600 001601 ataaatgaaa taaaaaggca taaatttatg aagatcacaa gaatgggaga gtgggacaac aataggcaaa tgatgtctgt 001680 001681 aaaattttgg tgcttgcaaa ataaatagat aaatggtaac ggagaccaga gaaagcagaa ccctgagctg gcaggcaggg 001760 001761 aagaattcaa ccagaaacat gttcattact gtgggaaaac tcgagagcgc tcaggaattg taggtagcaa ttactgtaaa 001840 001841 ggtggattta tggattagaa ctgacaagag tagacttggt tgaaaggtat aaggagtagt tagatcacaa gatgttctca 001920 001921 tcttataaaa ccaggcatct gcccctccac actctagcaa aagaccagag gtttcctgaa gaggttgaat tggacaactg 002000 002001 tgaggctcca agatacagac agatacaact gaggatgagg gtgagatatc acactgaaaa tgagggaatt gtttccttta 002080 002081 aataaaagtg tgcgtgctta gtgatgggat tcccagtatt ctggcagctg ggcttacacc tcctcttaag agattgagga 002160 002161 gtttctcttc agggaagtgc ctcgcccaag tgaaacgaaa tacagatact gatatttcag tagctcttga taaaataact 002240 002241 cagctgccat atttgcaatg aagactgctg ttgccaagtc ccatgtatga aaacagaact tccagtcagc aatccggaat 002320 002321 ttttaagaac agatagtaga ggattaccag acatctgagg aaatcccata aaagagaaag agaccagctc acaaaatggg 002400 002401 gaaggggaga ctcttggaag aagcagatac tttaaactcc aaggcgggga caggctgctg tcatcaatat cttcagaaag 002480 002481 gatgagaaat ttaattgttt ccacaaagtg taacaaaaca ccataaagaa gaaacagctg taagacagtc gtattcgtaa 002560 002561 atatttgata gcaaaaatga aggaatcagt aggtatatag gaaatgtatt taaattctcc agaaagtaaa acagagagac 002640 002641 acaaacaata aaagagaaat ttagagatag cagtccatct caggatgtcc aatgtccaaa taataggatt ttcagaaaga 002720 002721 TAATAAAAGT AAATGGGGAG CTAGAATCAG GTGGGATTGT ATGGGTCAGT ACCCAGTCCC ATTCTTGCTC CCCATTTACT 002800 002801 CCACTTTTTC ACTCTGTAGT AGTATTAGAC TTTGTAAACT CTGCAAGTAT AACTTTTATG TTTAAAAATA TTTTACTGAA 002880 002881 AATGGCATTT TAACAAGCAA AAAATAATTA CATGCAAAGA TTAAAAATAT ATATTTGAGT TTTGGTTGAA GACCAATAAA 002960 002961 ATTAAAAGTT GGAAGGAAAA AATACCACTT AGATTTTTTA AAGTGCTAAG TACTTATTTC AGGAAAATTA CTTCAATTGC 003040 003041 CATAGTTAGG TAAATTGAGG AACAATTTTC TCTCAGAAAC AGCAGCACAG CAGTGGCATG GATCACGGAA GAAGTGGCTG 003120 003121 CTATGTGAGT TTGTAATCAA GCATCTTGCC AAGGCGAACA GCTTCCTCCC TGCTGATTTT CTATTTGGTA GCAAGAAGTA 003200 003201 GTCATGATTT ACCTTAATTA TAGCAAGGCT TTTAAAAATT GTGTGAAATT CCTGATTTTT TTTTGTATTC AAGATGTatg 003280 003281 tattgagtgt ctgttatctg gcaagcattg ttttaaacag tttatttata ttgacttatt taatccttag aacagcccta 003360 003361 tgaaggtagg tcttgttgtc attcctattt tacagatgaa gaaactgagg tatagacagg ttaggtaact tgcccaggtt 003440 003441 tactcagctg gcaaacagaa aaggctaggt tttaaatcat ggtagtctgg ttacagaagg cataccctta attaATTCAT 003520 003521 TACTATTCTG CTTGTTAAGG AACCACAGAC ATCTAAGTTT AAATAAATTG CCCACATTCC CATAGCTAGT TATTTTAGAA 003600 003601 GCAATGAATT TTATTGTAAA GCTTCCATCA GCCACCGAAT GCTTAAGAAC TCATCTAAGC CAGTCCTCTC ATTGATTGAA 003680 003681 TAACTAGATC CAAGGGCTGA CCGGGTAGAA GAACCAGGTA TTCCACAGTG ACCAGTCTAG TGCATGTTAG AGACACCTGG 003760 003761 TGTCATTTTT TCTCACCTAC ATTCTCATCC TAGAAGTGTT CATTCATGGT GATATTTAAC GTGTGCTGAA ACTGTTAGGA 003840 003841 TAGCAACCGA GGAATTCTGG GAAATTAGCT TCATTCACAG TTGTGGAATA TAGCCATCAC TGAAATAAAT ATAAAGAAAT 003920 003921 ATATCAGGGT TTTTTATTTT ACGTTTAGCC CCGTTTTATG TGGTGTGTGG GAAACATCAT ATTTTAATGC ATGTAGCAGG 004000 004001 AGCTTAAATA TTTGCCATTA ATCAATGATG TGTAGCACAC TACAGTGTTT CTTAACATTC AAGATTAAGA AATTGCTTTC 004080 004081 ACATATAAAT GCTACAAATT TGGTTGTTTA TTTTTCCTAG TTCAACTTTG TGGGGAAACT TTTGGGTCCA CGTGGCAATT 004160 004161 CTCTGAAGCG TTTACAAGAA GAAACCTTGA CAAAAATGTC CATCCTTGGG AAAGGTTCCA TGAGAGACAA GGCCAAGGAA 004240 004241 GAAGAGTTGA GGAAAAGTGG AGAAGCGAAG TACTTCCATC TCAATGATGA TCTCCATGTT CTCATTGAAG TGTTTGCCCC 004320 004321 ACCTGCAGAA GCTTATGCCA GGATGGGACA TGCTTTGGAA GAAATCAAAA AGTTCCTCAT CCCTGTTAGT ACCATTTTTC 004400 004401 TTGATAGTTA ACTTGTACTT TAAAGTCTTT GCTTTAATCC TTGATACTTC TTGTCTGTAA CTGTTatttg catagctcct 004480 004481 tttctgctgt aaagctgtat ggacatcacc tcaagtagac cttacattgt ccttgtaaat tactgggcat tattccttat 004560 004561 gtatatatga ggtgttagaa tttcaggaag atttaataat atggccaagg ttacatggct aaaaaacttg catagcacaa 004640 004641 tcactagttc aggttttGAA ACGCTTTTCC TACGATTTTA TGTGACACTG TACAACTTTt ttgttctcca acacaaaacc 004720 004721 attagtgcct ctgtgtgcca tgcacagtgc ttggtgttgg catgcagact tgaataaaag cagtccctgc cctcatttag 004800 004801 tataatataa tacgtaattt agaggaaaag agaaacatca acagatgatt tcagtacaac atgataaata taacagacat 004880 004881 aaccataatg agcccagagg ggatgggcta tttagctagc ttCTGCCAAG TATTTTGGAT GTTTTGTTAA AAATTGACTG 004960 004961 TCTGTTTTAA CCCTTTCAGA CACCTTCACA TTGCTAAGGA TGTGACAATT TAAAGGGAAT ACATCTCTAC CTCTGTTACG 005040 005041 AAAGTTGATT TAAGTCTTTT GTGTGATTTG TATGCTCTTG ATAAAAGGAC TTATTATGTC ATTTGCATGC TCTTGATAAA 005120 005121 AAGAATCGTA AAGCATCAAC ACTTTGGCTC TGCAGACAAT TTATTTTAGA GAAGCTGACA CATCTGCCAA GTAGTTCTCT 005200 005201 GGATAAGACT GTCTTTGGTT ATCCCAGGTT AGTTTGGTGG ATTGACTTAC ATACTACAGC ACATGTACTG TGATTATATT 005280 005281 ATCTGTGAGG AAAACAATTA TTATATTTAT AGGGAAAGGA TATTTAAATC ACTTTTGCCT TTAAAAAGCC AGGACATAGA 005360 005361 ATTGCATTAA GTATGTAATA ACCTGGGAAC TGAAATGGCT AGTATTTTCT TTAGTTCCCA TGAGCAAATA TGACAATCTA 005440 005441 TTTCTTCTTT TAGTTTAAAA ACAAAA |
Predicted Small Protein
Name | NONHSAT129287_smProtein_134:367 |
Length | 78 |
Molecular weight | 8589.0361 |
Aromaticity | 0.0779220779221 |
Instability index | 40.9571428571 |
Isoelectric point | 7.90032958984 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0592089415619 |
Amino acid sequence | MLRNLCVHIADKMRALYDDTPSEPIASGTSGGVMGLMAKKTTMPLSLFIIYIIQKVQNTY SVHLLVRPFLVANTDYD |
Secondary structure | LLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHLLLLLLLLLHHHHHHHHHHLLLE EEEEEELLEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo ooooooooooooooooo |