NONHSAT129338

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT129338

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

5083 nt

Genomic location

chr8-:139449101..139489699

Exon number

2

Exons

139449101..139454027,139489560..139489699

Genome context

Sequence
000001 AAGAGGGATC TGTGGTGATT TGGGAGCCAA AGGAAGGAGC TCTTCACCCA GTGTAGGGTA TGGTTTGTGA AGGTATCCCT 000080
000081 AGAGAAGGTG ACTCTGCGGC TGAGCTTGAA GGAAGAGAAT TGGTAGGTGA CAAAGAAGAG GTCCACTCAT ATGATCGAAT 000160
000161 TTGAATCAAG GTCTCAAGCT AATCTAAGGA AAAAAAAAAA AGCAGAGAAG CTATATGGCA GAAAGCAGAG AACTGGAAGG 000240
000241 GAAGTCACAA AAGAAGAGAA CATACTTGCA GGCATTGTTT CAGGTGGTGA GTGAAATCTG CAAACAAACA GAAATTCTTT 000320
000321 CTCTCGTGGA ATGTATGTAC TAACTGGAGA AAGCATTGTT TAAAAAATAA GCAAATAGGA TGTCAGGCTG TGTTCAAGAG 000400
000401 AGTGTATTTA GTTCTTCACA CAATAGTGAT GCTGATGGAT AAAGATTTCC AGTTTGGTCT CAATCCAATA AAACACCCCC 000480
000481 ATTCAAAGTG TCATTGTCCC ACTCTTTCCA ACTGATGCCC TAAAGCTCAC AGAAGAGACT TGTTGGGTGT GCAAATTTGG 000560
000561 CTTTCCTCAT AATTCTGCAA CCTGCATAAG AAAGTTTTAG TTCTGATTTT CAGCCTTATC TTCCCTGTGA CTACATGAAA 000640
000641 TAAGAGATTA TTTTAGGGCT ACCCCAGAAA CAAACTTGTT CTCTCATCAG AGCTGAGTTG ATAGACAGTC TGAAGGCTAG 000720
000721 ATCTTGTTAT TTTCCTCTGT TTACTCTCCA GTGCTGTAAA AAATATCCAT CCCAGCATGC TTGTATTCAT CATTAACATT 000800
000801 GTAGCCACGT GGAGCAGCCA CTCGGTCATC CAAGGCACTT GCTAGAGTGA GCACTTCCTC CACTGAGGCT GGAGGGTCTA 000880
000881 CGATGACTTC ACTCACATGT GTGGGGGTCT TGGTGCAGGC GCTAACTGTT CCTCTCTTTC TTTAAGGTCT GTGTTTAGTA 000960
000961 TTCTAGTGTA GGCTTTGTTA CATAGTGGCA GGAACACTCC AAAATAGCAA AGTAGAAGGC TCAGGAACTC ACACAGTTTC 001040
001041 ACTTCTGCAT ATTCAGTTAC CACCCAGACC AAGGGGCATG GAAATTGGCT CTACCTCTTG AGTTGCATGT CATGAAATAT 001120
001121 CATAGCCACT TTTTCAATCA ATTAGAGGAA GCCTACAGTA TGAGTATATC TCAGAAATGT GATAGATTTT AAATTGATCT 001200
001201 TGCCTTTCTA AAGATGTTTC CCATCTATAC TCTGTGAGAG ACACCTCTAA AATATCTCAT GTCAAAAAAG TATTGGGTAA 001280
001281 GGTGTCCAGT AACCTAGGTT TGTGGTCTGG CTCTGGAACT GATTTATGTT ATCTTGTAAT GATAGCAATG ATGATGATTT 001360
001361 TGGTGATGAC GGTGATGGTG ATTTTATTAG ATATGATTTA GACAATGCAG TTAGTACTTT CATGTGCATT ATTATAAATA 001440
001441 TTTAAATTCT AATTTTACCT TTTTTGGACT TTTGTATGTA TTATCTGTTA AATATAAAGC CCATATTTTA CTTTTGTCCT 001520
001521 AGATATTTGT CACTATCTTG CACCCATTTC TCCCTCCTAA TAGCACCCAG ACATTCCTCT AGATGAATTG TCTCTTGAAT 001600
001601 GTATGCTCTT GGTTGAAAGT AACCCCAGAA ATATGCCTTC TTCTGGGGTG GCTTAAGGGT TCCTGAGACA TTTATTTGCA 001680
001681 AGAGCATAGC CAAAAGCTGG GGCGATGACC TTAATATGGC CAGGAAGCTA CCTCTCACCT GGAACTTTAA GTCTTAACTG 001760
001761 AGATGAGTCA ACACAAAAGA AAACATTATA GTTCCTGCAG CCCAGTGGTG GGAACCTGGT GAGCTTGTCA AGTTCTCACT 001840
001841 GATGAGACTG GCAAGAACAC CCTGATAGCT CTTAGTTCTT AGCCTTGTTC ATCACACTAT CTTCCCTATG ATCCTCGCAC 001920
001921 CTGCACTCCA GTTCTCCAGT GGGTCCATTC TTGCACAGGT AAGCCAGGAT TAGTGTTGGC ATCCCAGGAA CCATGACTGC 002000
002001 TTCAGTTGTC TATTGAATTA CTTTAGAAGT ACCTGGAGTG ATGGAAAGTG CTTGGCCAAA GTTTACAAAG CCCTGTAGCC 002080
002081 AATAACTGGT TCCAAATTTC AGGTCTGCCT TTTCTGCTCA CATTTCAACA TTGGACAGTC AAACTTTCTA AGCACGAATT 002160
002161 TCTTCAGTTG TAACATGGGA CACAATAATA CATCCCTAGC AGAGGGGTTA GGATTAAATT AGAGAGCAGC TGTGAAGCAC 002240
002241 CTGGGAGAGC TTCTGGCACA CAGTAACAGT GGAAAGTTCT GGCACTACAG TAGAAAGTTC TTTCCCTTTC TGTTAATGTT 002320
002321 AATGCTTCAT CCCCATTCAC AGAGACTGGA GTATCCCTTG ACTACTCCAG TCAAAGGGAA ACCCAACATG ACATGTTCCC 002400
002401 TCCCCCTAGG AAATGTCCTC CTCTGATGTT ATGAGGTCGG CCTATGAAGC TTTACCTTGG AGTTTGAAGA TGAGACTGGT 002480
002481 GTTTGTAACC CATGAGGACT ACTGAGGTCA CATGGTGTAG TGGAATGAGA ATGGGATTTG GGATCAGGCA GGTCTGAATT 002560
002561 CATACCTAAT GATGACATAT GTGATTAGCT GCTTAATCTT GAACGTCATT TATTGTCCTA TGTGCTATGA TTCTCTCATA 002640
002641 TTGACCACAC AGGGCCATTA TGAAATGATA ATTGGTAATT TACATGCAGG TTCTTTGTAA CCTAGAAGAA TATTATCTTT 002720
002721 GTACTGGAGC CTCCTCAAAG ATTTTCAGGG ATATACACAC CAGAAACTTT GCCTTGTACA GCTCCTGGTG GATAAATGAA 002800
002801 GGCCTTCAAA TGGGCAGGAA ATAATCCAAT TTCCATGAAA GTTAATTGAG CTCTGTGTTT TCTAAAGGCT AATAGCCTGG 002880
002881 TGAGAGATGT CCTGAGTCAA GCTAATGTGA TGACCCACTT GTTTTTTTAG GTACCAGTTA TGGAACAGAA GCCACATCTG 002960
002961 TCACTGATAA CCTGTTTGTA TAGTGACCTC TTCCACCCCA CCCACAAGGT TGCCATGGCA ATTTTAGGTC AAGAAGATCA 003040
003041 TCCCATTGAA AGACAGGAAA TGCTAAGGAG TAAAATGCAG TCCCCAGGAA ACCTGGTTTT AGTCCTTGCT ACATATTATT 003120
003121 AAATGGCTGG TCCAGTATCT GGTTGGGACT ACTGTGCCAG GCATCATCCT CAGGTGATGT CTGATCATCC TGGCCTGTCT 003200
003201 TTGGCAAGAA TCCAGTTCAG TGGGTTTTGC CAGAATCCTT TTACTTCTAA GGTTTTCTCT TAGTTGTTTT CCATCCTCTG 003280
003281 ATCCCTCTCT TGTTCCTTGG TTATATATTT CCCCTTGCTT GTGCTGTATT CAAAATTGAA CCCAGTTTTA TATTGAAGCA 003360
003361 TCTTTTCTCC TGTTTCAATA ATCCAGAATA GAGTCTGTTT CTACCACTTT AACTACTGCC TAGCTCTGTT TTTTTCTTTG 003440
003441 ATAGAGCTCA GAAGTGCAAT TCAAATTTGA TTTGTAGATG TAGCAGCAAT CAAGATTTAG CTGGTATTTG AAGACACTCA 003520
003521 TATTATCACT CTTTCTACTA CCCTTTATTA TATTTTTTGA TTCTGCCCCA CATTATTTTT GCTAAGGAAG GAGAGTTCCA 003600
003601 GGAACTCTCA TGGAGTACTT GAGACATGGC TCTTCAATAG CCACCCGGCA CCTTCTCTTA GATAAGAGGT GTGAAATTAT 003680
003681 AGGAGCTCCT TCTCGCTTGA GAGCCCCTTG AGTAATAATT ATTTAAAAAA AGCTGTTATA ATAAAACTTT GCATTTAAAT 003760
003761 TGCCTCTTAT TCTTAGGATG TCAAAGTGCT TTACAAACAT GAATTGCTAG AAACCTTTTA GGTTAATTAA AATGAGCAGG 003840
003841 TTTCCCAGAC AAAGAAGGTG ACTGTTTTTG TACTCTCGGG TGTTTTTACA GGTGAGCGAA TTGAAGCACA AATAAGTTCT 003920
003921 TTGACTAATC AAATAGAGAT GTTCTGAGAA CAGGTGATTT CAGCATTAGC ACATCAACCA TGCTACCAAA TTTCATTGCC 004000
004001 CTTCGGAATT ATAATGACAA TAATGTAGTG ATTCCTGAAT TCTGGTATTC TTAATAAGAA TATTTGTGCT ACTATTTACT 004080
004081 GAATGGCTGC AGTAAGCCAT GCATTATGCC TGGCACTGGG TTTGTGGTAG TGTGTTGTGT TCTCACAATG CCACTGTGAA 004160
004161 ATAAGTCTTA TCTTCACTTT ATGCTGCTGT AAGATAGGAT TTATCCTCAC TTTACAGCCC TGGACACTCA GTTTGAAAGC 004240
004241 AGCTGAGCCA CTTGTCACGG GTCCTGCAGC TAGGAAATGG CAGAGTGTAT TAGTCCATAT TCACACTGCT ATGAAGAACT 004320
004321 GCCTGAGACG GGGTAATTTA TAAAGAAAAT AAGTTTAATT GATTCACAGT TCAGCATGGC TGGGGAGGCC TCAGGAAGCT 004400
004401 TACAATCATG ACATAAGGGG AAGGAGAAAC AAGGCACCTT CTTCACAAGG CGGCAGGAAG GAGAGGTATC GAGTGAAGGG 004480
004481 GGAAGAGCCC CTTATAAAAC CATCAGATCC CATGAGAACT CACTCATTAC CACAAGAACA GCATGAGAGT AACTGCCCCC 004560
004561 ATGATCCAAT TACCTCCCAC CAGGTTCCTT CCATGACAGG TGGGGATTAT GGGGATTATA ATTCAAGATG AGTTTTGGGT 004640
004641 AGGGACACAA AGCCTAACTA TATCACAGAG CTAGGGTTTT AACCCATGTT TGTTTGATTG CTGTGTCTAT ATTCTTCTTC 004720
004721 TCTACCAATA TCATTACCAA ACGTTATTAC TTTATTCTTC TCTATTTCTA AACCCCTGAG GAATATAACA CATTCCTGTC 004800
004801 ATTAAGAGAA GCTGCTGACT TGAAATGGGA GTTCAGTAAT GGCAGTGAGA GGAGATGAAG TAACACCGTT GGAGGAGGTC 004880
004881 AGAGCACAGG GTGCCTTAAA AACAAGCCAC AGCATTTGGA CTTTATTCTC CTTATTTATG CCATCCTGTT TATCAGTATT 004960
004961 GATCTGCAGC ACTCCAAGGT CCAAGGGACA AAGGCAAGGA AATCTCCAAC CTCTCAGAAT ATGAGAAGAT ACTATAGTAA 005040
005041 ATATGTCAAT AAATTTTATT CTACAACAAA AAAAAAAAAA AAA
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Predicted Small Protein

Name NONHSAT129338_smProtein_4838:5023
Length 62
Molecular weight 6755.8258
Aromaticity 0.0491803278689
Instability index 46.0344262295
Isoelectric point 9.49285888672
Runs 7
Runs residual 0.0380629357452
Runs probability 0.0762989880637
Amino acid sequence MAVRGDEVTPLEEVRAQGALKTSHSIWTLFSLFMPSCLSVLICSTPRSKGQRQGNLQPLR
I
Secondary structure LLLLLLLLLLHHHHHHHHHHHLLLHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLLLLL
L
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL
L
PiMo ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii
i