NONHSAT129587
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129587 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2067 nt |
Genomic location |
chr8+:144642210..144645229 |
Exon number |
5 |
Exons |
144642210..144642941,144643172..144643274,144643540..144643593,144643912..144644691,144644832..144645229 |
Genome context |
|
Sequence |
000001 ttatttaAAT tattttttga ggtgaggttt tgctatctcg gccagggtgg tcttgaactc ctggcctcaa gcagtcctcc 000080
000081 tgcctcggcc tcccaaagtg ctgggattac aggggtgagc cactgtgcca ggtcCCAGCC TTGCTCTTGG GAAGGTCACA 000160 000161 ACCTTGGGGC ATCAGGAAAG TCCCAGAGGC AAAAGAGCGC TGTGGCCGGA ACCAGCTTGC AGGAAGGAAG CTGCAGGGGT 000240 000241 CATCTGGGGC CTCCGCTGCC AGGACTGGAT CCTAAGGACC GGACTGAGCC CCAGGCTGCT GTGAGGACAA GGGGTGGTGT 000320 000321 GAACACGGGG GCCCAGGTGA GGGGGCCGCA CCTCGAGTCT GGACTTGGAG TCCCCGAGTC CACCTTTCCT CATGGGGTCC 000400 000401 CGTCCCCGTG GGGAGCACAC GGAGAGGCTG CCGGTGCCCC GGCACCCACA GACCTCTGGA GGGCCCCTCT GCACCACCTC 000480 000481 CCCCGGTGGC GTGGGGCTGT CAGGGGAGGG AAGACGCCTT CAGGGGCTGC GGCCCAGCGA GCTTTGCTGC TCCTCGGACA 000560 000561 CAGGCACCTG CGGCAGCCAG AACACAAAGT CCTGCAGCAG CTGCGCAGCC GCGGGGACAA CGTGTACGTG GTGACTGAGG 000640 000641 TGCTGCAGAC ACAGAAGGAG GTGGAAGTCA CGCGCACCCA CAAGCGGGAG GGCTCGGGCC GGTTTTCCCT GCCCGGAGCC 000720 000721 ACGTGCTTGC AGGGTGAGGG CCAGGGCCAT CTGAGCCAGA AGAAGACGGT CACCATCCCC TCAGGCAGCA CCCTCGCATT 000800 000801 CCGGGTGGCC CAGCTGGTTA TTGACTCTGA CTTGGACGTC CTTCTCTTCC CGGATAAGAA GCAGAGGACC TTCCAGCCAC 000880 000881 CCGCGACAGG CCACAAGCGT TCCACGAGCG AAGGCGCCTG GCCACAGCTG CCCTCTGGCC TCTCCATGAT GAGGTGCCTC 000960 000961 CACAACTTCC TGACAGGTCA GTGCCCTCCT GACCGCCCCG GGGACCTTTG GTGGGCTCTC CTGCCCCCTG GGGTCTGCCT 001040 001041 GTCCTGACCG AGGCTTTCCA GGGCCCTGTA AGCACCTGGG CAGTGCCAGC CCTTCTGTCC CTACAGATGG GGTCCCTGCG 001120 001121 GAGGGGGCGT TCACTGAAGA CTTCCAGGGC CTACGGGCAG AGGTGGAGAC CATCTCCAAG GAACTGGAGC TTTTGGACAG 001200 001201 AGAGCTGTGC CAGCTGCTGC TGGAGGGCCT GGAGGGGGTG CTGCGGGACC AGCTGGCCCT GCGAGCCTTG GAGGAGGCGG 001280 001281 TGAGCGGGGG AGGGTGCCCG GGGCACACAA GGCCTGCCCA GCCAGCCAGA CTCACCTGCC CTTCCCGTGC CCACAGCTGG 001360 001361 AGCAGGGCCA GAGCCTTGGG CCGGTGGAGC CCCTGGACGG TCCAGCAGGT GCTGTCCTGG AGTGCCTGGT GTTGTCCTCC 001440 001441 GGAATGCTGG TGCCGGAACT CGCTATCCCT GTTGTCTACC TGCTGGGGGC ACTGACCAGT GAGCGGCCGC TGGGGGCAGG 001520 001521 TGGCGGGTGG GAGGGAGGGA GGTGGGCTTT CCCGGTGGGC GTTCAGAAAC CCCCTTTTAC CTGACTCTCT CCCAGTGCTG 001600 001601 AGTGAAACGC AGCACAAGCT GCTGGCGGAG GCGCTGGAGT CGCAGACCCT GTTGGGGCCG CTCGAGCTGG TGGGCAGCCT 001680 001681 CTTGGAGCAG AGTGCCCCGT GGCAGGAGCG CAGCACCATG TCCCTGCCCC CCGGGCTCCT GGGGAACAGC TGGGGCGAAG 001760 001761 GAGCACCGGC CTGGGTCTTG CTGGACGAGT GTGGCCTAGA GCTGGGGGAG GACACTCCCC ACGTGTGCTG GGAGCCGCAG 001840 001841 GCCCAGGGCC GCATGTGTGC ACTCTACGCC TCCCTGGCAC TGCTATCAGG ACTGAGCCAG GAGCCCCACT AGCCTGTGCC 001920 001921 CGGGCATGGC CTGGCAGCTC TCCAGCAGGG CAGAGTGTTT GCCCACCAGC TGCTAGCCCT AGGAAGGCCA GGAGCCCAGT 002000 002001 AGCCATGTGG CCAGTCTACC ATGGGGCCCA GGAGTTGGGG AAACACAATA AAGGTGGCAT ACGAAGG |
Predicted Small Protein
Name | NONHSAT129587_smProtein_1106:1282 |
Length | 59 |
Molecular weight | 6997.9418 |
Aromaticity | 0.155172413793 |
Instability index | 90.3844827586 |
Isoelectric point | 11.330871582 |
Runs | 7 |
Runs residual | 0.035903751421 |
Runs probability | 0.031279178338 |
Amino acid sequence | MGSLRRGRSLKTSRAYGQRWRPSPRNWSFWTESCASCCWRAWRGCCGTSWPCEPWRRR |
Secondary structure | LLLLLLLLLLLLHHHHLLLLLLLLLLLLEELHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |