NONHSAT129587

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT129587

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2067 nt

Genomic location

chr8+:144642210..144645229

Exon number

5

Exons

144642210..144642941,144643172..144643274,144643540..144643593,144643912..144644691,144644832..144645229

Genome context

Sequence
000001 ttatttaAAT tattttttga ggtgaggttt tgctatctcg gccagggtgg tcttgaactc ctggcctcaa gcagtcctcc 000080
000081 tgcctcggcc tcccaaagtg ctgggattac aggggtgagc cactgtgcca ggtcCCAGCC TTGCTCTTGG GAAGGTCACA 000160
000161 ACCTTGGGGC ATCAGGAAAG TCCCAGAGGC AAAAGAGCGC TGTGGCCGGA ACCAGCTTGC AGGAAGGAAG CTGCAGGGGT 000240
000241 CATCTGGGGC CTCCGCTGCC AGGACTGGAT CCTAAGGACC GGACTGAGCC CCAGGCTGCT GTGAGGACAA GGGGTGGTGT 000320
000321 GAACACGGGG GCCCAGGTGA GGGGGCCGCA CCTCGAGTCT GGACTTGGAG TCCCCGAGTC CACCTTTCCT CATGGGGTCC 000400
000401 CGTCCCCGTG GGGAGCACAC GGAGAGGCTG CCGGTGCCCC GGCACCCACA GACCTCTGGA GGGCCCCTCT GCACCACCTC 000480
000481 CCCCGGTGGC GTGGGGCTGT CAGGGGAGGG AAGACGCCTT CAGGGGCTGC GGCCCAGCGA GCTTTGCTGC TCCTCGGACA 000560
000561 CAGGCACCTG CGGCAGCCAG AACACAAAGT CCTGCAGCAG CTGCGCAGCC GCGGGGACAA CGTGTACGTG GTGACTGAGG 000640
000641 TGCTGCAGAC ACAGAAGGAG GTGGAAGTCA CGCGCACCCA CAAGCGGGAG GGCTCGGGCC GGTTTTCCCT GCCCGGAGCC 000720
000721 ACGTGCTTGC AGGGTGAGGG CCAGGGCCAT CTGAGCCAGA AGAAGACGGT CACCATCCCC TCAGGCAGCA CCCTCGCATT 000800
000801 CCGGGTGGCC CAGCTGGTTA TTGACTCTGA CTTGGACGTC CTTCTCTTCC CGGATAAGAA GCAGAGGACC TTCCAGCCAC 000880
000881 CCGCGACAGG CCACAAGCGT TCCACGAGCG AAGGCGCCTG GCCACAGCTG CCCTCTGGCC TCTCCATGAT GAGGTGCCTC 000960
000961 CACAACTTCC TGACAGGTCA GTGCCCTCCT GACCGCCCCG GGGACCTTTG GTGGGCTCTC CTGCCCCCTG GGGTCTGCCT 001040
001041 GTCCTGACCG AGGCTTTCCA GGGCCCTGTA AGCACCTGGG CAGTGCCAGC CCTTCTGTCC CTACAGATGG GGTCCCTGCG 001120
001121 GAGGGGGCGT TCACTGAAGA CTTCCAGGGC CTACGGGCAG AGGTGGAGAC CATCTCCAAG GAACTGGAGC TTTTGGACAG 001200
001201 AGAGCTGTGC CAGCTGCTGC TGGAGGGCCT GGAGGGGGTG CTGCGGGACC AGCTGGCCCT GCGAGCCTTG GAGGAGGCGG 001280
001281 TGAGCGGGGG AGGGTGCCCG GGGCACACAA GGCCTGCCCA GCCAGCCAGA CTCACCTGCC CTTCCCGTGC CCACAGCTGG 001360
001361 AGCAGGGCCA GAGCCTTGGG CCGGTGGAGC CCCTGGACGG TCCAGCAGGT GCTGTCCTGG AGTGCCTGGT GTTGTCCTCC 001440
001441 GGAATGCTGG TGCCGGAACT CGCTATCCCT GTTGTCTACC TGCTGGGGGC ACTGACCAGT GAGCGGCCGC TGGGGGCAGG 001520
001521 TGGCGGGTGG GAGGGAGGGA GGTGGGCTTT CCCGGTGGGC GTTCAGAAAC CCCCTTTTAC CTGACTCTCT CCCAGTGCTG 001600
001601 AGTGAAACGC AGCACAAGCT GCTGGCGGAG GCGCTGGAGT CGCAGACCCT GTTGGGGCCG CTCGAGCTGG TGGGCAGCCT 001680
001681 CTTGGAGCAG AGTGCCCCGT GGCAGGAGCG CAGCACCATG TCCCTGCCCC CCGGGCTCCT GGGGAACAGC TGGGGCGAAG 001760
001761 GAGCACCGGC CTGGGTCTTG CTGGACGAGT GTGGCCTAGA GCTGGGGGAG GACACTCCCC ACGTGTGCTG GGAGCCGCAG 001840
001841 GCCCAGGGCC GCATGTGTGC ACTCTACGCC TCCCTGGCAC TGCTATCAGG ACTGAGCCAG GAGCCCCACT AGCCTGTGCC 001920
001921 CGGGCATGGC CTGGCAGCTC TCCAGCAGGG CAGAGTGTTT GCCCACCAGC TGCTAGCCCT AGGAAGGCCA GGAGCCCAGT 002000
002001 AGCCATGTGG CCAGTCTACC ATGGGGCCCA GGAGTTGGGG AAACACAATA AAGGTGGCAT ACGAAGG
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Predicted Small Protein

Name NONHSAT129587_smProtein_1106:1282
Length 59
Molecular weight 6997.9418
Aromaticity 0.155172413793
Instability index 90.3844827586
Isoelectric point 11.330871582
Runs 7
Runs residual 0.035903751421
Runs probability 0.031279178338
Amino acid sequence MGSLRRGRSLKTSRAYGQRWRPSPRNWSFWTESCASCCWRAWRGCCGTSWPCEPWRRR
Secondary structure LLLLLLLLLLLLHHHHLLLLLLLLLLLLEELHHHHHHHHHHHHHLLLLLLLLLLLLLL
PRMN -
PiMo -