NONHSAT129937
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129937 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3276 nt |
Genomic location |
chr9+:746431..751056 |
Exon number |
4 |
Exons |
746431..746497,747272..747365,747412..747469,748000..751056 |
Genome context |
|
Sequence |
000001 GACAAGAAAG GAGAGATGAA GCCGGACACt tttttttttt tttttttttt gagaatggag tctcactAGC CCAAGTTCCT 000080
000081 ACAGATCCAA AATGGCACAA TAAAAGCAGg agagagagag agagagagag agtgtgtgtg tgtgtagaga gagagagaga 000160 000161 gGAGCAAATA AGGTAGTACC TCTGGTGGTT CCCGGGCCTG GGAATTTTCT TTGTTCCATg tggcatgtac tgtagtgcca 000240 000241 gctacttagg ggttgagatg ggagaatcac cttggcccag gaagttgagg ctacagtaag ccatgattgt gccactgcac 000320 000321 tccagcctgg gtaatagagt gagaacctgt ctcggaaaaa aaaaaaaaaa aaaaaaaGGA AGGTTTAAAT CTTTAAGTGA 000400 000401 TGAAAAGACA GCTTCCCAGA AACCTTGCCT TGGAAGTTGA ACCACGGACA GTTGGGAGCC ACCCCAAGAC AACAGGAGTG 000480 000481 GAACAGTGGG ACTTTTGAGA GTTTAACCTT AAGAAAGTAA AACTAAgcca ggtgtggtgg ttcacacctg taatctcagc 000560 000561 tactgggaca aaggctgagg tgggaggatt gcttgaatcc aggagtttga ggccagcctg gccaatgtag tgagaccccc 000640 000641 atctctttaa aaaacaaaca aaCAAAGGAA AAAAAAACTG GCAACTTGTC GTGACACTAT TACGACTAAA CTGACAACTA 000720 000721 AATGTCTCAC CAAGGGGGAG GAAGGGTGCT TCTGGAGACG TTTACTAGGA ACACTTCATC TAGCTCTGGT ATCCAAAATA 000800 000801 AATGAAGCTC TGAGCGCTTT CCTTGTAAGT TAATACTTGG GAGAACAACA TTATCCCTGA TTTTTGTACT ACTGAAGTAC 000880 000881 TGCCGATATC TGACAATCCT TGCAGATGGA ATCACATAAG AAAACTATTT CTCCTTCAAA GGAAATAATG ACCAAACATA 000960 000961 ACCTTTCTTT AAATTCTGCT AGATCTTTTG TGGGGGAACT TGCTACAAGT AGAATTACAT TTTTATGATT TTGTATAAGC 001040 001041 CTTCCCTTCA CGAGACACTT AAGAATTTCC AGAGGGAGCA GGTAGAAAAT GCAAATTTCA gtcggacacg gtggctcagg 001120 001121 cccataatcc cagcactttg ggaggccgag gcaggcagat cacctgagct caggaatttg agatcagcct gggcaacatg 001200 001201 gtgaaacccc acctctacta aaactacaaa aaactagccg gacgtgatgg tgcacgcctg taatctcagc tactcaggag 001280 001281 gcggaggttg cagtgagtca agatcacgcc acggcactcc agcctggcca acagaataag actctgttct caaaaaacaa 001360 001361 acaaacaaac aagcaaaTTT CCAGCCTGGT CTGAGAATCC CCATCCTTAA CAAGCATCCC AGGTGTTTCT GAACATAGCC 001440 001441 TTTGGTCCAC ACTAAGAAGC TGTTGCTCCC AAAGTATGAG ACATGATGCA TCTGTTCTTC CCCACACATG TTAGGCAAGG 001520 001521 TGGGGGAACT ACATCAAAAC AAACATTGGC TTTACCTTAG CTCTCTAAGG AGCCGGGCTT CCACTGGTGA TCAGGATCCC 001600 001601 ACATAGGTTT TCTGTGGTGC TGCACATCCA TGTTCAGTAG CATTTCTGCA TCTCCTGGAA TATAGTCATT TCTAGAAGTC 001680 001681 CAGGAACCAT GACTGCCACA GATCCATTTT TCTGTGCTTG TAAGGACCAG AGAAGGTGGC TCAGTATATA GGTGACAGTG 001760 001761 GCTGGGCAGG CAGACAGCCC TTAGAATATT TTCCCAAGCT AATCTTTTCC ATTTCCACTT CCTCGTGGAG TTGGACTATT 001840 001841 ACTGCTCAGA AGGAGGCCAT GAACCATTGC TTTGGCTTTG GAATAAAGAA TTTTCCATTT TCTTTTTTTT ACTAAAAGCA 001920 001921 CCTTTTTTTT AAAGCCCTAG GCCTTAGCCA GAAACTGTTC TACTTTCTGC ATAAGGAAAT TACTAATCAT ACGTTTTCTC 002000 002001 TGCTCTTATT CAGCATGGCT GTAATTTAAA AGCCAGCTGA TTATAAAAAT ATAAAGTACA TTTTGTTGCA GTTTCTTACC 002080 002081 ACAAAGGATG TGGCTGAACC GTAGACCACA ACGTTCCTGA GCTGCTCACG CTCGAACCCC TCCCCACTGA AGGCACCAGC 002160 002161 TACTCCCTGC AGGGACCAGA CAGTCATGGC TTTTCAAGCA TGAAAGATGG CATTATTTGG AACTTGTAAT GATATCCTTG 002240 002241 AGATACCTAT CCTGAATTCT GGCAAGGATC TTGCAGTGAA GCTGGAAAAC AACATATCAT TTTTGCAGGT GCATGCTTAG 002320 002321 ACAGAAATGT CTGATTTAGA GGATGTTGGG AAGGAGCTGG CATTTTAAGA ATCCAGCTGC CCACTGCATC TCCATTAAGA 002400 002401 CCTTTGTTGA TTAAATAGGT AAGAGGATGG AAAACATATC CCTCATTTTC ATAAAATGGA AGCTGCATAA CAAATATTCC 002480 002481 TATTTCTAAA ACCAAATGTC AATCTTGTAT TTGAGCCAAA ATAACTTTTA CACTTGTTCC CCATTCCCCA ACCCAGAAGG 002560 002561 AACTAGTTAC CCAGCCCTAG AAACCACCTG GAAGGCTAAG GCTGTACGAC TGAGGGCGAG AGAAAATCCC TGAGCTGCAG 002640 002641 ACAGGCAGGT GCTGCTTTGC TGTCACTGGT GCAGGCAGCT CGATGCCTTG TTGAGGCTGG TTGTAGGAGA GCAAGTGCCA 002720 002721 GCTGGGCAGG CCGCTTCTCA TGTGTCGGGC AGCAAAGAGA TTCTTGCTAT GGTCCCATCT GCTCTTTTAG GAAGTACTGG 002800 002801 ATGTGCTTAA ACAGGTAATA AGGAAAATAT TTATTAGGTA AAATCCCTGA GAGTTCAGAG AGCTCACCCA CCCCCAATCC 002880 002881 TGCCTAAAAT ATGTCACCCC CACCCCCAGA AAAATCCAGT CTTCCAACAG GAAGCTTATT AGGATGAAAT CTCATGCTTC 002960 002961 GGTTTGTAAC ACCATCTGCC AGGACTGAGA AGTTCCGGTG CCTAGCTGAG AAATACTAGT TGAATGAATG AGTGTAAaaa 003040 003041 aataactgat ggtgttagaa gtcaggagtg ttgccatgag ggagctggaa ggagcccaaa tggggctggt gggctcctgg 003120 003121 taatggtcaa tttcttgcct ggggggtagt tgcactgtta tgctcacttt gtgaccattc atcaggctgt agacacacgt 003200 003201 gtgtgctttc ctgtatgtat attaacttca atttttttta aagtttaaga aaaTGAAAAA GTTTGATCAA AAAAAA |
Predicted Small Protein
Name | NONHSAT129937_smProtein_2495:2632 |
Length | 46 |
Molecular weight | 5163.7973 |
Aromaticity | 0.133333333333 |
Instability index | 57.1024444444 |
Isoelectric point | 9.03302001953 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0306356776946 |
Amino acid sequence | MSILYLSQNNFYTCSPFPNPEGTSYPALETTWKAKAVRLRARENP |
Secondary structure | LEEEEELLLLEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |