NONHSAT130060
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130060 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5494 nt |
Genomic location |
chr9+:4483537..4489030 |
Exon number |
1 |
Exons |
4483537..4489030 |
Genome context |
|
Sequence |
000001 gtgaaacccc atctctacta aaaattcaaa aaaattagct gggtgtggtg gtgcacgcct gtaatcccaa ctactcaaga 000080
000081 ggctgaggca ggagaatcac ttgaacctgg gaggcggagg atgcagtgag ccgatatcat gccactgcgc ttcagcctgg 000160 000161 gcaacacgag tgagacttcg tcttgggaaa aaaaaaaaaa aaaaaGAGGT GTtggttaag tgcacaaatt ctagagccag 000240 000241 accatctggc tcaacccttt ctcctcctgt tactgacagg gaaaacttac acaaggagct gaatcttttt gtgcttcagt 000320 000321 ttcctcagct gtaagataat gatgataaGC CATCATATCT CATTTGATTC TTCCAGCAGC CTCatgaaga aacaataatc 000400 000401 ctcacctcac tgagatactg agaggaccaa gtgaattagt ttgggccaag tgcttagaag agcgcctggt atataagtgc 000480 000481 tTTGTGTTTG CTTTTGTTGT TGTTGTTGTT ATTACCAGCT AAAATGGAAC TTCTATGTAG CAATAGTATA AATATAGTTT 000560 000561 AAAATCCACT TGGCCCGCtg aaattgcctt tgcaaaatta taacagtaag agaaatctga catagctgac tctacttggc 000640 000641 ttctaacctc taagctatcc ttgttcattc ctgggcataa gccaaactaa cttttttttt ttattttttt tatttttttg 000720 000721 agacggagtc tcgctctgtc gcccaggcta gagtgcagtg gcatggtcaa gactcactgc aacctctgcc tcccaagttc 000800 000801 aagcgattat cctgcctcag cctcccgagt agctgggacc acaggtgtgt gctaccatgc caggctaatt tttttttttt 000880 000881 tttttttttt tttttttttt gagacagagt cttgctctgc tgcctaggct gcagtgcagt ggctcagtct cagctcacct 000960 000961 taacctctgc ctctcgagtt caagcaatta tcttgcctca gcctcccggg tagctgggat tacaggccct gccaccacac 001040 001041 ctggctaatt tttgtatttt tagtagggac aggtttcacc atgttggcca ggctaggctc gaactcccga cctcaggtga 001120 001121 tccacccacc ttggcctccc aaagtgctgg gattataggc gtgagccact gtgcccagTG taggccaaac taactttagg 001200 001201 aggaagttat agtttaacct taaagtaaag atagtaatag cccttcccaa aactatccct tcctcattgg aggtcaggaa 001280 001281 tcgtctttgt agaaccaatg aaaagacaca agattaggat tatgaaggga gcctgaattc tgctaagttg taggcataaa 001360 001361 ttataaccaa ccatcggtcc agaggacaca agatttgtaa cttctccaat ttactcctgt agataacatc atcattattg 001440 001441 tagaacctaa gattggtttt ctttttcctt tttttgGGGG GGTGGGGGTG GTGGGgggac agggtttcac tcccgtcgac 001520 001521 caggctggag tgcagtggag ccatctcggc tcactgcaac ttctacctcc tgggttcaag cgattctcct gcctcaggct 001600 001601 cccgagtagc tgggattaca ggcactcacg accatgccca gctaattttt gtatttttag tagagacagg gtttcaccat 001680 001681 gttggccagg ctgttcttaa actcctgacc tcaagtaatc catcctcctc ggcctcccaa agtgctggga ttacagacgt 001760 001761 gagccaccgc gctcagccct aaggttggtc ttctgagatg tttttcagac ttggatttct gaggactggc tgactacact 001840 001841 cagatccaca aatcaaccag tcctgtagcc ccaccccaga gaccgactct gcataaggac cactttccac acccctgtga 001920 001921 tttcatcttc atccaaccag cagcatctgt tccctaaatc ctgactacca agttattctt aaaaactcca gcctccaaat 002000 002001 ttccagggag gctgatttga gtaataactt cctgtctccc catgtgacta gctttgcatt aattaagctc catctttaca 002080 002081 acaataccag tgtttcagtg aatcagctct acctgtgcgg caggcaagaa cccatcaggg gattgcaCTA CCAGTGATCT 002160 002161 ACTTTTGAGA CTCCTGCCTC TGCttttttt tttttttgag acggagtttt gttcgctctt gttgcccagg ctggagtgca 002240 002241 atgtcgcaat ctcagctcac tgcgacctcc gcctccccag attcaagcaa ttctcctgcc tcagcctccc aagtagctgg 002320 002321 aattataggt tcctgccacc atgcccagct aattttttgt atttttagca gagatggcgt ttcactatgt tggccaggct 002400 002401 ggtctcaaac tcctgacctc aggaatccac cccccttggc ctcccaaaga ggtgggatta caggcgtgag ccgccgcacc 002480 002481 tggccCGACT TTTGCTTTTA GTCGGGGAGa tttttattat ttcaaaatgt ttgtatatat tgaaattttt aaaatctttt 002560 002561 atattGTACT ATTTTCAATG CATAATTTAA ATGAACATAA AACAAGTATG CACTATAGGA GCTTTAGGtg ttgttgggct 002640 002641 cagaatccaa taccccaaaa tatggcattt tgacatgttg acatggagaa acctcaaggt ctctctgact tcccctgcca 002720 002721 ccgtctccca caaagaagtg gaagttcctt tatctgcgta agattcagac ccatcaaaga aagtaattgc ttgttcttcc 002800 002801 cctccctgta agaccaagaa tgtaaccaca cctgaacact ttcactatca aagagaacta ttcacacatt aatctctgtt 002880 002881 cagagatcca ttcattctcc ctagtaatcc cctcagcaat tcctcttctc ttcacctccc aaaacctgtt ttaccaggat 002960 002961 tcaagccccc attctttctg taacctccag atagtatata aacttctgga cctcattggg aggctaggtc ttcattttga 003040 003041 agtctcccgt gtgtatacgt tcaatacatt ggtatgcctt ttctcctatt aataaatctg cctgtcagtg attttgaagc 003120 003121 aaaccttcag gggaccaagg gccttggtcc tcccaGTGTG AAAGTGCAAT GGGTGATGTA AGGCCTCTtg tcacccaggc 003200 003201 tggagtgcag tggtgcaatc atagctccct gcaacctcaa actcctgggc tcaagccatc ctcttgcctc agcctcccaa 003280 003281 gtagtgagga ctacaggcat gtgccatcat gcccaggtta tttatttatt tttttaagtt ttgtagagcc aagatttcac 003360 003361 taagttgccc aggttggtct caaactcctg gcttcaagtg atacttctgc ctcagcctcc caaagtgctg ggaatatagg 003440 003441 tgtgagtcga cactcccggc TCTATGGTAG ACACTTTGGA AATGCAAAAA GTAGAAGGCA AAGAAGACCA TTGTTAAAAT 003520 003521 TTTGACATAT TTCTTTTGTC ATATTctcca cctactgggt tcaagcgatt ctcctgcctc agcctctcga gtagctggga 003600 003601 ttacaggcac ccgccaccac gcctggctaa tttttgtatt tttagtagag atgggCAATT CCTGATGATC AATGAGCAAG 003680 003681 AGTTCTCGTG GGTCTGAAGG GGTTCAGAGT GTGTTAATGA CAGGCAGGTG TTAAAAGATG GTGTTAAGAG ATGCCTGTCC 003760 003761 AGGTTGACTC CAAGTAAAAT TGGTGGTGAT ATttgttttg tgccagggag tgttctaagc ctttcacaca gattattgta 003840 003841 ttaaattatt aaaatacctc catgaggtaa agataattaa tgcccccatt ttacagatga agaaactgag acataaaaaa 003920 003921 tttaagccag gtgcccaagg tcaccaagct gataagtggt ggtgctggga tttaagccta aatactttac cccgagaacc 004000 004001 cTAGTGTAAT TGTCTTATTA CAACCCAGAA AGTTGTGATG TACACATAGT TCCTCAGATG CTTCCACTTT TTTCTCCCCT 004080 004081 CAGGAATGTT TATTTTGTAA ATACTGCCCT ATCTACAACT GTAATGAGCA TGGGTATGCT TATGGTCAAC ACtttttttt 004160 004161 ttttttaaat agatagagtc tcgctctgtc acccaggctg gagtacagtg gtacaattat agctccctgc aacctcgaac 004240 004241 tcccgggctc aaactatcct cttgcctcag cctcccaagt agcagagact acaggcatgt gccatcatgg ccagattatt 004320 004321 attattatta agttttgtag aatcaagatt tcactaagtt gcccaggttg gtctcaaact cctagcctca agtgatcctt 004400 004401 ctgcctcagc ctcccaaact gctgggaata taattgtgag ccaacacgcc cagcTCTATG GTAGACACTT TGGAAATATA 004480 004481 AAAGATAGAA GGCAAAGATG ACCATTGTTA AAATTTTGGC ATATTTCTTC TGGTCTTTTT TTCTAAGCAC ATGGTTTTAT 004560 004561 TTCGTCTGTT TGTTGGTTGG TTGGTCGGTT TAGtttttgt agagacagtg gtctaattat gttgtccagg ctggtcctaa 004640 004641 actcctgggc ttaagcagtc ctaccatctc ggcttcccaa agtgctggga ttacgggtgt gagccactgc acctggccAa 004720 004721 tatgtttatt ttacacacat gtgatcaaat tgtacatgca attttagtat ttctttcttc cctttatatt tataaatata 004800 004801 gatttataac atgtgccatc ccatgctgtt aaaaacttca taaacttcct ttatgtaggc tgcataaggt actgttgctt 004880 004881 ggcagttcca taatatattt accattccat ttatgttgga catttgcgtt ttttccagct gtttttttac tgtGGGACAA 004960 004961 ATCTGTTCTC TCGCGCACGC TCTCTCTCtt ttttttttat gagacagggt ttccctccgg tcgcccaggc aggagtgctg 005040 005041 cagcgtgatc tcggctcacc gcaacctcca cctcctgggt tcaagtgatt ctcctgtctc agcctcccga atagctggga 005120 005121 ttacaggtgc atggccctaa acccggctaa tttttgtatt tttggtagac gggatttccc catgttggcc aggctggtct 005200 005201 cgaactcttg acctcaagtg atccgcctgc cttggcctcc caaattgctg gaattacagg tgtgagccat cgcgcccggG 005280 005281 ACTATTCTCC CTTTCTTGAT AGTTTCCCTT CTGACATTTC CTTCCttctt tctttctttt ttcttttttt ttgacagtct 005360 005361 cgctctgtcg cctaggctgg agcgcagtgg cttgatctca gcttactgca atctccacct tccaggttca agcgattctc 005440 005441 ctccctcagc ctcccaagta gctgcgacta caggcacgtg ccaccacgcc cggc |
Predicted Small Protein
Name | NONHSAT130060_smProtein_2240:2500 |
Length | 87 |
Molecular weight | 9136.1189 |
Aromaticity | 0.0813953488372 |
Instability index | 70.3197674419 |
Isoelectric point | 7.71636962891 |
Runs | 11 |
Runs residual | 0.0117146824019 |
Runs probability | 0.0435355141237 |
Amino acid sequence | MSQSQLTATSASPDSSNSPASASQVAGIIGSCHHAQLIFCIFSRDGVSLCWPGWSQTPDL RNPPPLASQRGGITGVSRRTWPDFCF |
Secondary structure | LLLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHLEEEEEEEELLLEEEELLLLLLLLLL LLLLLLLLLLLLEEEEELLLLLLLLL |
PRMN | - |
PiMo | - |