NONHSAT130068
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130068 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1279 nt |
Genomic location |
chr9-:4768617..4769895 |
Exon number |
1 |
Exons |
4768617..4769895 |
Genome context |
|
Sequence |
000001 CTGGGGACCC CGTTTAGAGC AGCTTTGACC TTGGCTTATT GAATTTGTCT TCTGCTGCGT TACAGGAGGT TCCAACCCTC 000080
000081 CAGAGCAGAA AGATGTGTGA CCAAAATACC TCCCCAGATT ATTGGGCAGG AGGGACAGAG AGAAGGGGAT TTCTCCTGAA 000160 000161 GACTCCCTAG TTTAGCGGGG CCACCCTCTC TTATGACTGC CTGTGGAATA GAAAGAGGAG AGCCCTCATT TTCCATGGTT 000240 000241 CTAAGGGTAG AATTCTAAGA AGTCCCTTGG AAGTAATTTC ATCCAGAAGG AAGCATTGCC ATACACCTCT CCATCCAATA 000320 000321 CTCTGTCGAA CAGGAAGTGG TAGGTCTGAC TCACATCTGG AGGAGGTGCT CTCCCTGCTA GGAGCAGAGA GAGGCGAAGT 000400 000401 CAGCCCCTCC CTGGTCCACA GTCATCTTGA GGCTGAGTCC TGGCACCCTG TCCTGTCTAG TGTTGTTGGC CAGGGCCTGC 000480 000481 CCATGGGAAT AGGGCTTCTG GCTGGATGGC TTTCCTCCCA CCCCCCTAGG TGGCCCTCCC TGGACAAGCT GAAGCAGATC 000560 000561 TGCCTCCCTG ACTGTGACGT ATTTTGTGGC CCCTAGAACC TGTCCCAGGC TCGCTACTCT CACCTCAGGC ACCATGGCGA 000640 000641 GGCCCTCAAC TTTCTGGACA GAGAGATTAC TCCCTGCATT GCTGCCATTA TTACTCAGGC TGCCCAGATC AGGCAAAACT 000720 000721 CATTCTCTGA GGCCAAGTGC TCAGGCCAGC CAGAGAACAT CAGAGGTGTC TGCAGCTAGG AGAGATAGCT CGGCTCCCCT 000800 000801 GCTTACAGAG ACGGCTCCCT CAGGCCCAGA GCAGCCCTTT CTCTTGGGTT GGGGCAGGGG ACATTGGACA AAGACAGGAA 000880 000881 CATCTGCCAC CTGAGGCACT CCTACTTTGT GCTTTCCACC CTAGCCACTG ACACCATCCA GAGGTAGCTA TGGGCTGACC 000960 000961 CTTCACCATG AGGACAACCA ACCACACTTC CAACTCCACC CAAGATGAAC ACTTTGGCCT TTAGACTCCT TACCTCAATC 001040 001041 ATCACTAGGA CAGCTTACTT CTTGACCTCC TCTGAGTCAC CCAACCTCAT GGGCCAATTC TGTGGATATC AAAGAGTTAT 001120 001121 TGTCAAGTGT AAAATGATTC CTGGGATGAT CTGGGACTTG ACTATCCACT GCCTGACCAG CATCTTCCAG AGCAGGTCTC 001200 001201 CTGTACTGAG AAAGAGAATC AGCCTTCATC AGTGACCTGT GTGTCCCCAA CAAGAATCCA ACAAGACCGT GCTCCCTGC |
Predicted Small Protein
Name | NONHSAT130068_smProtein_1004:1234 |
Length | 77 |
Molecular weight | 8764.3858 |
Aromaticity | 0.0921052631579 |
Instability index | 55.8355263158 |
Isoelectric point | 10.205871582 |
Runs | 14 |
Runs residual | 0.0428009679371 |
Runs probability | 0.0450576627048 |
Amino acid sequence | MNTLAFRLLTSIITRTAYFLTSSESPNLMGQFCGYQRVIVKCKMIPGMIWDLTIHCLTSI FQSRSPVLRKRISLHQ |
Secondary structure | LLHHHHHHHHHHHHHHEEEEELLLLLLHHHHHLLLEEEEEELLLLLLHHHHHHHHHHHHH EELLLLLHHHHEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiii |