NONHSAT130074
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130074 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4843 nt |
Genomic location |
chr9+:4876530..4890193 |
Exon number |
7 |
Exons |
4876530..4877092,4879020..4879993,4880015..4880954,4882186..4882687,4883205..4883965,4886064..4886806,4889834..4890193 |
Genome context |
|
Sequence |
000001 GATAGAAATG ATAGCAAATA TATTTTGTAA ATCAATTAAT GAATTGCAAA CATGAAAACA CAACAGGGAA CTGTCTTGCT 000080
000081 GGACCAGAAA TAGCAAAGCA TTCCTAAGAG AAGGATGCAG ACAGGAAACC CAAAGTAAAT CAGTCTTGAA ACCATAAGCC 000160 000161 AGGCTGCTCC TCTGTCAAGA AACTGTCTAA GCCCAAGACT TACTCAGAAG AGTACCAATC AAGAATTACC AAACATCTGA 000240 000241 GACAATAATA CCGTGAAAGA AAGAAAAACA ACTCAGCAAA TGAAAGTCCT TCCTAAGGAG GCAGTGTAGA TGGGAGGTAG 000320 000321 AGGGCTGAGC CATACCCTCC CTTAAAGAAT CCCATGCGAC CTGGGCATGC CCACTTCCCA GTAGACTGGC TCTTCCCAGC 000400 000401 ATGGTAACCA GTGGTGGTTG TGCTGAGCAA ATGCTTCTGT GATTGGGGAG GTGCTGGCAG GGATGTAGGC ACACAAAGAT 000480 000481 GCTGTGGATA GTCTGGATTT CTTGCTAACT TGGCCTGGGG TTTTGGAGCC TTGGGTCCAG GATGCTCCTG GAAGAAGGGT 000560 000561 CAGGTGGTGT GATCCTATCC CATAGCTCCT TAATCTTCCC TATATCCTAG TACCCAGATT TTAAAAAATA GGGCTCAGGC 000640 000641 TGGGCTCTGA GGTGAGGGAA GAGGAAAGTT GGGGCTAGCC AGGGCCCTGA GGCATGGGCG GGGCGTGGTG TGACATGGTA 000720 000721 AGGGGTGGGA GTGGGCAGGA GAGACTGCCT GGGTGAGGCT TGCCTCAGAT GGAGAAGCCT GACCTGGATC CACTTGCTGC 000800 000801 CTGTAGGAGC TCAGTCGCCA AAACCTGTCT GGCCTAAAGA CAGGCACAGT TTGATTTAAT AGTTGGTACT GACCTCACTT 000880 000881 GAACATTAAA TCAATAAATG CCAACTTAAT GGAGCTGTTG CTGGGAAACT AAGGAGTATC AAATATCCAA TATCTGCACA 000960 000961 GAGGAGATTG TTTTGATCTG TTTTGTTTTT CTAAAGCTGC AACTTGCTCC TTGGTGCACT TTAGGTTATT CCTTTTTGGT 001040 001041 AGGAAAGTGG CTCCCACACT CTCCTCTCCA CCCACCCTTT GAAGAGGCTT GGAAATGCAC TCAGCAGCTG CCCCCATGAT 001120 001121 AAGCCGAAGG GCCTGTCCTG TCCAGGTTGG CAGGTCCTCC CAGCAGGCAG AGTGAGGAGT TCATGAATGA GGGAGGAGAC 001200 001201 TATGGTGTCT CAGAAGGAAA ACTCTAGAGG AAAAACACTT GAGTAACAAT GCCCAGTTCA ACCTCTGGAT CTCTCTTGCA 001280 001281 GCTTGCTGAG GCTCTATTTC CAGCTGAACT GTGTAGCTCT CAGCGTGGGT GCCTTTTATC CATCACTGGT GTCATGCCAG 001360 001361 GTCATCTTCA TCTTTTCTTA GCTAACTGAG GAGGACAGTC ATCCAAGCTG GGGTCTCCTC TCCTGTGTGT CTCTCCTAGG 001440 001441 GATGGAGTTG CCAGGCTTTG TGCTTGTTTT ACTTCTTCTC CAGCCTTTCC TTCCCCTCCC TTTCCTGTTC CCTAGGTTGG 001520 001521 TCATAGCAGA GGTTGTGTGG GAAAAAGAGG ACAATCCCCA TGTTCTTCAA CACGGCTGCC GCAAACACTA CCCAGAAACA 001600 001601 GGCTGGGAAT GGGGACTTGA ATGCCAGCTG TGGGGTGCCT GCCTTGCAGC CAGCTCTGCC AAAGCTTGTG GTTATGATTG 001680 001681 TCTCCTTTCT TCTGCTTCAC AGCCAGTCAT AAATGCCATC TTCCTTGGAT GTCTGAGTCC CTTGGAAACT GGGCTCTGAA 001760 001761 CTCGATTCCA CTGGGGTTAA CCATGGGCTA TGCTATCAGA ATTTCCACCT AGGCCTCCAG TTTCCTTAGA GCAAAAGGAA 001840 001841 AACAAATTGT GAAAGGGGAG TAGCAGAGTG GGAAGGTGGT CTAAGGACAG CTGTTCTGAC CTGAGTAATA TTACATCCCT 001920 001921 GATGGGAGGC AGCAAGTGCA GCACCTTCCA CACCTGAAAC CATCACTTAA ATAGCGCTTC ATGGTTTGGG GACTGTGACA 002000 002001 GTTTCCTAGG GGGCTATAAC AGAGTACTGT AAACTGGGTG GCTTAAAACA ACAGAAATTT ATCATCTCAC AGTTCTGGAG 002080 002081 GCCAGAAGTC CAAAATTAAG TTGCTGGCAG TTGGTTCCTT CTGAGAGTTC TGAGGGAGAA TCTTTTCCTT GCCTCTCTCT 002160 002161 TAGCTTCTGG TAATCCCAGA CATTCCTTGG CTTATTGATG CTTATAGATG TCCTTTGAAT AGTAGACGCA ATCCTCCATT 002240 002241 TTCATATGGT GTTCTCCTTG GGTCTCTTTC TTCATGTCTG TCTTCTGTTA AAGATACCAA TCATATTGAA TTAGAAGTCC 002320 002321 ACCTACTCCA GTATAACCTC ATCTTATCTA ATTAAATCTT CAACAACCCT ATTTCTAAAT AATGTTACAT TCTGAGGTTC 002400 002401 TGGGATTAGG ACTTCAACAT ATCTTTTTTT AGGGGATATA TAGTTCAACC CATAATGGAG ATCAAAGGCT GAAGGATTTT 002480 002481 ATCTTAAGGA TACAGGAGTA TCTTGTGGAA TACGAGGGAA GGCATACAGC TGGGCCTTTG GAGAGAACTT GGAAGCTATC 002560 002561 AGGACCCTGG CAGCTTCTTT CTGCCCAGAT GCTTCATTCT CTCTCTCTGC AATCCTCCTT TTTCTGCTTC TTAGTGTACC 002640 002641 CAGTGGGAAG AAAGTGGTGT CTCTACAACC TCCCGGTTTT GATCTTCTTC ATTCAAGGGA CCAGCCTAAT TTAAATGTGC 002720 002721 AAGGAAAGAA AGCTGATTGA TCCAGCTTGA GTCAGATTTC CACCCCCTAA TCAATTGTGT TCAGTGTGTG TGGGGGAAGG 002800 002801 GGGCATACAC CAGAAACAAC ATACCCAGAG GAGAAGGATC CAGTATGTGT CAGTTTTAAT CTCCTGCAAG TGTAAAAGCT 002880 002881 CCCTAGAATC ATCCTAAGGA TCATTTTATC CTAAGACCTT CATTTTGCAG ATAAATGGAA GTCTCAAAAA GTTAAAGAGT 002960 002961 TTGAGATCTC ACCCATACAG ACTGTGTAGT ATCCCTGTGT TGGGCACCAT TCTTGCACAT GGTAGGTGCT TTGTGAATAT 003040 003041 TTGTCAGGAA AACCAAAAAG AATGAAACAT AAGAGAACAA CAAGAAAAAG AATCTTTACC TTTACCCTTT CTCTTGGAGG 003120 003121 AATATTTGAC TTCTTATTCT TGTGAAATCT GGGAGATTAG GAAAAAAGCT TCTGAAATGA AGGTTATTTC AGAAGTAATT 003200 003201 TTTATGGGAG AGCTTCCAGA ATTCTTAGCC TCAGTAATGA TAATGGCTAA CATTTTGGAG CAGCTACCAT CTGCCAGGCT 003280 003281 TGGCAGTGCT AAGTGCATTG TCCCTTTTAA TCCTCGCATG AACTCTTTGG AATAGGTACT ATAGGTGCTG AGCCTGGCTC 003360 003361 TTCAGAACAA TAAGCATCCT GACAAATGAC TGGTCCCTTG AAGACAGTAC CAGGTCTTAT TCTTTGCACT TGGCCGGAGA 003440 003441 CTAGCCAGAT GCTGAGGTGT GCTCAGTAAA TGGGGATCAT GGCTGAGAGG CCCTTGCAGG AAGCTAGAAC CTCACACACT 003520 003521 TCCTCTGGTT CCAGAGCAGG GGTGTGTAGA ATCTGTAGGG AGACACTGGT GGGTGTTTTC ACAGGAGACT GTAGTGCCCA 003600 003601 AGCAGCTTTA AAAGGGCTAA GGGAATTTTC TGGGATGCTC TACGCTTATG TGGGAGCTGA CTTTGCTTTG GGCCAAAAAT 003680 003681 CTGTGGGTGG TGTTCAGATC TCCTTCTATG TTCTTGTAAA TAAAAAACCT TTGAAATGCA GCAAATGCTC ACGTAAATAT 003760 003761 ATCCCAGTCA AGATACAGAA CATTTCCATC ATGCTAGCAA GTTCCTTCCT GCCTCTTTCT GGTTAGTCTC TCCTGTCTCC 003840 003841 TGCTCAGAGG CGATGTTCTG ATTCTACCAA TTTGTTTTGT CTGATGATCA CGAGTCAGTA TTGCCTCTTC TAGGACTTTA 003920 003921 AATAAATAAA ACCATACAAT ATATCACCTT TTGTGTCTGA CTCCTTTTGC TCAAACTACT AAGTCAGCCA TGCTATTACA 004000 004001 TGTATCAATA GTTCAGTCCT TAGCCGGGCA TGGTGGTGCA CACCTGTGGT CCCAGCTACT TGGGAGGCTG AGGCAGGAGT 004080 004081 ATCACTTGAA CCCAGGAGGC GGAGGCTGCA GTGAGCTGAG ATGGGGCCAC TGCACTCCAG CCTGGGTGAT AGAGTGAGAC 004160 004161 TTGGTCTCAT GAAAAAAAAA AAAATCAGTC CTTTTTTTAA TGCTGAGTTG TATTCCATTG TATGAATATA TCATATCCTC 004240 004241 TCACCAGTTG ATGAATGTTC ATATCATTTC CAGTTTGGAG CTATTATAAA AATAACTGCT TAAGTCTGTA TTTTTTAAAC 004320 004321 AAACATCCAG CTAATTCTGA TGCAGGTGGA CCACATGTTG AGAAACACTG CTCTAACACA GAGAATTGAA GCTTATTGCC 004400 004401 CAAAGCCACA TAACCAAGAA GGCTTTGACG CCAGAGCGTG GATTCAAGAG CCCATGCTTT TCCTACTTGG ACAGTAGATG 004480 004481 TCAAGGAAGG TGGTCTGATT GAGCAACTTT ACTCTCCACA TGGATGTCTA ACGGCTATTT AATCTTCCTA GAGATGCTTC 004560 004561 CAGTTTTCCA AATTAGTTTA GATTACATGA ATCTCTAATT AGTGGAATTT ACTGTAACAA GATAAAATGG AAAAAAAGGT 004640 004641 GATGAGAGAT ATTTTGGGGC AAGTACTCTC ACTGATTCTG ACTTTTTTTC AGATTCTCCC CCTAGGATTA ATAATCTAGA 004720 004721 TTATTCTGGA TTTTTATAAC TTTTTGGGTC TTTTAAAGAT CCCTCCCTGC TTCTTTTTTT CCCACAACTA CCGCCATAAG 004800 004801 CCTGGTTGAG AAGGGGCTAT CTGAGTGAGC ACAGCCATAG GCG |
Predicted Small Protein
Name | NONHSAT130074_smProtein_3989:4156 |
Length | 56 |
Molecular weight | 6029.8513 |
Aromaticity | 0.0727272727273 |
Instability index | 71.7054545455 |
Isoelectric point | 6.95587158203 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0233272488175 |
Amino acid sequence | MLLHVSIVQSLAGHGGAHLWSQLLGRLRQEYHLNPGGGGCSELRWGHCTPAWVIE |
Secondary structure | LEEEEEHHHHHHLLLHHHHHHHHHHHHHHHEEELLLLLLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |