NONHSAT130279
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130279 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2322 nt |
Genomic location |
chr9+:15874539..16061661 |
Exon number |
10 |
Exons |
15874539..15874661,15920268..15920420,15922109..15922200,16020587..16020792,16022330..16022583,16022737..16022906,16035455..16035523,16036091..16036204,16042796..16042918,16060644..16061661 |
Genome context |
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Sequence |
000001 CAGATCTCGC TGTCATGGTC TGCGGCAAGT AGGAATGACT TCACCCTACA GCTACCCAAA CTGCACCTGG AGACCTTTGC 000080
000081 AATGGAGGGG CTCAAGGGCG GGCCAGAGGT GGTAGCATGC CAGGCTATGA TTAAAAGTTT CATGGATGTC TACCAGCTTG 000160 000161 CAAGCACTAG AATCATGACA TTAGAGAAGG AAATGACATC TCATCGAAGT CACATTGCAG CCTTGAAATC AGAACTTCAC 000240 000241 ACAGCTTGTT TACGTGAAAA TGCAAGTTTA CAATCAGATA CATTCATCAT TTCATTTAGA AGAGATGGTT CACCCTGTAG 000320 000321 TGATTCTTCA TCTATAGAAT GCGAAACATT CCCCCAGGTG ATTCTGATca gcactacgtt tgcactttgg agctatgatt 000400 000401 gagtaaaata aaagttactt gaacacaagt actgtgacat ggcaaccaag atggctactg agtgacacac aggcagggag 000480 000481 cttacacacc gtggatacct ggacgaaggg aggattcagg tcccaggtgg gatggtgccg gatagtgtga catttcatca 000560 000561 tgtgcctccg aatgGATGGT ATTATCATGC TAATGTCTGC AGAGAAGGAA GCACAGATTA GGTGACTGTG GCTACTATGA 000640 000641 GGGCCAAGGA GGCCCTCCCA CCCATCCTGT GGGATGCACC ACCTGCGCTC ACTAGGCCTA TGGAGAGGGG AGTGACTGGG 000720 000721 GCACCTGCTC ACCCCTGTAC CATGCCTGTT CTTCAGCTTC AGCTCTGGAT CGCCCAGAGA GGGACTGCTG CCTGCATCTG 000800 000801 GGTTCCTGGA CAAACATGCA GTCTACCAGC CAGCGTGTTC TCCAAAAAGA GGAAAATGAG TGTTCTGCTC CCAAGAGATC 000880 000881 ACGGAGTCCA CCTGAGTCCC ACCAGCCGAG TCATTTGTCT GCTCCTGTAG CATTTACCTT TATAGTGCAA AACCTCAGGG 000960 000961 TGCTGGCATT TCAGCCACAT CCAGGAGGTT GATGCATGGA TCTGTGGCGA ATGTCACCAC CTGTGACAGC GCTCTTATTT 001040 001041 ATGAACTGAA GAACACTCTC CATCTTGGCC CTCTTGCCAG AAAAGTTCTT TCTCCACAGA CCAACAGGAA GTTCCCTAAG 001120 001121 TACTATGAGA CCTTGTCTTT GCCTATAGCT GGCTGCATTG GACATGGATT CCTGGCCCAA GTTCATTAAA GAAGATGAGG 001200 001201 GAAAATAAAC ACACATGTAC ACGCACACCA GATAAACTGA ATGCTTCCTT CTGCTGGGGA CACGCTGTAG GTGAGCAAGT 001280 001281 GCACCAAGGA CAAGGCGGCC ACTGATGAAA AGGAAGGGAA AAGAGACTTC ATTTCCATAC CCACTAACCA TGCCAACAGA 001360 001361 AGGCTTTGTG AAGAAGGAAG TAAAAGCTAT CGGTAGGAGT TAGAAAAAAA CATTTctagt tacaagaaca gcagaaaaag 001440 001441 acctgaactt cagagtggac cacaaatgaa tatgaattaa taacacagat ctcttttcaa aagccaacac aaaatgagga 001520 001521 tgtgttTTTT GCAAAAGCAG TTGTTCTTGC CACTGGGCTT ATGCTTGTCA TTCTTTCATG TGTCACAGCC AGACCTAGGA 001600 001601 AATTCCCTGG AAAGTCCCCT CCATCACACA CCTGCAGTTT TTCCATTTGA GTGTAATTCT GTTGGACCTT GAAAGACTTT 001680 001681 TTGATCTTTG GGACGCTCTT ATCACCAAAT GTATCTTTCT GCAGGAAGAA GACagaagaa aggggtggac tatgagatgg 001760 001761 gagcctgggt cccaatttca gttcaaccat taccaaccag gtggctttag gcaagtctgg tcatttcctt tgcctcagtg 001840 001841 gctttctata aaatgGAATT CTATAGGGAT GATGAAAGCG AAAACGTTAG CCACTATGCT TGCTAGTGCT CAAGAAATGA 001920 001921 TTCCTTCCTG CCTGCCTgcc tcagttttcc atctgtaaac aaggattcaa ctagaacatc tttgaggttc cttgagctct 002000 002001 aacactctgt gattctgtTG GCAGCACCTT AAGAAATTTA CAACAAACAC TCCATTGAGT CTTAATCTAT TAGATCCCAT 002080 002081 TCAGTTCTAA TAGTGTTGtg attttgactt tgtagcctca tgtttatttt ctctcttcct gattttttat ttatatattc 002160 002161 tatttaatag tttttgcttt ttcaagttgt caccagttct ttgtagaata agaaaaaagt ataactaaCT GGAGGAAAGA 002240 002241 ATGCATTCAC AGAAAGCCAA GGAATGATAA CACTAATGCT AATACAATAC TACTGCTaat aaaaataact gcctttattg 002320 002321 aa |
Predicted Small Protein
Name | NONHSAT130279_smProtein_1751:1957 |
Length | 69 |
Molecular weight | 7842.1105 |
Aromaticity | 0.147058823529 |
Instability index | 62.4338235294 |
Isoelectric point | 9.62481689453 |
Runs | 8 |
Runs residual | 0.022853736089 |
Runs probability | 0.033441529765 |
Amino acid sequence | MRWEPGSQFQFNHYQPGGFRQVWSFPLPQWLSIKWNSIGMMKAKTLATMLASAQEMIPSC LPASVFHL |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEELLLLLLLEEEEHHHHHHHHHHHHHHHHHHHHHHHHHL LLLLLEEL |
PRMN | - |
PiMo | - |