NONHSAT130288
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1705 nt |
Genomic location |
chr9-:16424469..16426173 |
Exon number |
1 |
Exons |
16424469..16426173 |
Genome context |
|
Sequence |
000001 AGATTTATTC TCAGTAAGTC CTTAAAAGAT GCCAGGGCTC ATGGCTTTGC TTTTTCTTAC CCAACAATAG TAGTAAACTG 000080
000081 AGCACCATAT GAGCTGCTTG ATTGAGAACA CTTCCAAATG CTGTGAAAAC ATAATCCTGT TCACAGTGTA ACACTCATCT 000160 000161 CACATTACAG CGCAACAGGT ACCTATTGAA TAATCAGCAC CCTTGAGAAG CCTCGATGTC TCAGATACAA CTCAAAAGTA 000240 000241 AAATGGTTAG GGAATGGGGC TGCTGGATAT CAATTCTACA CTTAACCTGT GCATCCAGCT ACACATTTTC CATCTACCAA 000320 000321 TCTGCCTTCC CAAATGCCAT CACTACATTA ACATTTTTTA TGCATTCCAC AGCAATGACA AATTGTTTTC TAACTGTAGG 000400 000401 GCCAGATTTA GTATGCGAAA GACATGTTTG CCTCTGCCAA CAAACCAATA ATTCTCACTA ACGTCTTCAG AGTTACAACT 000480 000481 TTTATAAAGT TGCAAAGTGG AGTAAACAAA CCATCTGTTT GGCTTTTCCA TATATGTCAT GCTTTCTTAT TAGCATATTA 000560 000561 CGATTCATTT AGTAAACAAA TTTGGTGATT TCGTTCACGT CAAAGTTAGA TCGGAAGCTT GAAGATGATT AACATTCCTG 000640 000641 GGACAAGCAC ATTAATACAT TGCTTCCCCT GCAAAGTTAA ATGGCTTCTC AGGAGAATCG CCCCTTGTTG ACAAGATGAG 000720 000721 ACTGTCAATT TTGTCTGCCT GCCACATTAG GGGCCATACG GGGATGGCAG GCTCTGAGAG AGGGGAGTCG TGTAGGCAGC 000800 000801 ATAATTCACT GTGAATTGAG AAAAGAAGTC TAATTCTGAT AAATGGTCGA CCCCAATACA TCCTACCTGT TATTACAACA 000880 000881 GACGTGCCGT ATCTGTGCAG TAAATTAGCT AAACCCCTAA AGAGTTTGGT AGGAGCTTAT CTTCAAGTGA ATAATTTGAA 000960 000961 TGTAGAGGAA ACTGTCTGCG TGACTAGTAT GGATGATTTG TTTTATATTG AAAGGGGTTG AAATGACTGA GTTTCATACT 001040 001041 TTTAATTTGC AAGAATTTGC TTAGATTTTG TTTCTTGCAT TTAATATGTA CTTCCTTACA TTTGGGGCTT TTTGAGTGTT 001120 001121 ACCCACTAGA ATTTCACATT GAATTTTCTT CCTGAGCTAG GGGATGGTTT TCAGATCTTT TGGACAGAGT CTTTAAATAA 001200 001201 TAACCTGTAG AACAACTACT AATTTTACAG AAAGGTATAG TGTCAAAAGT ATCATTTTGT GCACAGAGCC ATAAGCATCC 001280 001281 TATCGTTAAT AAATGATAAT ACAAAAATGT TGAGGTAAGT GTAATAGATA GTGTTGTAGC AATCCAGATA AGAAAAGGAC 001360 001361 TAATGAAGGC AGAAGTTTTA ATTTTTCATT TCTGTGGATT TTGATAGCAG GTTTACATTT CTACTCAAAA GTATTGTTGA 001440 001441 CTCAGTAGTC CTACAATGTA CTTAACCCTA GCATCTAGAC TTACCCAGAT TGGATATAAA TTTATCTCTC TCTCTCCCAT 001520 001521 TCTCCCCATA TACATATATG TACACACATA CATACAGACA AATAGGCATG CATATGGTAT GTATATGTTA TTGTTACGCT 001600 001601 ATGTATATGT TGTTATGATC ATTCTGTACA ATATCATTTG AGAATTTGTG AATGTGTGTG TTGAACGGCA GAGTTGAGCT 001680 001681 GGAAAATAAA GGCAAAAACT AATCC |
Predicted Small Protein
Name | NONHSAT130288_smProtein_215:460 |
Length | 82 |
Molecular weight | 9224.6275 |
Aromaticity | 0.111111111111 |
Instability index | 41.8728395062 |
Isoelectric point | 7.64459228516 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0647647647649 |
Amino acid sequence | MSQIQLKSKMVREWGCWISILHLTCASSYTFSIYQSAFPNAITTLTFFMHSTAMTNCFLT VGPDLVCERHVCLCQQTNNSH |
Secondary structure | LLHHHLHHHHHHHLLLEEEEEEEELLLLLEEEEELLLLLLHHHHHHHHHHHHHLLLLEEE LLLLLEEEEEEEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooo ooooooooooooooooooooo |