NONHSAT130479
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130479 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1427 nt |
Genomic location |
chr9+:23819671..23839912 |
Exon number |
5 |
Exons |
23819671..23820272,23821436..23821596,23822182..23822313,23837274..23837406,23839514..23839912 |
Genome context |
|
Sequence |
000001 TGGCAGCACA AAGTTACCCA AATAACAGGC AACAAGGGGC TGGTTTTAAC CACACAAAAA TAAAAATACT CTCTCAAAAA 000080
000081 GGAAAATTAC AAAGGAGGAA TCACAGAAAA TTTAATGTAA CATGTTTCTT CATATTCTAA TTTTTCCTAC CCCATTCTGG 000160 000161 CCTTTATCTT CCAGATGTTT TCTTCCTCTT CTTTCTCTCC CCATAGTTTG CAAGCGAACT TCCCGTAAGT ATATCCTCCC 000240 000241 CACAACCTTA AGTGTTGTTA CCTTAGCATC CCTACAAACC TCCTATAAAG AAGGCCCCTA CCACAAATGC AGTAACATTC 000320 000321 GGGTCCACTC AGCAATACAG TCACCATTTA TATATACCCA AAGGTTACTA AGACAAGGTA GATGCAGGAC AGCTTTTCCA 000400 000401 CCCGCTCACC AAAATGGAAA CTCCAGGTCA GCTTCCACAA GAAATGGGAA ATTCAAGCGA CTCTGGCGAA ACGATTCTTG 000480 000481 AGAAAACTCT TCAAGGGCAA CAAAACAATA TTTCAAACAA ACAGATTTTA CTTGAGGGAA TGGGGACATT ACACAGCAAT 000560 000561 TGATATTCGA ATGGTTTTAA ATGGACTGAT TCGCCGTAAG TTACCTCCGC CGCCCCCACC AGTGTTCCCG CCCAGAGTTC 000640 000641 GGACTAGGGC GCACCACCCC TACCCTGCTA GACGCAGCGG GGGCGCGCAC AGACCTTAGC CTCGGCGTCC AAAATGGACC 000720 000721 AGGGGCAAGG CGCGGACGCC GTCCCCGCCC CCACGCCCCC AGCTGTATTT ATAAATATAT ATAAGTATAC ACACATATGT 000800 000801 GTGTCTCTTT TAAAAATTCT CTTTTTCCCC CTACTTCGCA GCCAAGGGGT CCTGTCCCTG GACAGAAAAT AAAGGCTTAG 000880 000881 CCCCCTGCTG CCCCTAGGGC TTTAAAAACA CTGCTGGGAA AGTACGCACT GTGGCACTAA GCAAAGATCT CTAGATGTGG 000960 000961 AGCAAGGAGG CATGAGTCCT AGTATTATTT ATCCCGCTAA CTAGCTGATT CTCTTCAGAA AGTCACTCCA TGAGTCATCA 001040 001041 CTATTCTAAA TATTGGTGTC AGTCCCAAAT CAACAAGAAC AAATCCTAAA ATTGCACAGT CCACACTGGA AACTGCATTT 001120 001121 ATCAGCAATG ATTTTACACA ATTATTAATT TTTTATAAGA AACTGACCTG AAAGGAAAAT CATGCTCTTC TGTCTCATAT 001200 001201 CTGAATCATT TTTGCAATGA AATTAATAGG TAGTTTATAG CAGCTCCTTG AGTTTCTGAA TTAAAAACTG AGGTAGAAAG 001280 001281 TCATCTGTGA CCTTTATATA AAGAAAGCAA AACATTTTAC CTATAATTTT AAAGTATCTT TTACCTATTA GACCATGTCT 001360 001361 TCTTTCACAT GAATATAGTG GCTCTCTTTT AAGGCCATAA AATGAAACAA TCCCTGTATG CTCCAGA |
Predicted Small Protein
Name | NONHSAT130479_smProtein_713:871 |
Length | 53 |
Molecular weight | 5743.7408 |
Aromaticity | 0.0961538461538 |
Instability index | 57.4288461538 |
Isoelectric point | 9.03424072266 |
Runs | 10 |
Runs residual | 0.041938287701 |
Runs probability | 0.0370075958311 |
Amino acid sequence | MDQGQGADAVPAPTPPAVFINIYKYTHICVSLLKILFFPLLRSQGVLSLDRK |
Secondary structure | LLLLLLLLLLLLLLLLEEEEEEHHHHLHHHHHHHHHLLHHHLLLLLEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |