NONHSAT130480

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130480

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1427 nt

Genomic location

chr9+:23829668..23849912

Exon number

5

Exons

23829668..23830272,23831436..23831596,23832182..23832313,23847274..23847406,23849514..23849912

Genome context

Sequence
000001 TATGTGGACT TGCCTTTCAC CGAAAGGGGG GAAAAGTTGT GAAAATTGAC ACCAGTGTGA ATTTATACCG TGGCAACCAC 000080
000081 GCAAGAGAAA GAGGCAGGAA TTAGCACCAT GGACAGAGAC GAGCAGCCCT CAAATTAAGA TTTGCAAAGC TTGAGACGGT 000160
000161 GTTTTCTGTC CCTTTCTGTG AGACACGGAA ACTGCGTGTC TTGGGAATGT TTTATTCCAC GGGACTTTGC GGAAAAGACT 000240
000241 GTCCTACTCC ACAGAAACTC ATTTATTTTG AATTAGGCTG GCATTTCTTA GGACTCAGCC ATCATGACAA ACTGTCAGGA 000320
000321 GACTTAGAGC CCCGAACTCG CTGTGCACCT TCCACTGTCC TGTTTTACAT ACACTCCCTT GCCGGCGTGA GCTCGCCTTT 000400
000401 CTTCAGAGTG TTCATGAAAA ATAAATGCAA ATCCAGGTAG TCTTCGAAAA GTCTGGTAAA CCTGCTCCAG AGTTTTTAAT 000480
000481 CCTCGAATAT CCCAGCTGGA ATTGCAGCAA AAATGCCTGC CTGCTCACCC TTGCTCCCTC CCCCCGTTCT TCTCCCTGCT 000560
000561 CCCTCCACCC CCTAGCAAAG GGGTAAAGCC TTTTACTGGA AGAGCAAGTG CCGGCACCGG GCCACGGTGA CAAAGGCGGA 000640
000641 GTTTGTATCA GAAGAAGACT GAGGCCCGGG GAGACACAGC GGCTAGAGAA ACAGCTGTCT TATCAGCCCG CTGCAGAGAT 000720
000721 GGAGATGGCT TGAGAGGTCC TCAACAGATA ATCACTTGAA TAGTGATAGG GCCACGGGAG AGATTCCAGA ATGATTTTTA 000800
000801 GAATAGCCTA AGAAGTTGTC ATCCACAGGA AAGAATCTAC ATAGCTACTT ACAGGAATAA CAGTTATTTT TCAACTCCCT 000880
000881 CCTCCCTTTA CCCAGGTACA TTGCATGCCC TGGATATGGT ACAAAGGACA AAACCTGCAA TGTACCCATT AGATAACCTG 000960
000961 GCTGCCATCC ACCGCCACTT CCTACATCTC ACTTTTCTCT TTTATGCATG AATACTTTTT CACTTAAAGA TTTTGATCAG 001040
001041 GAGTGACCCG GCTAATGTGC CGAGTTCAGG AAGTCAGAGC TGCAAGGTTC TTTTGAAACC AGACAATAAC GTAGTTCCCT 001120
001121 TCGCCTCCCT TCCCTGCACC TCTCCCCTGC TTACTGCCAA CTCCCACCCA CTTTAAATGC ATCAAGCCTA TTACCATCCC 001200
001201 AAGAGTATCA AACATATAAA TACAGAACTT GTCCACTGAC CATAGTAGAG AGAAAAACAA AATTAGCACT ACTGGTTTGT 001280
001281 ACGGGTTTCT TTTTGTTGTT GTTTAACGAC CCCCTCCTCC CAGCCCCCAA CCCTTTGTGT GTGAGGATTC CCCTTCAAAC 001360
001361 CACCCACAGA CCGAGCAGAC GAGAAGAAAT GGTAATTTTC GGTTTAAAAG TTCACTTACC ACGGCAA
[back to top]

Predicted Small Protein

Name NONHSAT130480_smProtein_206:439
Length 78
Molecular weight 8800.181
Aromaticity 0.142857142857
Instability index 45.5716883117
Isoelectric point 9.26690673828
Runs 12
Runs residual 0.0197628458498
Runs probability 0.0375816993465
Amino acid sequence MFYSTGLCGKDCPTPQKLIYFELGWHFLGLSHHDKLSGDLEPRTRCAPSTVLFYIHSLAG
VSSPFFRVFMKNKCKSR
Secondary structure LEELLLLLLLLLLLLLLEEEEELLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEEHHHLL
LLLLEEEEEEEELLLLL
PRMN -
PiMo -