NONHSAT130480
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130480 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1427 nt |
Genomic location |
chr9+:23829668..23849912 |
Exon number |
5 |
Exons |
23829668..23830272,23831436..23831596,23832182..23832313,23847274..23847406,23849514..23849912 |
Genome context |
|
Sequence |
000001 TATGTGGACT TGCCTTTCAC CGAAAGGGGG GAAAAGTTGT GAAAATTGAC ACCAGTGTGA ATTTATACCG TGGCAACCAC 000080
000081 GCAAGAGAAA GAGGCAGGAA TTAGCACCAT GGACAGAGAC GAGCAGCCCT CAAATTAAGA TTTGCAAAGC TTGAGACGGT 000160 000161 GTTTTCTGTC CCTTTCTGTG AGACACGGAA ACTGCGTGTC TTGGGAATGT TTTATTCCAC GGGACTTTGC GGAAAAGACT 000240 000241 GTCCTACTCC ACAGAAACTC ATTTATTTTG AATTAGGCTG GCATTTCTTA GGACTCAGCC ATCATGACAA ACTGTCAGGA 000320 000321 GACTTAGAGC CCCGAACTCG CTGTGCACCT TCCACTGTCC TGTTTTACAT ACACTCCCTT GCCGGCGTGA GCTCGCCTTT 000400 000401 CTTCAGAGTG TTCATGAAAA ATAAATGCAA ATCCAGGTAG TCTTCGAAAA GTCTGGTAAA CCTGCTCCAG AGTTTTTAAT 000480 000481 CCTCGAATAT CCCAGCTGGA ATTGCAGCAA AAATGCCTGC CTGCTCACCC TTGCTCCCTC CCCCCGTTCT TCTCCCTGCT 000560 000561 CCCTCCACCC CCTAGCAAAG GGGTAAAGCC TTTTACTGGA AGAGCAAGTG CCGGCACCGG GCCACGGTGA CAAAGGCGGA 000640 000641 GTTTGTATCA GAAGAAGACT GAGGCCCGGG GAGACACAGC GGCTAGAGAA ACAGCTGTCT TATCAGCCCG CTGCAGAGAT 000720 000721 GGAGATGGCT TGAGAGGTCC TCAACAGATA ATCACTTGAA TAGTGATAGG GCCACGGGAG AGATTCCAGA ATGATTTTTA 000800 000801 GAATAGCCTA AGAAGTTGTC ATCCACAGGA AAGAATCTAC ATAGCTACTT ACAGGAATAA CAGTTATTTT TCAACTCCCT 000880 000881 CCTCCCTTTA CCCAGGTACA TTGCATGCCC TGGATATGGT ACAAAGGACA AAACCTGCAA TGTACCCATT AGATAACCTG 000960 000961 GCTGCCATCC ACCGCCACTT CCTACATCTC ACTTTTCTCT TTTATGCATG AATACTTTTT CACTTAAAGA TTTTGATCAG 001040 001041 GAGTGACCCG GCTAATGTGC CGAGTTCAGG AAGTCAGAGC TGCAAGGTTC TTTTGAAACC AGACAATAAC GTAGTTCCCT 001120 001121 TCGCCTCCCT TCCCTGCACC TCTCCCCTGC TTACTGCCAA CTCCCACCCA CTTTAAATGC ATCAAGCCTA TTACCATCCC 001200 001201 AAGAGTATCA AACATATAAA TACAGAACTT GTCCACTGAC CATAGTAGAG AGAAAAACAA AATTAGCACT ACTGGTTTGT 001280 001281 ACGGGTTTCT TTTTGTTGTT GTTTAACGAC CCCCTCCTCC CAGCCCCCAA CCCTTTGTGT GTGAGGATTC CCCTTCAAAC 001360 001361 CACCCACAGA CCGAGCAGAC GAGAAGAAAT GGTAATTTTC GGTTTAAAAG TTCACTTACC ACGGCAA |
Predicted Small Protein
Name | NONHSAT130480_smProtein_206:439 |
Length | 78 |
Molecular weight | 8800.181 |
Aromaticity | 0.142857142857 |
Instability index | 45.5716883117 |
Isoelectric point | 9.26690673828 |
Runs | 12 |
Runs residual | 0.0197628458498 |
Runs probability | 0.0375816993465 |
Amino acid sequence | MFYSTGLCGKDCPTPQKLIYFELGWHFLGLSHHDKLSGDLEPRTRCAPSTVLFYIHSLAG VSSPFFRVFMKNKCKSR |
Secondary structure | LEELLLLLLLLLLLLLLEEEEELLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEEHHHLL LLLLEEEEEEEELLLLL |
PRMN | - |
PiMo | - |