NONHSAT130585
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130585 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1932 nt |
Genomic location |
chr9-:26642695..26644593 |
Exon number |
1 |
Exons |
26642695..26644593 |
Genome context |
|
Sequence |
000001 AGCTTTGCCC AGGCAGCTTC AGAGGACAGT TGGATATTTG TAATATTGGA GGCACGGTCA AGAGGAACAT GGGCTATTTT 000080
000081 AGGCTAAAGT CATTTTACCT TTAAAATTCA AGTAGAGGCA ATAAATAAGA TTTGTGTGGT AGGGAGAAGA GTGTATTTCT 000160 000161 TATTGGTGGT ACACCCTGTT TGCTGAAGTC TAGCAAAACT AGTTGATTAT TCAACTCATC CCTGAACTTT CTATAGATAA 000240 000241 AATCAAGATG GACAAGATTA AAGAGAGAAA AAGGACTCAA TGGAGTTGTG AAGGAAGAAG CTGTTGGACT TTGAGATGGG 000320 000321 CATTTGTGGA GCCTCTGTAG AGGCTGATAA TCTCTCCCAT CACCCAAACC AGCTCTTTTT CCCAGTTACT CCATATCTGT 000400 000401 CAGTGCTTGC ACCTGTCCCC TAGGTGAGAA ATTTGAGATG ATTCTTTATC GATTTCCGCT ATCATCTTAA ATATGGAATA 000480 000481 AATCAAGGCC TATAATTCTG TTCCATTTGT AATGTCTCTC AAATTTTCCT TCATCTCCAC TTCTACTGCT GTCATCCTTT 000560 000561 CCCAGTCTTC AGCATACGTC AGCAATTCTG GAGTAGCTTC AGACTGCACG TTCTCCTTCT CCAATTTCTC CCCTACTGTT 000640 000641 TCCAGCTTAC TGTTTCCCAA ATGCCACTTA ACTGTTTCTC TCAGAGAACC TGAAGCTACT GCAAATAACC ACAGACTATG 000720 000721 AGCCTTTTCA AAACTGGGGC TTTATCATAC TCACTTTTGT AGCTCCAGTG TTTAGGAAAG TGGCTGACAC CTAACCCAAT 000800 000801 TTTAGCCTTG CAACAACTCC ATGAAGTTTT TGAATGGGAA ATTGAGGCTC AGGGAGGGAA AGTGACTGCC AAAGCCTGCA 000880 000881 TAGCTAGTAA GCATTAGAGC AAGACTCTGT CATAGGCAGG TCTTTTTTTT TCCTAAACCA CATGAACTCA GCTGCACCTT 000960 000961 GCTACCTCCA CTGTCAGGAA TTGGAGACTT TCTCAATCAA ATTCACTTAT TGTACCTCTA GCACTTTTCT GCAATTAGTG 001040 001041 CTATGTCAAG TGGTATATCA CCTGCTGCAA GAAATATATT CGAAAATTTG CCAGTTGAAT GTCAGAGAAG AGCTGATAAA 001120 001121 GACCAAAGGA ATTGAAGGTG GACCTTAAGC AGGGCTTGCA GGTTGAAATA GGATTTGGTC AGCAGGATAC CAGGGTGGAG 001200 001201 GGCATTCCAT ATCATGGAGG CAGACAGCAA AAGCATTGAG ACAGAAATGA AACAATTTTT GCGTAAATGA TAAAGAAATT 001280 001281 AACTTATCTG GGGAAATAGT TCATGTAGTC TTTCTGGAAA TAATCTTCCT TTAAAGTAAT GGTTTCACTA GTGCCCTGGA 001360 001361 AATAAACCCC GTAATTTCAT GGATTTAGGT GCTAAGGACT GGAGAGAAAC AGTCTTCTTT CTGTATGGCA AGAGCAGAGA 001440 001441 GAAGAAAGCT CACTTGACTG TGGCATTCCC ACACTCAGGA TTTTGAAATG AGCCTGGATT TTGTGAGGAT TCCCATGGCA 001520 001521 AATCCTAGAG TACAGGAACC AGATTTGTAT CTGAACACGG CTTCAGTTTT CATGATAACT TTAACCTTCA GAAACATTTT 001600 001601 CACCCCAACT TTAGAAAAGA AGCATAAGAT GAATTGGCGA AGGGTTTGAA CATATTATTG CAAAGAGAAC ATTTTTTACT 001680 001681 GGCCAATGAA CTTCGTAGCC AAAAACATGT TGTTGAAAGG GGCCTGGCTG ATGGCAAACA GTAAAATGAG ACATTTGGAA 001760 001761 TCATAAACCC CCAAATAATT ATCACCTGTA AATCAATGTC ATAAAATTAA ATAGAGGCAT TTAAAAAGTA TCAGGCAAGT 001840 001841 TAAAAAATGG CAAAGAACAG AAAATTGCAT TTCAGTAAAT AAAGTAAATT TATTAAAAAA AAAAAAAAAA AAAAAAAAAA 001920 001921 AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT130585_smProtein_941:1147 |
Length | 69 |
Molecular weight | 7775.0052 |
Aromaticity | 0.102941176471 |
Instability index | 44.0161764706 |
Isoelectric point | 6.02801513672 |
Runs | 5 |
Runs residual | 0.0669713831479 |
Runs probability | 0.0741211800035 |
Amino acid sequence | MNSAAPCYLHCQELETFSIKFTYCTSSTFLQLVLCQVVYHLLQEIYSKICQLNVREELIK TKGIEGGP |
Secondary structure | LLLLLLLLLLLEEEEEEEEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii iiiiiiii |