NONHSAT130717

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130717

Source

NONCODE4.0

Same with

,

Classification

sense

Length

576 nt

Genomic location

chr9+:33277791..33280949

Exon number

2

Exons

33277791..33278223,33280807..33280949

Genome context

Sequence
000001 GCTTTCCCGC TCTCTCCATG GTCTATTTTT GCCTAGAACC TTTCATTTTT TTTCCACTTA TTTCTTTATT TTTTAATTTC 000080
000081 CCATCTTCAA TTGCCCCTGA TAAGTCTCTA CCTGCTATTG TCATTCCTCT TGGCCACTTC CAACTCATTT TACCACAGAC 000160
000161 TTATTTTTGG AGTCTGATTT CACGTAATGG TCACACAGCA TACAACAATC TCATGCCCTC TTCACTGCCT TCTTTCAAGT 000240
000241 CCATCGATAA ATGAGAGAAA TTATTAGCTG CCAGTTTTCT TGGTTACATT TTTTTTAAAT GTTGACTGTT TCAATCTCAG 000320
000321 AGTTGGATGC ACTAGGTGAT GAGCTTCTGG CTGATGAAGA CAGTTCTTAT TTGGATGAGG CAGCATCTGC ACCTGCAATT 000400
000401 CCAGAAGGTG TTCCCACTGA TACAAAAAAC AAGGATGGAG TTCTGGTGGA TGAATTTGGA TTGCCACAGA TCCCTGCTTC 000480
000481 ATAGATTTGC ATCATTCAAG CATATCTTGT AAAACAAACA CATATTATGG GACTAGGAAA TATTTATCTT TCCAAATTTG 000560
000561 CCATAACAGA TTTAGG
[back to top]

Predicted Small Protein

Name NONHSAT130717_smProtein_17:253
Length 79
Molecular weight 8927.4092
Aromaticity 0.179487179487
Instability index 47.8884615385
Isoelectric point 7.92779541016
Runs 13
Runs residual 0.0329893683552
Runs probability 0.0284809696574
Amino acid sequence MVYFCLEPFIFFPLISLFFNFPSSIAPDKSLPAIVIPLGHFQLILPQTYFWSLISRNGHT
AYNNLMPSSLPSFKSIDK
Secondary structure LEEEELLLEEELLHHHHLLLLLLLLLLLLLLLEEEELLLLLEEELLHHHHHHHHHLLLLL
LLLLLLLLLLLLLLLLLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
LLLLLLLLLLLLLLLLLL
PiMo oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo
oooooooooooooooooo