NONHSAT130717
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130717 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
576 nt |
Genomic location |
chr9+:33277791..33280949 |
Exon number |
2 |
Exons |
33277791..33278223,33280807..33280949 |
Genome context |
|
Sequence |
000001 GCTTTCCCGC TCTCTCCATG GTCTATTTTT GCCTAGAACC TTTCATTTTT TTTCCACTTA TTTCTTTATT TTTTAATTTC 000080
000081 CCATCTTCAA TTGCCCCTGA TAAGTCTCTA CCTGCTATTG TCATTCCTCT TGGCCACTTC CAACTCATTT TACCACAGAC 000160 000161 TTATTTTTGG AGTCTGATTT CACGTAATGG TCACACAGCA TACAACAATC TCATGCCCTC TTCACTGCCT TCTTTCAAGT 000240 000241 CCATCGATAA ATGAGAGAAA TTATTAGCTG CCAGTTTTCT TGGTTACATT TTTTTTAAAT GTTGACTGTT TCAATCTCAG 000320 000321 AGTTGGATGC ACTAGGTGAT GAGCTTCTGG CTGATGAAGA CAGTTCTTAT TTGGATGAGG CAGCATCTGC ACCTGCAATT 000400 000401 CCAGAAGGTG TTCCCACTGA TACAAAAAAC AAGGATGGAG TTCTGGTGGA TGAATTTGGA TTGCCACAGA TCCCTGCTTC 000480 000481 ATAGATTTGC ATCATTCAAG CATATCTTGT AAAACAAACA CATATTATGG GACTAGGAAA TATTTATCTT TCCAAATTTG 000560 000561 CCATAACAGA TTTAGG |
Predicted Small Protein
Name | NONHSAT130717_smProtein_17:253 |
Length | 79 |
Molecular weight | 8927.4092 |
Aromaticity | 0.179487179487 |
Instability index | 47.8884615385 |
Isoelectric point | 7.92779541016 |
Runs | 13 |
Runs residual | 0.0329893683552 |
Runs probability | 0.0284809696574 |
Amino acid sequence | MVYFCLEPFIFFPLISLFFNFPSSIAPDKSLPAIVIPLGHFQLILPQTYFWSLISRNGHT AYNNLMPSSLPSFKSIDK |
Secondary structure | LEEEELLLEEELLHHHHLLLLLLLLLLLLLLLEEEELLLLLEEELLHHHHHHHHHLLLLL LLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLLLLLLLLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo oooooooooooooooooo |