NONHSAT130848
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130848 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2086 nt |
Genomic location |
chr9+:34383688..34396332 |
Exon number |
2 |
Exons |
34383688..34384654,34395214..34396332 |
Genome context |
|
Sequence |
000001 ATCTGTGTGA CCCTGACTGA ATTAATTAAT TTTGATGTGT CTCAGTTTCT CCAACTTTAA AATGGGGATA ATAGTACCAT 000080
000081 TTACTTCACA GGGTTGCTGT GAGGTTTAAG TGAGTTAGTA TATGTAAGAC ATTTAGAATG ATGCTTGGCA CATAAAAAAC 000160 000161 TATTATGATT ATTCTACTGT TATCCTTGCC TCACCTTTGA AATCCTATAA TCCAGCCTTG ACATAGCACC TGTGGTACTT 000240 000241 TTCACAAATG AAAATTTGAC CAAGACACCC TCCTACTTAA AACCCTATAG GGTTTGTCTG CCTTAGCCCC CAGTCACCTA 000320 000321 AGCCTGTCCT ACAAGGCCCT CCATGATCCA ACAGTCTGAA AGAATACATA TGCGAGACGG TGTGGAGGAA GCCCTAGCGA 000400 000401 AGAGCAGCTG TCTGAGGGGA GGGGTGCAGT GCTGGGATTT GGAGTTCGGG GATGGCAGTT TGCACATACT GAAACTGAGG 000480 000481 TGTTTGGGGA CATCCAGATC AAGATGACTA TAAGCATATG AAGAAGAGTG GAATTCTGAT GAGAGGACAA ATCTGGAAAT 000560 000561 TAGGATTTGA AGCTGTCAGT AATTAAAGGC TTGTGTTAAA TCAAATGGCC TTGGAGGAGG AGCAAGGGGA GAAGAGGGTG 000640 000641 CAGGATAACA CCCTGAGGAA CCCCATGTTT CCACAGTGGA TGCACAGGAA AGGGAGGCAT CAGAGAAGCT GAGGAGGAAG 000720 000721 TTGTTTCAAG AAGTAGAGTG TGGTCATAGC CTGTGTGCTG GAGGATTAAC ATACAAAACA ACATCAACAA CAAAACGAGT 000800 000801 AGAGAGTGGT CAGAAGAGTG CAATTCATTG GTCTAGGAGG GTAAAGGTCT CAGAGGGTAA AGACTGCAGA GTCCTGTGGA 000880 000881 TTTGGTAATC AGAGCCATGC AAGAGCAATT TATTGTTTCA TCATAGGAGA TGCACATTCC CAACTTCCAT TGGGAATTCT 000960 000961 CAGTCCATTC AACCTCCCAA AGTGCTTGGA TTACTGGCCT GAGACACCAT GCCTGGCTTT TCCTTCATTC TTAATACCAC 001040 001041 TGCTATCTGA CTTTCACTCC TCGCCATTCA TTGAAGCTGT CTGGCTAAGT TACCAAGAGT TACTACATCC GAGAGATTTC 001120 001121 TCTGTCACTA ACACTTGACA CTGATCTTTG TCTAATAATG CTGTCTTTAT TGGTTTATCT TTGATTTTCC TCCTAGTTCT 001200 001201 CTGGCAATAA TTCTCTGTCT TCTTTTATGG CTTTTTTTCC TTTACCTACC CTTAAATATT TATATTCTCC AAAGTTATGT 001280 001281 CCTTGGCCAT TTTCTCTCTC TTCTTTGGCA ATTTCATCTC TTCCTATGAC TTCACCCACC ATTTATATGA TGATGACTTC 001360 001361 AAGATCTCTA TCTATAACCC AGACCTCTTT CCTTTGCTTC AGATAAGTAT ATCTAACTAC TTGCCAAACA TCTTTTCCTG 001440 001441 GATATCCTCA AATATTTTTG TTCTCAAATG AACTCCAAAT CTCTAATCTG TTATTCCAAA CCTCAGTTGA TAGCATTAGC 001520 001521 ATTCCTCCAG CTGCCACAGC CAAAAACTCA AGGGTCACCC TAATCTCTCC CCTTACCATC CATATGGTGA CCAAAATCTG 001600 001601 TTCATCTACT TTTTAAAATT CCCTTCTATT GAGTATGGAG TCAGGCACTC TCATATTTTG CTTGTGGAAA TGTAAATTGT 001680 001681 TACAACCCTT ACTTATTATG GCAATTTGAG GTATATAGCA AAAGTTTTAA AAATGTGTAT ATCTTTTCTC CTAACAATTT 001760 001761 CATGTCTAGT AATTTATCCT AAGGGAATAA TTGGAAATGT GTACAAAGAT ACATGTATAA GAATGATTAT ACTAGCAAAA 001840 001841 TTTTATAAAG TACCTAAATT TTCAATAAGA TTCCTTAAAT ACACCATTTT GTAATAAATT TTATTTATTT TTATAATAAA 001920 001921 CAATATTTGC TTCCTGAAAG GGCATACGAT AATATATTAA CAATGGTAAT TTTAGGTAGT AGGATTTTAG ACCTTTTTTC 002000 002001 TTTGTGCTTC TCTGAGTTAT CTGCATTTTC TACATTCAGC GTATATTTAT TTTGGAGTTA GACAAAATAA ATTATTTTAA 002080 002081 AAATTC |
Predicted Small Protein
Name | NONHSAT130848_smProtein_1226:1405 |
Length | 60 |
Molecular weight | 6733.0519 |
Aromaticity | 0.152542372881 |
Instability index | 59.9525423729 |
Isoelectric point | 9.59112548828 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0913168070031 |
Amino acid sequence | MAFFPLPTLKYLYSPKLCPWPFSLSSLAISSLPMTSPTIYMMMTSRSLSITQTSFLCFR |
Secondary structure | LLLLLLLLLLEEELLLLLLLLLLLHHHHHLLLLLLLLEEEEEEELLLLLEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |