NONHSAT130928
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130928 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
762 nt |
Genomic location |
chr9-:35088732..35090666 |
Exon number |
3 |
Exons |
35088732..35089218,35089377..35089447,35090463..35090666 |
Genome context |
|
Sequence |
000001 CTTTTACTGT GCCATGGCAG GCAGTCTCGG CTTGGGCCCT CATGGCCACA CAGACCTTCT ACTCCACAGG CCACCAGCCT 000080
000081 GTCTTTCCAG CCATCCATTG GCATGCAGCC TTCGTGGGAT TCCCAGAGGG TCATGGCTCC TGTACTTGGC TGCCTGCTTT 000160 000161 GCTAGTGGGA GCCAACACCT TTGCCTCCCA CCTCCTCTTT GCAGATTCTG GCCTGTGCCT TGGCAGCCTC CATCCTTCGC 000240 000241 AGGCATCTCA TGGTCTGGAA AGTGTTTGCC CCTAAGTTCA TATTTGAGGC TGTGGGCTTC ATTGTGAGCA GCGTGGGACT 000320 000321 TCTCCTGGGC ATAGCTTTGG TGATGAGAGT GGATGGTGCT GTGAGCTCCT GGTTCAGGCA GCTATTTCTG GCCCAGCAGA 000400 000401 GGTAGCCTAG TCTGTGATTA CTGGCACTTG GCTACAGAGA GTGCTTGAGA ACAGTGTAGC CTGGCCTGTA CAGGTACTGG 000480 000481 ATGATCTGCA AGACAGGCTC AGCCATACTC TTACTATCAT GCAGCCAGGG GCCGCTGACA TCTAGGACTT CATTATTCTA 000560 000561 TAATTCAGGA CCACAGTGGA GTATGATCCC TAACTCCTGA TTTGGATGCA TCTGAGGGAC AAGGGGGGCG GTCTCCGAAG 000640 000641 TGGAATAAAA TAggccgggc gtggtgactt gcacctataa tcccagcact ttgggaggca gaggtgggag gattgcttgg 000720 000721 tcccaggagt tcaagaccag cctgtggaac ataacaagac cc |
Predicted Small Protein
Name | NONHSAT130928_smProtein_41:274 |
Length | 78 |
Molecular weight | 8118.0971 |
Aromaticity | 0.116883116883 |
Instability index | 55.4455844156 |
Isoelectric point | 6.09051513672 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0886447945271 |
Amino acid sequence | MATQTFYSTGHQPVFPAIHWHAAFVGFPEGHGSCTWLPALLVGANTFASHLLFADSGLCL GSLHPSQASHGLESVCP |
Secondary structure | LLEEEEELLLLLLLLHHHHHHHHHLLLLLLLLLHHHHHHHHHLLLHHHHHHHHHLLLLLL LLLLHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiiiiiiiii |