NONHSAT131014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131014 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6515 nt |
Genomic location |
chr9-:36422448..36485775 |
Exon number |
13 |
Exons |
36422448..36422744,36424610..36424682,36440506..36440755,36441660..36442453,36442716..36443470,36445822..36446316,36447748..36448390,36449735..36450211,36453715..36454339,36457538..36458713,36461192..36461242,36461274..36462020,36485637..36485775 |
Genome context |
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Sequence |
000001 AATTAAGGCC CTTTGTCCAA GATGATTCCT TGTTTAAGTC AGCTGTTTTT TGCTGCCCTC TTGCACCTTA GCTTTCCTGC 000080
000081 TGTGGTGGCT GTTGGCAGGG TGCTTTGGGA AGGACTGCCC CAATTCAGAC AAGATGGGAC TTTTTGCCAA CCTCTTTTCC 000160 000161 CGGTCACTGC ATGTTTGAGT TCCTCAGGGC TTGGGCCTGT TTCTTCATCT CTCTTCTGTG TTTTCTGGAT GATAGCATTT 000240 000241 GTTCCCAAGG ATTTAAATAT CATTTATGTG CTGAGAATCC CCAAATTTGT ATTTTATAGG GAGTTCATAC TTCACATGTC 000320 000321 CAAACTGAAA TTATTATCTG CAAAACTATT TCTCCCCTTA GTTTTTTCCA TCGGAAATGC TTAAACCAGG AATCTAGGAG 000400 000401 TCATTTTTGG CACCTTTGTT TTTCTTACAC ACCACTCCCC ACCACATTCT TGTCCTTTCC AGCACATCTC CAGAATGTAT 000480 000481 TTTGTATTGT TTCACCTCTT TTCACTGAAG CTATCCCATC TCTCCCCCTG AACTGCCACA GTAGCCTTTC AGCTGGTCTT 000560 000561 CACACTTGTC TGGTCTCCAA TTTTTTTCTC TGCATAGCAG CCAGAGAAAG CTTTTGAAAG AATGGGTCAC ATGGTTACTT 000640 000641 AAACTATTCA GTGGCATCCC ATTGCACTTG AATTTACAGT TTTTCCTGTC TCTTCCAGGC TGTTTTCTCT GCATAGAACA 000720 000721 CTCTTGTTCT ACCCTTTGAG TACTCAGCTC CTTCTCATCC CTGAGCTCTC AGCTTTCTTC TGAGGCCTTC CTTGACTACT 000800 000801 CAGTCTAAAG AAGGTTTTAC CTCTCTGCTC TGTCATTGTA TTCTGGTTTT CTTTTTCCTT TATAGCATAC AGCTTACCAC 000880 000881 TACTCTTTTG TTTGTTTGTT TGTTTGTTTT GAGATGGAGT TTTGCTCTTG TTGCCCTACA ACTCTTAAAG ATGGTGTGTC 000960 000961 CAGAGTTTGT TCCTCCAGAT GTTCAGATGT GTCCGGAACT TCCTTCCGGT GGGTTCGTGG TCTCACTGAC TTCAGGAGTG 001040 001041 AAGCCGCAGA TCTTCGCAGT GAGTGTTACA GCTCTTAAAG GTGGCACGTC AGGAGTTGTT TGTTCCTCCC GGTGGGTTTG 001120 001121 TGGTCTCGCT GACTTCAGGA ATGAAGCCGC GGACGCTTGT GGTGTGTGTT ACAGCTCATA AAGGTAGTGC AGACCCAAAG 001200 001201 AGTGAGCAGC AGCAAGATCT ACTGTGAAGA GCAAAAGAAC AAAGCTTTCA CAGCGTGGAA GGGGACCCAG GCGGGTTGCT 001280 001281 GCTGCTGGCT CGGGTGGCCA GCTTTTATTC TCTTATTTGG CCCTGCCCAC ATCCTGCTGG TTGGTCCATC TTACAGAGCA 001360 001361 CTGACTGGTC CATTTTACAG AGTGCTGATT GGTGTGCTTA CAATCCTTTA AACACAGAGC GCTGATTGGT GCATTTACAA 001440 001441 TCCTTTAGCT AGACAGAAAA GTTCTCCAAG TCCCCACCCG ACCCAGAAGT CCAGCTGGCT TCACCTCTCA TTACTACTAT 001520 001521 ATTGAGGCTC TGCATTCCAA AAGCGTTGGT GTATGTGAGG AGAGGCAACC TTTGTTGTGT GTTCTGCAAC CATCAATGGA 001600 001601 CTGCCTTACC TCCACAGCTT GAAAGCTTTG TTTACTTAAA GCAGGATTCT GAACCTTTTT GGCATGATGG TTCTCTTTTG 001680 001681 AGGATCTGAT AAAAGCTAGG GCTCTTCTCA ACCTAACACA TGCACAAATG CACATACATT CTGAATTTTG TGTACAGTTT 001760 001761 TAGGGAGTTT GTAGACCTCC TGAAGTCCCC TGATAATTTT TTTTTTTTTG GAGACGGAGT CTCCCTCTGT CACCCAGGCT 001840 001841 GGAGTGCAGT GACGTGATCT CAGCTCACAG GTGCCCACCA CCATGCCTGG TTAATTTTTG TTTATTTAGT AGAGACGGGG 001920 001921 TTTCACCATG TTAGCCAGGC TGGTCTTGAG CTCCCGACCT CAAGTGATCC ACCTGCCTCA GTCTCCAAAA GTGCTGGGAT 002000 002001 TACAGACGTG AGCCACCATG CCCAGTCCCC TGATAAACTT AAGCCTGTGG ATCTCAGTTT GAGAACCTAT GCCTTAAAGA 002080 002081 TTATCTTCAA CCGTAAAGTT TGTACATAAG GGAGCCTGGC CAACATTGGC AAAACCACGT CTCTACTAAA AATACAAAAC 002160 002161 AAAATTAGCC AGGCATGGTG GCGGATGCCT GTAATCCCAG TTACAACAGA GGCTGAGGCA GGAGAATCAT TTGAACCTGG 002240 002241 CAGGTGGAGG TTGCAGTGAG CCGAGATTGC GCCACTGCAC TTCAGCCTGG GTGACAGAGT GAGACTCTGT CTCAAAAAAA 002320 002321 AAAAAAGTAT GAAAGAATTT TATGTATTTG TGGTATTGTA GGTACATTTT AATATTTGTT ATGGAAAAAT CTTAAACATA 002400 002401 GCTTTAGAGA GACTAGTATA ACAAACCCAT GCGTACCCAT TACTAAGGTT CAATAATTAT TAGAGTGGCA ATTTTATGCA 002480 002481 TCTCCACTTC TACCTTCTCC CCTCATCCCT ACTTTGTGTT ATTTTGAATG ATTCTAAACA ACATATCATT TATCTATAAA 002560 002561 TATTTCAGTA TGAATCTCTA ATCGTGTACA TGACTACTAT GTCATTATCA CACTTAAAAA CTAATTATTC TCTGGCTGTG 002640 002641 TGCAATGACT CACATCAGTT ATTTTGTGTA TAACTGAGGC GGGAGGATTG CTTGAAAGTA GGAGTTCGAG ACCAGCCTGT 002720 002721 GCAACATGGC AAGACCTGGG GGCAACAAAA AAGTTTGGAA ATAGAGTGAT GATGGTTGCA CAACTAAGCT TTATAATTGG 002800 002801 GTTTCGAAGA GTTAGGTTCA TGCCACTGAA TTTATGCTTA AAAATGGTTA AAATGGTGAA GTTTATGTAT ATTCTACCAC 002880 002881 AATAAAAAAT ACAAAAGAAA GGGATAGCCT TATGATAGTA TATGATCGCA TATAAATACA TGAGGGAATT CAATAGTGCA 002960 002961 GTTCCTGTGA ACAGAGCGAA TATGTTTGTC AATACTATGT ATTTTATGGG GAGAAAGACC TAGACCAGCC TTTAAATCAG 003040 003041 TGAGCTTCCA AAATTATATC AAATAGCAGA ACTATGAAAA ATAAAACATG ATATTGGAAC TCCTGAGTGA GAAGTCCACA 003120 003121 AAGCTTCTTC CATCCAGTTG AGCAACTTCC CCTGCTTCTG CTTAATTGTA GGACCTGCAA ATGTTTTTGT GTTTGTTGTT 003200 003201 TACGAGATAA GGTCCTGATG ATAATTGTGA GGTTCGTTTT TCAATATCAA TCTCTGGTAA CCAGAAGATT AAGTCAGCTA 003280 003281 GAACATACAG CTCTGAGAAG TCTGGTTAAG AAGATTCTGC TATATTTGAT CATTTATGTT TACATTTGTG CTTGCCTAAT 003360 003361 ACTTAGATAT AGTTTATCAC AATGAATACA AACATAGTGG CTGCAGGGAT ATGGTTGGTT TGGGGTGGTA GATTGCTGGC 003440 003441 CCAGGCCTTA AGAAGACCAG TTCTGTCCTC ACTCTGCCCT CACCCTGTCA TTAAGTTTCT GTGTGCCTTT GGGTAAGTCA 003520 003521 CCTCCCCTTT TGTGCTTGGT GTAAAATTGT AGATGTGATG AGCTTTAAAG GCTCTTTTCA GCACTGCAGA GCTGCATGTA 003600 003601 GGCTTCAATA TTACAGTGAT GAATTGCCCT CTGTTATACT TCTAGTTCAG AAGAACTTAG GGGGTAGAAG CCGCTGCTCT 003680 003681 TGGTTGCCTA TGAGAGTAGT TAATGCACAC AGTGAAAACA AAACCCAATT ATGAAGTTCA GTTGAATGCA TTTTCATTTA 003760 003761 GTCCTATTAA TACAGTTAGT AATTCTTCCC AGTGTTAAAA TCTCAAGCTT CCTCTTGGTC TGGACCCTAA GGTCATTGAG 003840 003841 TTTGAGAGAA AGCAAACTGT TTATATGAGT GCTTCATATT AACTGGTTTC CTTCAAACTC CAGGAACAGA AACTAACCCT 003920 003921 TTTTGTGATA CAAATCAGTG TAACATTCCC AGAGTTTGTA CTTGAGGGGC CAGAATTCTT AGCAGAGGCT GCTGGCATAG 004000 004001 TTAACGCTTG GGCAGGGCTA AGTCACTGGG AAACTGCCTG ACATGATCAG AGGTTCAGGT GTGCTCATGG ACCACACAGA 004080 004081 ACAGCCTGAG AGTTTGTAGC ACATCACAAA GCTTGGTGGA CTTCCCTGTG TAAGAGCCAA AACTTTGTTT AAGAGGCGGG 004160 004161 AAAGATGGAA GACAAGGACT GGATTCAAGC AGAATGCACG TGGGAGAATA AAACAACTCA GGGACTAAGT GCTACACTGT 004240 004241 GTGGCAACGG CTCTGAAGTT CCACATCAGG GGGAATCGTT TGAGCCTGAT AGTTGAAAGG GAGAAGAATC TGAATACATT 004320 004321 TTTCCCTAGG CTGTCATTTC AGGTGACATG TTTTGTTTTT CCTTTTTAAT GTAAATATAT AGCATTGATA TTTTTCTCAC 004400 004401 TCTTGCAACT TTCAGCCATT GCTTTAATAT CTTCGTGTGA AAATCGGTCT TTGAGGTTTA TGCTATTTTT CCCTATAACC 004480 004481 CCTTTTTGCT GTCTTCTATT AAAGCTCTAG GCACAGACAT TTCTCTCATC CTGCACCCCT CAATTCATCA GAGATTTTAT 004560 004561 TATCTGGCTC ACAGTGTTGC TGTCCCCACT CCAGGTCTTG CCATCACTAT GCCTGCGGAC AATCCATTTA ATATTTCACT 004640 004641 CTCTAGGAGC TTAATCTATG TGGAGATAAC AAACATATTA AAAACAGTAT GATACTTAAA AATAACGTTT TAAGGCATCC 004720 004721 ATAGAAGTGG CATAAGCCTG TGTTTGAAAC AAAGCCGTAA TTGGGGGATG GACACCTCTT TTCTTCTAGG TTCACATTTC 004800 004801 CATGTGGAGG GACATCACTG TGTAATTCCC TTGGCTTCTC TTTGCGCCCA GAGGAGGACT TACTAATCTC ATTGAAGAAT 004880 004881 TTGGGTGAGC AACTAGGCAG GGCTTAGGAG CCAGCCACTT GTAGCCTATT CTTGGAAGCT GCAAATTTTC CAGAAACAGA 004960 004961 TCTCTATGTG GGTAGGCCTA TAGTTTTCCA ACTGCTACTG TTATTGGGTG AGCGAATTGC TCAATTCCAG CAGACACTTA 005040 005041 TTTTTTTGAG ACTGAGCCTC TCTCTGTTGC CAGGCTAGAG TGCAATAGCA CGATCTCGGC TCGCTGAATT AAGCTGACAG 005120 005121 TTTGGTCACT ATCTGACTTT TTTGGTCATA TTTCTCCCTT TTTCCAGAAA TGAGTGGGTA GGTGGATGGA GGGAAGGGAT 005200 005201 TTTATTTAAT GAACCCCCAA GCTCCAATAG TAGTCATTGC TAAAAGTTCA TAGGGGAGAT GATACCATCT AGCTTTTTTG 005280 005281 AGGCTTGAGT TGGATATTGA GGGATGGCAG AATTGAGGTA GAGTTTTAAA GATGGGTCTA ACAGTATGAG AACATTCAGT 005360 005361 CAGATTACGG TGAGTTCAAA GAACAGGAAG TTGACAGCCG GTTTGAGCTA AGGCTTTGGC AAGAGTTGGT AGTGATGAGA 005440 005441 TTAGGAAGAT TGGAATGCCT GATGGACAGA TTTGACTCTC CCCCTCCCCC CCTTATAAGT AGGAGGAAGC TATTGATGGT 005520 005521 TCCTATGTAG GGGAATGACA AGGTTAAACT GATGTATTCA GAAAGAATTA TCATTAGTGT CTAAGAGTAG GCTAATATTC 005600 005601 AGTGATAATA AATAGGTTTA TAATCTGATG TTCACTGTAA ATCAGTTTGG AAGTACAAAT GCCTTAATAT ACTAGAAAAT 005680 005681 AATCTTTCTT AGAAGTTGTC ATTCCTTAAA TAGCTGTGAT TTCTTTGAAC AGAAGGTCAA TTCCCAGGCT AATTTAGATG 005760 005761 GACTTGAGGT GTCATAGAGC AATAGTGTTA ACTTCCCAAA GCAAGCCTTT TTGAAAGAGG TGCACAAGTT GTTGTTTTTA 005840 005841 ATTGAGGAGT ATGTATATGA ACGCATCTTA GACCTTTGGT TTGGTGAAAT CCATCCGAAG ATGCAAACAA TACAAAATAG 005920 005921 ATCAATGTGT CCTCAGTTCC ATTGTCCTTT TCAAGGATAA TTACTGTGAG CAGTTTGTAT GTATTTCTAG TCTCTATGTT 006000 006001 TAGATAACAG GGCCTTATTT ATTTATTCTG CAACTTGCTT TTTTTTTCCA CTTAACAGTA TATTTTGGTA ACTTTTCCAT 006080 006081 GTCAGTAACT TTTTCTTTTC TTTTTTTTCT TTCTTTTTTT TTGAGATGGA GTTTCGCTCT TGTTGAGGTA GTGTTGGTGC 006160 006161 TTCTTTTCAG TGCCAGTCCA TCCATCACGA CCACATTTGT CATGATGACA GTGACAAGAG GAACAGGAGA TCAGCAGGGT 006240 006241 AAAGAACTGT CTGAAACGAC TCTCCTTTCT TCCTGCCTAC CATGTATATA TTGATTGTTT CCTAAATGGA AATGGAGAAA 006320 006321 ATGGATTAGG GTCTCTTGAC TATGTATTTA GAATTTATTC AATTCATTCA GTCAGCAAGT AGTACTTATC GATAGGTAGC 006400 006401 TATGTGTCTA GGCATTTAGG GAATACAGCC AGATAGAAAA CAGATAGATT CTAGTATAGC ATTTTACAAT AAGTGAAGTG 006480 006481 GATAAAAGAA AAGTTACAGA TTACAGCCTT TCTTT |
Predicted Small Protein
Name | NONHSAT131014_smProtein_950:1180 |
Length | 77 |
Molecular weight | 7816.9606 |
Aromaticity | 0.0789473684211 |
Instability index | 46.7986842105 |
Isoelectric point | 4.59368896484 |
Runs | 12 |
Runs residual | 0.0164851784634 |
Runs probability | 0.0415562621445 |
Amino acid sequence | MVCPEFVPPDVQMCPELPSGGFVVSLTSGVKPQIFAVSVTALKGGTSGVVCSSRWVCGLA DFRNEAADACGVCYSS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEEEEEEEEELLLEEEEEEELEEEEEEE EHHHHHHHHLLEEELL |
PRMN | - |
PiMo | - |