NONHSAT131103
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131103 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3696 nt |
Genomic location |
chr9-:37877572..37904350 |
Exon number |
4 |
Exons |
37877572..37880745,37881515..37881628,37899826..37899947,37904065..37904350 |
Genome context |
|
Sequence |
000001 ATCAAGGGTG AAGCATGGTG GCTAGCGGAG CCCGCATCCT GACAGGTGTG CTGGCGTGGC CCTCTACCTG CCCCGCCGCG 000080
000081 GCGGCCTGCG GCCAGGAGAA GTAGGCTGGC GACATCTGGC GGGCCGCGGG CCGAGGGAGG GGAGGCGGGG CGGGGCGGTG 000160 000161 TCTCCCTCAC GTGACCCCAA CAGCGCCCAG CGCGTCGCGC TGCGCCCCAA CCTCGGGGTC GGTCACAGTC TGCGCCTGCG 000240 000241 CGGGCCCCGG CTCGCTAGCC GTCCTGCGGG ACGCCGGCGC TGATGGgaaa tccagttatc aaaattgact caagaagaga 000320 000321 gaacctaaca gaacaataac aatggaagaa attgggaaca ttatcacaaa gctatcatcc tgccaaactc caggctcaga 000400 000401 tgtcacaggg tttctattgc ctgggctgga gtgtagtggc atgatcatgg ctcactatag ccttgacttc ctgggctcaa 000480 000481 gcgatccttc cgcctcagcc tcctgagtag ctgggactac agagacgggg tttcgctctt gtgaccaggc tggaatgcaa 000560 000561 tggcgtgatc tcggctcacc gcaacctccg acctctgggt tcaagtgatt ctcctgcctc cgcctcccaa gtagctggga 000640 000641 ttacaggcat gcgccaccac gcctggctaa ttttgtattt ttagtagaga tggggtttct ccatgttggt caggctggtc 000720 000721 tcaaactcct aacctcaggt gatctgccca cctcggcctc ccaaagtgct gggattatag gcgtgagcca ccgcgccGGC 000800 000801 TGCCTTAAAT CTATTTATCT GACGTTCCCA ACTAGGAAAT TTTTTGTCCA AATGAGTATA TGTGATTTTA AAGTAGAAAT 000880 000881 CGAAGGTAAA ATAGGATTTA TCTCAGTTcc tatctccctt caatctattc ttcatattgt caataatttt tttttttttt 000960 000961 tttgagacgt ggtctctgtc gccaggctgg agtgcagtgg tgaaatcttg gctcactgca ccctctgcct cctgtgttca 001040 001041 ggcgactctc ctgcctcagc ctccggagta gctgggattg caggcatccg ccatcacacc cggctaaatt tcgtattttt 001120 001121 tcagtagaga cagttttgcg ccaggctggt ctcaaactcc tgaccttaag tgatccacct gcctcagcct cccaaagtgc 001200 001201 tgggattaca ggcgtgagcc gccgtgcccg gccatcagta attttttaaa atgtcacttc aataaatgct tttcctctgc 001280 001281 cataaagacc aaacatcttg ctgtggccta caggagacag gatgatccag cccttgcctc ccttactctc atctctagct 001360 001361 aaaactgcgc tgctgtctct gcactccagc cactggcact tcctgattac ttggggcacg ctgtactcat cttgctccca 001440 001441 gcctctgccc atgcaggtgc cctctgccct cagcactgcc tttctctact tcatttatag actgctgtcc ttcagatctc 001520 001521 ggttgaagtg tcacttcctt ggggaagctg gcttacactc tcaggactcg gttaggttcc cccgtcaggc tcttctatgt 001600 001601 caccatgttt ctatttttca cagcacttaA CCTGTTTTAA TTACGTTGCA AATAGTTTTT GTTTGGGTCT AGAGAAGCAT 001680 001681 GTATTCACTA GTACATTTTA TTTGTGTTCT CTAATTATTT TTTCTGCAGC TAAATTAGAA ATTTGTAGTT TTCCCCCTAA 001760 001761 AAATGCAATG ATGTTTTCTC TGATTTTCTT GTCACCTTTC TTCCAAAAAA TCCATGTGTT CAAAGTGCTT GCTTGCAGTT 001840 001841 TGCCCCATAA TAAATGGTTG TTTAATCCAA ATATCTGAGT AGCAAACTGA GCTGATCCTT CTGGAGAAAG TATGGTTGAA 001920 001921 TAGCCGAGAC CACTGAGTAG TCGCAGAGAA GACCACACAT CCTGAACTCC TCAGTCTGGT GTGAGGGGAG GACAATAGAT 002000 002001 AACTGGATGT GTAGTGTTCC CAAACATCAC TGATCCCAAA CCATTGCTTC TGCCTGCCAC TGCCACAAAT ACAGTACGAC 002080 002081 TGCCACCCCT TCATACTCAG CTTTAATCCT CAGCATTTCT TCTGGTCCTT TATGTGCGGA TGTTACTCAA AGTCTACATG 002160 002161 GAATGCCAAA ATTTCCACAG GCCTTGATTT TTTTCACGGT GATTAAGATC AGAAGTAGAA CCCATCAATA CTATAACACT 002240 002241 GCACTGACTT TCTGATTTCA AAAGCAACTC TACTCTCTAC AACCCACGCA AAGTTTTTCC TTACCATTTG GAACCCTTCA 002320 002321 GGAGTTACAC TGAAGCCTTG ATAAGACTGT TTCAgccagg agtggtggct cacgcctgta atcccagcac tttgggaggc 002400 002401 taaggcagga ggattgcttg agtctgggca acatggcaag actggctcta TTTTTTTAAA ATAACATTTT TAAAAGTATG 002480 002481 ATTAAAAGAC TGTCTTTCTA TTGGCTTTGC TCCCCCGATG GTGAGTGTCT CTAGGAGTCA TTATCAATAA CATCAGTGAG 002560 002561 AATTTCTTTG CTGGTCACAT GAACACCAAA TTCAATCTTC ATATCAACCG GTGTACAGTT CTGGGAGCAA CCGGGATTTC 002640 002641 TCCGGGATTT CAAAAACAGC CTATGTGGCA TGACTCATGA TATCCACTTC AGTTTTATAC CAAGTGCAGC AAAGCCAAAT 002720 002721 TTTGCTGCAA TTAGCTGTTG CCTAGACCAC TGTGGGTCAT GATTGGCATC ATCCTTGAAA AACATCTCCA CTTTAGGTGG 002800 002801 GCAAAACTCA CATCCTTCCT TGACACCAGG ATTTCTTTCG AGTGAAGAAC CAGTTGGTAT TCTTCTGCAA ACCATTCAGT 002880 002881 TGGAATTATT TCACACTGGG GCACAATGAA AGCTGTCTCC TCACATTTTC TGGTGAAAGC AGTTTTAATA CCTGCTTCCT 002960 002961 GTAACAACAG AAAAATGCAA CTGGTAATTT TATTTGAGAT TGCAGCTTTT CCTTCCAGGT GATTCTGACT GCATTTCCTG 003040 003041 CTGTAATCTG GTCCTTAGAT TGCAGGACTT TTCCTGGCCT ATCTAACAAG CAATTCATAG ACCTCTTTTG TTTTACCCTC 003120 003121 ACATAGTTTT TTAGCAATGT TCAGTACCTC AGCTCTCACT ATTATCCTGA GTGGGATGAA AGTTGCACCC ATGCTGAGAG 003200 003201 GCAGAAATCT CTGTTGTGAA TATTTGATAC CTCTTGCttt atttatttat ttatttattt attgacacag attctcactc 003280 003281 tgtcacctag gctggagtgc attggcgcaa tcttggccca ctgcagcctc agcctcccag gctcaagcga tcctcccatc 003360 003361 tcagcattgc cagtagctgg gaccacaggt gtgtgccacc attcccagct aaattttgta ttttttgtag agacagggtt 003440 003441 tcaccatgtt gcctaggctg gtctcaaact tctgagctca agtgatccac ccacctcagc ctcccaaagt gctgggatta 003520 003521 caggcatgag ccaccatgcc tggccCTGTT GCCTCTTTAA AAAGCCAGTC CTggcagggc acagtggctc acgcctgcaa 003600 003601 tctcagcatt ttgggtggcc aaggcaggag gatctattga gtccaggagt ttgagagttc aagtccagcc taggcaatat 003680 003681 agtaagacct tgtctc |
Predicted Small Protein
Name | NONHSAT131103_smProtein_689:964 |
Length | 92 |
Molecular weight | 9971.6416 |
Aromaticity | 0.131868131868 |
Instability index | 43.3747252747 |
Isoelectric point | 9.18463134766 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0323895323896 |
Amino acid sequence | MGFLHVGQAGLKLLTSGDLPTSASQSAGIIGVSHRAGCLKSIYLTFPTRKFFVQMSICDF KVEIEGKIGFISVPISLQSILHIVNNFFFFF |
Secondary structure | LLEEEEELLLLEEELLLLLLLLLLLLLLEEEEEELLLLLEEEEEELLLLEEEEEEEEEEE EEEEEEEEEEEEEELLHHHHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLHHHHHHHHHHHHHHHHHHHLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiTTTTTTTTTTTTTTTTTTTooo |