NONHSAT131173

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT131173

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1713 nt

Genomic location

chr9-:38566257..38568006

Exon number

1

Exons

38566257..38568006

Genome context

Sequence
000001 ACCCTGAGCC CACCCCCAAG GTGGCCCTCA ACCTTTAAGA GTGGGAGAGC AAAATTGACG GCTTCGAGCG CTTCACCAAG 000080
000081 AAGATGGACC ACAGGGCACT CAGCTCAACT TCTCAGCCAA TGAGTTGACA TGCAAGCAGA TTATGGTGAC GGGCTTTAAG 000160
000161 AAAGAGCATC AGAAGGTGGC CAGCTCTTCA GCCTCAGCCA GGTCTTGGAG CTGGACCAGG CCATCACTTC ACCAGAGATG 000240
000241 CCTTCAACAC CGTCGGTGAG CTCTTTGCCA ATCAGCCCAG CCAGGAACTG GACCCAGTCA TGGACCTGTT AGTGCTGTCT 000320
000321 CTGGGACACC AGGTCATCAT CCTGGACATC ATCCACATAC ACAAGGAAGC TCTTACCAAA GTCATGGAGA GCAGGCAACA 000400
000401 TGTGGCAGAA GGGAAGACAG AGATGCAGAG GCTGATGACA TCAGAATCAC AGGAACAGGA TTTCTTTGGA CACTGTGGCT 000480
000481 GAAATTCACC ACTTCCATCC AATTCCAGTG AGAAACATGG ACTCACAGAT GCAGCATTTC TTGCAACAAG AGATACTATT 000560
000561 TTTTCAAAAG GTCACCCAGG AATTGATAGT GTTGAATGAC TAGATACTCG ATTGTGCACT GTTTCCAGTT CAAGGATGCT 000640
000641 TTCTACAGCA GAATAATAAC ACTAGCAAAG AGATAGTGCC AGGTATTGGC GGTAGTACAA GGATGGCTTT GTTCTCAATT 000720
000721 GAAACTCGGC TGAACATAGA ATTGTGTAGG AAACAGTTAA TATGGCGATA GAATAGAAAC AGTAGCAAAC ATGACCTAAA 000800
000801 CCATGCTATG AATTCCTACA CTACCATTGT AACTTTTGGA AGAATGATAC CACTTACTTT ATTGCTTTTT GAAGTATGAA 000880
000881 TATTTTCGTG TATATGCTGT AGACCTCAAA CCCTGTGAAG AGTCTCAAAG AAGCTGGCTG GATAAAGCCT GCTGTGGATG 000960
000961 TCTTTATATT CAAAGATTGA TGATGCAATT TGAATATGTG TCCTCACCAA ATCTCATGTT GAATTATATT TCCTAACGTT 001040
001041 GAAGGTGGAT CCTGGTCTAA GGTGATTGAA TCCTGAAGGC AAATTTCTCA TGAATGGTTC AGCACCATCC CCTTGCTACT 001120
001121 GTCCTCACAA TCATGAGTGA CTTCTCATGA CACCTGGTCA TTGAAAACTC TATGTCACCT CCCTACTCTG CATGTTTTCC 001200
001201 TCTTGCCGTG TGAGACAACT GACTCTTTCT TTGCCTTGCA CAAAGATTGA AAGATTTCTG AGGCCTCCCA GAAGCAGAAG 001280
001281 CCCTGTGCTT CCTGTCCACC CTGCAGAACC GTGAGCCAAT TAAACCTCTT TTTCATAATG AATCATACAG AAAATGGCAA 001360
001361 ATGAGGACTG GAGCATTGCT ATAAAGATAC CTGAAAATGT GGAAGCAGCT TTGGAACTAG GTAATGGACA GAGGTTGGAA 001440
001441 GAGTTTGGAG GGCTCAAAAG AAGACAGATG AGAAGGTTTG GACCATCTTA GAGACTGGTT AAATGGTTGT GACCAAAATC 001520
001521 CTGACAGAAA CATGGACAGT GAAGGCCAGG CTGAGGAGGT CTCAGATAGA AATAAGAAGC TTTCTGGAAA ATGTCTTCCT 001600
001601 TTTGGATATG GAAAGCTTAC ACAATGCCTG TACCACCACT GTACCTTAGA AGCAGTGATC TTGCATTTTA TTTCAGAGGC 001680
001681 TTATAGGCAA AAGAGGCTGC AGCCTTGACT CAG
[back to top]

Predicted Small Protein

Name NONHSAT131173_smProtein_299:481
Length 61
Molecular weight 6859.8639
Aromaticity 0.0333333333333
Instability index 53.4466666667
Isoelectric point 5.59368896484
Runs 10
Runs residual 0.0169326241135
Runs probability 0.0407260201378
Amino acid sequence MDLLVLSLGHQVIILDIIHIHKEALTKVMESRQHVAEGKTEMQRLMTSESQEQDFFGHCG
Secondary structure LLEEEELLLLLEEEEHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHLLLHHHHHHHLLLL
PRMN -
PiMo -