NONHSAT131365
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131365 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1809 nt |
Genomic location |
chr9-:43830636..43835037 |
Exon number |
2 |
Exons |
43830636..43831108,43833702..43835037 |
Genome context |
|
Sequence |
000001 ATGCATATAC AATTTGGGTT GTGGTTGCTG CGTATCTGTT TCAAATGGGT TATGGGCTCT TCTCACACTT TCAGGTCAAA 000080
000081 GGGGACTTTG GAATCCATAG TGTATCTATG TATGCATATA TGATCATGGA TCAGCCTTCC CATTTCTGTC ACTGTGTCCC 000160 000161 TATATGGTTC ATTATCATGT ATGTTACTTC ACTCGAAGGC CATACACAAT CCAAACAAAA CAAAACACAG AAACTGTGTT 000240 000241 GGCTATTTTG ACTTTCTGTT GAAACTATTC TCTTTGGTCa tatatatatt taaaaaatat tttatatata tatatatttt 000320 000321 ttttttcaag tgattatcct gcctcagcct cccaagtagc tgggattaca ggcacctgcc atcatgcccg gctaaatttt 000400 000401 ttttgtgtgt gtatttttgt agatacaggg tttcaccatt ttaaccaggc tcgtcttcaa ctcctgatct caggtgatcc 000480 000481 gccggcctca gcctcccaga ttgctgggat tacaggcgtg ggccaccacC TAAGATATAT ATATATATAT GTAATCTTTT 000560 000561 TCAGTATATT CTCAGGGTGT GTTTGAGGAA ACCttttttt tttttttttt ttttttttGG CCATTGTCCA AGGGTTTAGA 000640 000641 ACTGAATGGG AATGTCTGTA AATGGATCTG ATGGAGGTTG GAATGtgtat cagcttttaa tcatcactgt aacaaattac 000720 000721 taaaacattc tctttattat ctctcacttt agaagtgtgg gagggctgga ctgatgactc tgcttatagt cttacaagga 000800 000801 caaaatcaag gtgctcttgg gctccttatg aaggccctag ggcagaatgt gtgtccaagc acatacaggt tagagcagaa 000880 000881 ttcaacttct tgtagttgta ggagtgaggt cccaattcat cactggctgg tagttggggc ctctcagcaa tgtcaggctg 000960 000961 cctgcgttgc tcttcatagt gcccagttta ttttctaaac cagcaatggt gcagagagac attctcctgc ttctagtttc 001040 001041 tctggcttcc cctcacccac acctctcttc tgtgtctctt ctgcctccaa ccagagttaa atctcttaag tgctcatgtg 001120 001121 attacatgga gcccactgca tgaatcacga tcatctccta aggtctgcaa ccttaattac atctgcaaaa tcccttatgt 001200 001201 gatgtaacat attcagtttc cagggcatct tggagagtca ttctCATTCT TGCTGCCACA AAATATTCCT CATTCCTTCA 001280 001281 TGAAATGTTG TTTGCTTTCA TATATTTGTC TCTAGAGAAG CATCAGGTAT TTTCtcTTAG AGATTTTCTA TTGCTTATTT 001360 001361 CATTAGTTTC TTTCTGGACC TATTCAATCT GGGCTAGCAA TTCTGAAAAC AAAGTAGTGT GGATCAAACT CTGTCATCTG 001440 001441 TTTCTGTCAC ACAGATTACA GCCCTCATCC TGAAGGAGGG ACAGATTTCA GTCCCATCCT AATAAAAAAA AAATCTCTGT 001520 001521 TCCGTTTACT GTTTTCTTCT ACTTGGTTTG GAAAAATTTT GTTAGAGGCA ATTGTCGATA CCACATATGG CTGAGAGCAG 001600 001601 GTATAGGAGG TATCCTGGTA CTCATACTTG GAAACCCTTA ATTTGGCATC ATCCTCAGCA CATGAAATTT CTCAGATCAC 001680 001681 TAACAATCTT GGACCGATGA TGATTCCTTA AGCCAACTTC GCTCTTCTGA AAAGGCTGGC GGGCATGGCT GCATTTTTCT 001760 001761 GAGGACTCCT ATGTTATCAT CCACTCAAGA TACACCAAGG CATTAACTA |
Predicted Small Protein
Name | NONHSAT131365_smProtein_773:997 |
Length | 75 |
Molecular weight | 8001.2325 |
Aromaticity | 0.0540540540541 |
Instability index | 43.7635135135 |
Isoelectric point | 7.67474365234 |
Runs | 13 |
Runs residual | 0.0330257086355 |
Runs probability | 0.045676898618 |
Amino acid sequence | MTLLIVLQGQNQGALGLLMKALGQNVCPSTYRLEQNSTSCSCRSEVPIHHWLVVGASQQC QAACVALHSAQFIF |
Secondary structure | LEEEEEELLLLHHHHHHHHHHHHLLLLLLLEEEELLLLEEELLLLLLEEEEEEELLHHHH HHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |