NONHSAT131812
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131812 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2707 nt |
Genomic location |
chr9+:72935053..72937759 |
Exon number |
1 |
Exons |
72935053..72937759 |
Genome context |
|
Sequence |
000001 AGTCACACAA GTGCTTTTCC TTGAAACAAC ATTTATACTT TTGAATATAC TACAAATATT TAATAAGCAC AGCCTGCCCT 000080
000081 CCATATTCGT GGGTTGCACA TCCATGGATT CAACCAACCA CAGATCAAAA ATATTCAAGA GGCCAGGTGC AGTGTCTCAT 000160 000161 ACTTGTAACC CCAACACTTT GTGAGGCCAA GGCGGAAGGA TCACTTGAGT CCAGGAGTTT GAGACCAGCC TGGGCAACAT 000240 000241 GGCAAGACCT CATCTCTTTA GGCAGGGCAG GGAGGAGGGA AGAAAGAAAA ATATTCAGGG GGACAAAAAT GGATGGTTAT 000320 000321 GTCTGTATGG AACACATACA GACTTTTTTC TTGTCATTAT TCCTTAAGCA ATACAATATA ACAACTATTT ACATAGCATT 000400 000401 TATGTTGTAT TAGGTATTAT AACTAATCTA GAGATAATAT AAAATATATG GGAGGATGTT CATAGGCCAT ATGCAAATAC 000480 000481 TACATCATTT TATATAAGGG ACTTAAGCAT CTGTGGATTT TGGAATCCTT AGGGAGTCCT GCAACCAATG TCTGATGGAT 000560 000561 ACTGGGGGAC AACTATATTA TGTACTTCCT ATGTCATGAC ATTGAATATT AAAAATATAT ATACTTAAGA TTTTGAGGTT 000640 000641 TAATAAAATT TATGAATTTT ACTGCTTCAT CAAGGATATT CTTAAGGGAA TTTGGCATTT TTAAAAATTT CAATTGCATG 000720 000721 GCAGTGAAGA ATCTAAGAAC TAGTATACTT TGGTGCACTA GTTTTGGTAC ACTACCTTGA TTTATTCTAA AGCACTAGCA 000800 000801 TTTTTACTTT CCATTGCTTT TACACCGTCA GTGCAAATGA CAGCATGGTG AGAAAGGCAA ATGATGTCCT GTTACCACCA 000880 000881 TGAAAATAGT TTTTAACTCA CAGACTCCTG AAATAGTTTC AGGTATCCCC AGGAGTCTGT AGACCGGACT TTGAGAACCA 000960 000961 CTGCCCTACA TGATTATCCA AAACAATATG TCCCTTGAGT TCTGAATGGT AGGAGAGGAG AGGGGAAGGC AGAAAAATTG 001040 001041 TCAAACTAGG CTGTTTTTTC TCTAGTTCTG AAAGAGAGTA ATAGGGAAGG AGGAGGTTAT ATTGAGTTTC ACAGAATAGA 001120 001121 TTGGGCACCT GAGGGTTTAT CTCACTCATT TAGTTGCAGT CTTCCTTGTG ACAATTAGAA TTATGTCTGC TTGGCCTTAA 001200 001201 TGGGTCATAT ATTCCACAGA ATTCTGTACA AAATGTAAAT ATAATATTGT CAAATGTCTT TTTTTTTTTT TTTTGAGACG 001280 001281 GGGTCTTGCT CTGTTACCCA GGCTGGAGTG CAGTGGCATG CTCACAGCTC ACTACAGCTT TGAACTCTTG GGCTCAAGCA 001360 001361 ATCCTCACGC CTCAGCCTCC TGAGTGGCTG GGACCACAGG TGTGCACCAC TATGCCCAGC TTTTTTGTAG AGATGGGGTC 001440 001441 TTGCTATGTT GCTGGGGCTG GTCTCGAACA CCAGACCTCA ATCAGTCCTC CCGCCTCAGC CTCCCAAAGT GCTAGGATTA 001520 001521 CAGGCATGAG CCACCACACC CAGCCAAAAG TCTTTTCTAA ACAGAAAACT GCTGATTTAT TGTGAAAACC CAGTCACCCA 001600 001601 TTCTCAGAAC GATTGTAACT TTTATTTTGA ATTTAGATCT TTTGTAGAAA CCAGAATATA TAAGGTGGGA TAAAAGCTAT 001680 001681 TAGGGTTTCA AGTCTGGGGA AAAGGCACAC GGTTTCCAGT TTCAAGGTTT TTTCCATATC CTACCATAAC ACAGCCCACA 001760 001761 GCTTTTTGTT GTTGTTGTTG TTCTGACTTC TCGTCTATAG ACTAAAGATA GATATTAGTG ACATAATCTT TAATAATAAG 001840 001841 TAACAGCTCA TTGTCTTGAA TAAGGTATGT TTACCTTGAC TTAATATCGT TTGTATTTCT AAACACATTT ATAAATTGAA 001920 001921 TCATATTTGA AATGTATTAG GAAGATTTGT TCTTTGTTGT TTATGTTTTT TTAAAGCAAA CAATTGCCCA TTAACTTCTA 002000 002001 TTTTTAAAAT TGGTAATGTG CCTTGGTTGT TTAAAGCAAG ATATATCTAT TTAGTCTAGC TTCCTAGAAT TTGTTTCAAC 002080 002081 TTTAAACCTT TCTTTAAACT TTTAACCCTT TCCTTCATTC CTATTCAATC TTCTGCAAAA CGCTCAACCT TTATTGCGCA 002160 002161 ATTGCTGTAT TGAACCCATT GTCTAAAACT AAACTTTCTC CTCGTAAAGT AATGTTGATT TTTCACAGTG AGATGACTTT 002240 002241 TCATACGTGT TACTAGCCTA CTATCTCCTA CTTCTGTTCA CTTTGGACTA CTGCAGTGGT GACCTAGTTA GTGGTCTCTG 002320 002321 CCTGACTAGT CACTTCTGTA TTTAATTCAT CCAAAAGACT GTTGCAAAAT TTATTTTCTT TGCATGTTCC TACCCCATTC 002400 002401 AAGAATATTC ATTATGAGGC CAGGTGCGGT GGCTCACGCC TGTAATCCCA GCACTTTGGG AGGCCGAGGT GCGTGGATCA 002480 002481 CTTGAGGTCA GGAGTTTGAG ACCAGCCTGG CCAACATGAT GAAACCCTGT CTCTACTAAA AATACAAAAA TTATCCGGGC 002560 002561 ATGGCGGTGG GCGCCTGTAA TCCCAGCTTC TCGGGAGGCT GAGGCAGGAG AATTGCTTGA GCTGGGAAGT GGAAGTTGCA 002640 002641 GTGAGCTGAG ATTGTGCTGC TGCACTCCAG CCTAGGCAAA AGAATAAGAC TCCTATCTCA AACAAAC |
Predicted Small Protein
Name | NONHSAT131812_smProtein_308:412 |
Length | 35 |
Molecular weight | 4158.9182 |
Aromaticity | 0.235294117647 |
Instability index | 46.2941176471 |
Isoelectric point | 5.30230712891 |
Runs | 4 |
Runs residual | 0.0685033507074 |
Runs probability | 0.0 |
Amino acid sequence | MDGYVCMEHIQTFFLSLFLKQYNITTIYIAFMLY |
Secondary structure | LLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTi |