NONHSAT132534
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT132534 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3019 nt |
Genomic location |
chr9+:82503916..82506922 |
Exon number |
1 |
Exons |
82503916..82506922 |
Genome context |
|
Sequence |
000001 GGTCATTCCA GATGCCTGCA GGTGATCAGA TATCTAAGTA ACCCTCTTGC CACCAAATAC CACACACACT TCAGTTACTC 000080
000081 TTTCAAAAAA AATTATCAAG CAACTGCTCT GTGCCAGAGA CTCTTCTAGT CCTGAAGATA CAGTGATAAA TAAGATAGAG 000160 000161 ACAGTTCCTG CTGCCATTCA GCTTGGTTCT AGTGAGAAAG ACAGATATAT TAAAAAATAA CTTGACATTA CATTTTCAAG 000240 000241 AATTTAAGTA CTTTATTGGA AAATATAACT GTGTAAGAAG ACAGATATTG ACAAGGACAC TTAGTTCTTG TAGCGAGGAA 000320 000321 GTATAGACTT AACTCTTATT ATTAAAAGAG TGTTTAAGAA TAAAAATATA TCAATACCCC TAACTTTGGA GACAAACTGA 000400 000401 AGTACTGAAT GTACTTCTAT TTTTGATTTT TCCCTTAGCA TGGTGAGTTG TTTGGGAAAT GATTCAATAG TTATTTGTAG 000480 000481 TTTCTAAATT CTCAGCAGCA GTTGCCTCCT GATATGTGTC ACTATATATT CTGAGTTGAC ATCTGTTATC TGAATCACCA 000560 000561 AAATAGTGCC TTGTTTTAAA ATTTATCCAC TATTGGCTTA TGTTTTATCT TACTCTAGGC CATGTTATCA CTACATGTGA 000640 000641 CATCTCTGTA TATGTGTTTG TGAAACTGGG ATAAAGTTGG CAAAACTTGA GATAGAGGAA ACTATCTATG AAACATGTTT 000720 000721 TGCATTAGTA GAACAGGAGG CATAAGCACA TTTGGAATAG AAAGAACAGA GAAGGCGATA CTGGAGAAAT AGGATCTCAC 000800 000801 AAAGGAAAGT AGAATGCACG TAGAGAACTT AAATGCAATT TAGGCAATAA CCTATGCAAT TTGGACAACT ATAGACCTAC 000880 000881 TATGGCTTAT GGTTTCTACC AACTAGACTT AAGCTTCTTT TGGAATAAAG CCTTTGCTTC ATGGAGGAAG TCAGTTAATG 000960 000961 TTTGTTGATT GTGATTTTGA TGATGACATT CATGATGATA TTCTATTTGG GGAATGTTTT TCAAAGTGGG GCTTTGACCT 001040 001041 GACAAACTGT TATACCGATA GAAAAATCAA CATTCTCTCA CTGACACCTT AGGTATTTGA CAGATATCTG AAAGAAAAAT 001120 001121 AATTTGATAT GACCAAGCAA TAGTGAAGTG TAGGATATTG ATCTCCAGAG ATTTGTGAGA CTAAAAATTG TGCAAACGAA 001200 001201 TAAAAAAAAA ATCATAGTCT AGATTATCCC AATGTTGAAC AATATACTTA TGTTTACACA TAATGTTGGA AAAGGCATCA 001280 001281 GTGCAATTTC TACAATGCAC TGATGATAAT GATAATGAAA TTTTAGTGAC AATGTGATAA TGAAATTTTA GAAGAAATTA 001360 001361 TAATTAGTTT TTCATCTCTC TTAAATGGAT GTGTTGTTTT TTCTGTCCTC TTCCTTCTCC ATTTATGCCT GTTCTGGTTC 001440 001441 CTTGTTGACT TGGGGAAATA TACATGTGGG TAATAAGGGT GAACATTTCC GCAGAAACAA AGCAGGTCTA CTGTGCTTCA 001520 001521 GCAGGCTTAA CTCTCATTTG TTCAATGAGG GTTTGGAAAG ATGGGGGGGT TTCCTACGTA TAGTCAATGC ATACTTAAGA 001600 001601 ACACCTACTA TGTGCTGGCT TCATTTTAGT CTCTAGGAAC TGGGAGACAT ATTGAGCCAT CTGTATCTAC ATATATTAAA 001680 001681 ATTGTTGTAC CGAAGAGTAT TTCAAGGTCT TCTATCTGTT TTCTTTTGGA TAGAAGCAGT CAGTGCAAAC CAGCATGGTG 001760 001761 AATGAGCTTG ATTGTATTTA AGAGAAAAAA TTCTCACTTT TGGGGTTTTT GCTACCAATT TTAAGAATGG GGAGCTGTTT 001840 001841 TCAGAACTAA AAGTTTGCCA GCGCACTAAG ATGTAAAATG AAGAAAAATT AAAAAATAGC TCTATGGTTT CAAAGAATGT 001920 001921 GGAGCTACTT TGGCTTCATC GGCAGAGTAA GTCTGTTAAT AACCCCGAAG CTCTCCCCTT GTTGAAATAA CACAAATTAG 002000 002001 CGTTTAACCT GGGAGGAAGA CACGTGAAGT TATTTAACAT TTACATAAAA TTATGGAGTA AACTCCAAAC AGGTCGCCTC 002080 002081 CAAAATGTAT AATTACACTC AGCAGTCCTG TCAGCATACA TAGAAACAAT TTTATTTCCA ATCATCTTCT GCTTTTATTC 002160 002161 ACTCAGGAAT GTATCATTAG AATTTCCACA GAACAATGAA CCTTAATAGG CGCTAATGCA ATTGTGAATT ATGGTAATTG 002240 002241 TTACCTAAAT TAATCTCTGT ACTTTCCATT CCTTATTGCC CTGTGCATAA GGAGTGTGAA AAAGATAATG TTGAAACTGA 002320 002321 CATTTGTATA AATGGTATAA AAATTTATCT TATTTAATAA AAATTTAATA TAAGAACTTG CTACTTTGTA AAGTAGTTTA 002400 002401 CTTAGAAAAA AATGTTAGAT TTGTTGCAAG TTGGGTTTAT AAAATCTTTA ATTTGTGAAA TTTGGGAGGG AAACTGGCAG 002480 002481 TTGACTCATT ATGGTTATCT TTGGGGTATG TGTATGCACC GAGGTATCGG GATGGTACAT GTATGTTCCT CCGTGCACAT 002560 002561 ATTGCCAGGG CAGTGTATGC ATTCGTACCC TTATCTGTGT GCCTGGCCTC TTTCTGTGTG TTTATGTTTA CTCATTTACG 002640 002641 TAAACTACCC TCTTGGTGTA ATAAAATCCA CCATTATGTG TTGAATTGTG TTCCTCTCAA ATTCATATGC TGAAGTCTCC 002720 002721 TAGTTCTTCA GAATGTGACC ATATTTGAAG ATAGGACCTT TAAAGAGGTG ATTAAGTTAA AATTAGGCCG TATGTTTGGG 002800 002801 CTCTAATCCA GTGTGACTGG TGTCCATCTA AGAAGAAATT AGGACAGAGA CATAGAGGGA AGACCATTGG AAGACACAGG 002880 002881 GATAAGATGG CTGTCTACAA GCCAAGGAGA GAGGCTCCTG AAGAAACCGG CCCTGCCAAT ACCATCTTGT CAGATATATG 002960 002961 GCCTCCAGAA CTGTGGGAAA ATAAATTTCT GTTGTTTAAG CCACAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT132534_smProtein_2411:2683 |
Length | 91 |
Molecular weight | 10296.3694 |
Aromaticity | 0.122222222222 |
Instability index | 49.9355555556 |
Isoelectric point | 6.91827392578 |
Runs | 16 |
Runs residual | 0.0379188712522 |
Runs probability | 0.0425112612613 |
Amino acid sequence | MLDLLQVGFIKSLICEIWEGNWQLTHYGYLWGMCMHRGIGMVHVCSSVHILPGQCMHSYP YLCAWPLSVCLCLLIYVNYPLGVIKSTIMC |
Secondary structure | LLHHHHHLHHHHHHHHHHHLLHHHHHHHHHHHHHHHLLLEEEEEELLEEELLLLLLLLLL LLLLLLHHHEEEEEEEEELLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL LHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo oTTTTTTTTTTTTTTTTTTTTiiiiiiiii |