NONHSAT133012

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT133012

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

883 nt

Genomic location

chr9-:93329419..93345611

Exon number

2

Exons

93329419..93329499,93344810..93345611

Genome context

Sequence
000001 CTAGCTTTAA AACCCCTCCA ATACAGAGAG AACTCTGAAA CCAGAACCAG AAGCTGAGGC GCGGTGAATG GAGCATTTTC 000080
000081 CCTGGCATGA TGGATGGGAC CTACGGATCT GGCTGTGAAG GCGGTATCTT GTCACTGGAA TGCCTCTGCA GACTCGGACC 000160
000161 CTTGCAACAC ACAGTTTGCA AACCCATTGC AAACCCATAG TTTGCAAATC AGACTCAAGA ATGATCTTCA GTATTGGTGG 000240
000241 TTTTGTGTGG GTTTTGTTTG TTATTTTTAT TTGTTTTTGA GACTTCGTTA TTGGCACAAC AGCTTCTGGA AATCTGTTTC 000320
000321 ACAGAGAGTA TGGGGGCTTC TTTGGCCAAA TGGAGTGGGT ACTTATGAGT TCGGTCAGTG CCTGAGGGAG CACTCACTTC 000400
000401 CTTGCCTGGT CATATTTTCA TTGGTGCAGG CTCCGTCTGC TTGGCAGCCA CTGTTTGGGC CACAGCCTGT CCGCAGGGTC 000480
000481 CTGCTCCTCT CTAATTTGTT CAGACATTGT GGTGTGTCTG GCCATATCAT TTGTCATAGG TGTAAAAACA ATCACAACCA 000560
000561 AAGCTTAAAG CTGTTGGGAT GAGCAGCTGC CTGGGAATCA CGCTCCTTCC TGCTCTTTCC AAAAAGCCAG GTGCCGCCGG 000640
000641 CCAGCATCCC GCTCCCTTTG ACCCGCAGTC TGTGCGGGAA GTAGGCCCGG AGTGGTGCCA GCAGGAGGTG GCCTTAGAAA 000720
000721 GGCGGAGACC CAAGGAGCAG AGTGAGTCGG CGTCCAGCTC CACCTGAAAG CGCCATCTTG TCGCCACTTC CCTCAGGAGC 000800
000801 AGGAAGAAGA AGAGATTTTG GAGTAGCAAT GGAATAATGA CTGGAGACTG CAAGAGGTAA ACTGAAGGGA GCTAACAAGA 000880
000881 AAC
[back to top]

Predicted Small Protein

Name NONHSAT133012_smProtein_578:766
Length 63
Molecular weight 6662.4183
Aromaticity 0.0322580645161
Instability index 99.9032258065
Isoelectric point 6.54327392578
Runs 7
Runs residual 0.0407373271889
Runs probability 0.0292729704495
Amino acid sequence MSSCLGITLLPALSKKPGAAGQHPAPFDPQSVREVGPEWCQQEVALERRRPKEQSESASS
ST
Secondary structure LLLLLLEEELLLLLLLLLLLLLLLLLLLLLLHHHLLLHHHHHHHHHHHLLLLLLLLLLLL
LL
PRMN -
PiMo -