NONHSAT133286

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT133286

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4442 nt

Genomic location

chr9+:96928535..96963188

Exon number

7

Exons

96928535..96928663,96931457..96932304,96938145..96938776,96938785..96939872,96941226..96941730,96961029..96961847,96962768..96963188

Genome context

Sequence
000001 CCCTCAGGCC GCCGCGGCGG CGCCCGCCCG CGCCTCCATC CGGGTCCTGG CGCGGTGCTC TCCCGGCAGC GACGGGCGCG 000080
000081 AGGGCCGGGG CATTCCCACG GCCGCGACGG CCCTCTCCGC GAGCGCGAGA ATAATAGAAA CAACGTCTCA CTATGTTGCC 000160
000161 CAGGCTGGTC TCCAACTCCT GAGCTCAAGT GATCCTTCTT CCTCAGCCTC CCAAAGTGCT AAGATTACAG GTGTGAGCCA 000240
000241 CCGGGTTCCT GGCCGAATCA GGTGATTTCT TAGGCCCTTT CTAAATACAA GGTTTAAGTG TTTTGAGGCA GCCGACAGCT 000320
000321 ATACCTTTAA GTCTCTTGCT TCTCTAAGAA TAAGACATTT TGGATCATTT GTTCTACCAT AACGTAATGA ATACAAGTTG 000400
000401 GGAGCATTTT GCTCTTCTGT TAAGCACAGT TGGCCTTCCT GTCCAAGGAT TTTTGCATCC TTGAATTCAA CTAACCTCAA 000480
000481 ATGGAAAATA TTTGGGGGAA AAAAAGTATG TACAACAAAA ATAATATGAT CAAAAATAAT ACAGTATAAC GACTATTTAC 000560
000561 ATAACTTTTA CATTGTATTA GGTATTGTAA GTAATCTATG TAGGAGGATG TGTGTAGGTT ACATGCAAAT ATGACACCAC 000640
000641 ATTTTATAAG GGACTTGAGC ATCTGAGGAT TTTCCTCTGG GAGAAGGAGG TATCCTGGAG GCAATCCCCT GAGGATACTT 000720
000721 TTCTACTTTG TGTGAATTTT TCATTAACAG GAAGTTACAG TACTTTTCTG GTCACCTGAG AAACCCACCC CATATTTTTA 000800
000801 TTAGCCAAAT ATATAATTCT CGAATGCTTA GAATTCATTT CTTAATGATT TCACTGTTGT GCAGTATAGA CTGTGAATTG 000880
000881 CCTACTAAGG ATACAGTTAA TTATAGTAAA CTGTGGAATC TAGATTAAAT AATTACACCC TACTTTTTTT CTTGGCTTGT 000960
000961 GGATGTGTAG ACTACATAGG AAACCAGGAT TACCGAGGAG GAAAAAAAGC CTTCCTGTGG TGCTCAACTG TGATTCCTTT 001040
001041 TCACCATTCA CCCTGGATGT TCTCTTCACT GTGGGATGAG GTAGTAGGTT GTATAGTTTT AGGGTCACAC CCACCACTGG 001120
001121 GAGATAACTA TACAATCTAC TGTCTTTCCT AACGTGATAG AAAAGTCTGC ATCCAGGCGG TCTGATAGAA AGTCAGTTAA 001200
001201 CTAATTGTAC AATATTTAAG ATTAACTTGT CTTAAAGAGA TGTAGTGCAG CATTTGTTTA TGGCCTGGAA ATAAATTAAT 001280
001281 TTAGAGATAA AGTCTGTAGC AAGTACACTG GATGGGGGTG GGGAAACCTT TTGCTTCTTG TCTTATTTCT CTGTGTCAGA 001360
001361 ATAAATGTAT TTTTTTATTT TGATTTATGC TGATAATTTT ATGTTGAAAT TTTCTTTCGA AAGAGATTGT ACTTTCCATT 001440
001441 CCAGAAGAAA ACATTGCTCT ATCAGAGTGA GGTAGTAGAT TGTATAGTTG TGGGGTAGTG ATTTTACCCT GTTCAGGAGA 001520
001521 TAACTATACA ATCTATTGCC TTCCCTGAGG AGTAGACTTG CTGCATTATT TTCTTTTTAT TTAGATGATA TTAAAACTCA 001600
001601 GAAGAATTAA TTTTGTATTT ACAGTTTATC AGTTAATTTT CTCTGTTCAA GTAGTACAGT AGGCACAGAT TAACATTTAA 001680
001681 ATTTTTCACA TATGGTATAT TTCAGAAATT TGAAGTTAAG CAAAAATTTT AATGAGTAGA GAAAGTAAGT AGCCTTCAGG 001760
001761 AAATCTTCAT AGAGGACCAG GCCCTTTTGG AATTGTGAAT AGGTTTATTG CCTTACATCC TGGTACACAT GTCCAAGGTC 001840
001841 AGGTCCTGGG TGGTAAAGGT AAATACAAAT TGGAAGGGCA CTGTGTGAGC CAAAATGAGT CAGATTAGTC ATGATTCATT 001920
001921 TCCAGTTTGG GTTTTGGGTG GTCTTGGAGA ATGTTGTAAG CACTGCTTCA TTGATAGGTT GATTGAGCCA GACTTTACTC 002000
002001 AGCAGCCTGG AAAAGGAGAG ATGGGCTCTG GGTTCTACCT TTGCTCACTG GTAAGTTGCT AAGATTTCAG CTTTGCCCTC 002080
002081 AAACCCTGAA GTAGTCCTTC ATTCACACAG TGGGATCACT CGAAAATGTC AGATGGGGAA GTCCATAGGT TGTTACTTTA 002160
002161 AAGAAAATAG AAAAAATGCT GGAAAAGGTT TCTTCAATTT TAATACCCAT GAAGGCCCAT GTTTTAGCTT TCCTCCGATG 002240
002241 GGCAAACCAT ACACTAACTT GGGCCTTGTA ATCAACAAGC AAGGCTAAAA GCTCTCTAAG TGCTTGCTGT TTAAACTATT 002320
002321 TTGTGTTGGA AGAAGAGTTG GAAAAGAGGC AGTGTGGAGG TGAGGGAGAA GTTCCCTCCC TCCAATCATT TCCAATAAAT 002400
002401 GGAAATTTAA GGAGAAATTT GTGTTTATCC TTAATATCTA AGATAATCAC TGTGCAGTGC CATTGGTACT TTTCATGAGA 002480
002481 GTAGAAACAT CAAACTTCCT TGGATGGGCC CAACCCAGGT GACTTAACTC TGGACCAAAT GTATGCTTTT TGTTTTATCC 002560
002561 ACTGTGGACA GCTGCATAGA TAATTGGTCT TTGTTCTAAA CTGCACATAA AAACATGGGA GAAAATGACA TTTGTTGCCT 002640
002641 TTTGATGTGC CAAAGAAGAG TGGGAATGTT CTAAGAATTC TTTTTGGCTT AATCTTTGTT TCCTTGCTAC TTTGCTTTGG 002720
002721 TGTAAGCAGA GTTCTTTCTG TAGGTTTTTT CAAATGAAAA CATTGCAAGA ATATCAAAGA GAGCAGTGTT TGCGTTAGTG 002800
002801 ATTATAAACT GCAGCATGGT GCTGACATTG ATAACTGAAA GTCAACTAAT GAGAATTTGA GACTTCTGAA GTACACTTAG 002880
002881 TTGCTAGTGT CTCCCTTTTG GTGTCACTGG AAAGTTTAGA AAGCATGGTT TTGTTTTTGC TCAGGTTTCT CTTTCTGTGA 002960
002961 TGCAGAGACT CTCAGCTGTT CCTCCTCTAT GTCTACATTA TGTCTGAAGG AAAGAATTTA ACAAAACTTG AAATACTGCT 003040
003041 GTTTTTCTAC AATGTTTGTA AATATTTATC TTGCTGCTTT TCTAGGTTTG TCTTCTGGAT TTAAAATTTG GGGCGGCTGG 003120
003121 GGTGGAATTG CATGGTTTGG GAATGGGTAA TTGAGCTGCT GCTCATTATG GTATGTAACA GTGATTTGTC TGTTTAATAT 003200
003201 GTCCCCACTC AAGATTATAT GAATTTCAGT TGGGAGCTTC TTTCAACCTG CAACCTCTGC CTGAGCTAGT TGACTTCCGT 003280
003281 GAGGCCCTCT GTGACGTAGA ATCAGGAGTG GCTTCCCTCG GTCTGTGCTG GAGACTAGGA ATGCATGCAA GGCTCTGCTT 003360
003361 GCTGCTGCTC CTACTTTTAT ATTACCCCAC CACTCCCTAT ATTAGTTCCA GTGCTGGGTA TGGTTAAGGC CTTCCCCTGT 003440
003441 GGGCTGAATT GCCAGGTTAC CTGGTGGGGA TGTATATCCT GGAGGCAGTC TCTCCCCCTG TCACACTCTG AGGACTTACA 003520
003521 ATTTTTCACC TGGCTCACAG TGGGTGTAGG CTGCAGCCTG CTGCTTCTTT CAAAGGGTCT ATGGTTTCTG TTTTTCTGTT 003600
003601 CAGTTCCTGC ATTGCTTCTT AGAAAAAAGT TCACAGTATG AATTTCTACT CACCATTTTG TCTTTCCAAG TGGGAGAGTC 003680
003681 ATGCTGACAC TGTTTCCAAT CCACCATCTT GGGAAGAAAA ACAAAACAAA ATGTGATTTT TCTTAGCCTA TCCACATGGT 003760
003761 AGTTTAGATT GATTGATTTT CAAATATTGA AACAGCCATG CATGCCTGTA ATAAACCCTA CTTGTAATCA TTTATTACTT 003840
003841 TATTTAAATG TGATCTCTTT TCTTTGAAAT ATATTTAAAA TAGTCTTTGC TAAATCTATT GTTTGGGATT ACTCAAAGAT 003920
003921 GATTTCTGTT GACTTGTTTC CTAAGTAAAG AACACACTGC TGGCCAGGTG CAGTGGCTCA TGCCTATAAT CCCAGCACTT 004000
004001 TGGGAGGCTG AGGCGGGCGG AGATGTACAT GAAGCATGGC ACCAACAGCT GCTCCTGTGA GGCCTCAAGA AGCTTACAAT 004080
004081 CGTGGCAGAA GCTGAAGGGG GAGCCAGCGT GTGGCATGGC AAGGGAAGGA GCAAGAGAGA GAGGGAGGAG CTGCCAGGCT 004160
004161 CTTGAACAAC CAGATCTCAC GTGAACTCAC AGATTGAAAT TCACTCATTA CTGTGAGGAC ACACCAAGCC ATTTATGAGG 004240
004241 GATGCACCCC TATGACCCAA ACACCTCCTA CTAGGCCCAC CTCCAACATC AGAGGTCACA TGAAACGAGA TGTATAGGGG 004320
004321 ACAAAACAGT CAAACCATAT CAGTCCCACC AGCAAGAAGG CTCTCACTGG ATGTGGTCCC TTGATCTTGG ACTTCTCAGC 004400
004401 CTCTGTAACT GTAAAAAATA AATTTTGTTT CTTATAAATT AT
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Predicted Small Protein

Name NONHSAT133286_smProtein_3344:3640
Length 99
Molecular weight 11011.1719
Aromaticity 0.15306122449
Instability index 42.7174489796
Isoelectric point 8.71319580078
Runs 18
Runs residual 0.0446309364867
Runs probability 0.0789171524465
Amino acid sequence MQGSACCCSYFYITPPLPILVPVLGMVKAFPCGLNCQVTWWGCISWRQSLPLSHSEDLQF
FTWLTVGVGCSLLLLSKGLWFLFFCSVPALLLRKKFTV
Secondary structure LLLLEEEEEEEEELLLLLEEEEELLEEEELLLLLLLEEEEEEEEELLLLLLLLLLHHHHH
HHHHEELHHHHHHHHHLLLEEEEEELLHHHHHHHLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooo
oooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii