NONHSAT133286
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133286 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4442 nt |
Genomic location |
chr9+:96928535..96963188 |
Exon number |
7 |
Exons |
96928535..96928663,96931457..96932304,96938145..96938776,96938785..96939872,96941226..96941730,96961029..96961847,96962768..96963188 |
Genome context |
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Sequence |
000001 CCCTCAGGCC GCCGCGGCGG CGCCCGCCCG CGCCTCCATC CGGGTCCTGG CGCGGTGCTC TCCCGGCAGC GACGGGCGCG 000080
000081 AGGGCCGGGG CATTCCCACG GCCGCGACGG CCCTCTCCGC GAGCGCGAGA ATAATAGAAA CAACGTCTCA CTATGTTGCC 000160 000161 CAGGCTGGTC TCCAACTCCT GAGCTCAAGT GATCCTTCTT CCTCAGCCTC CCAAAGTGCT AAGATTACAG GTGTGAGCCA 000240 000241 CCGGGTTCCT GGCCGAATCA GGTGATTTCT TAGGCCCTTT CTAAATACAA GGTTTAAGTG TTTTGAGGCA GCCGACAGCT 000320 000321 ATACCTTTAA GTCTCTTGCT TCTCTAAGAA TAAGACATTT TGGATCATTT GTTCTACCAT AACGTAATGA ATACAAGTTG 000400 000401 GGAGCATTTT GCTCTTCTGT TAAGCACAGT TGGCCTTCCT GTCCAAGGAT TTTTGCATCC TTGAATTCAA CTAACCTCAA 000480 000481 ATGGAAAATA TTTGGGGGAA AAAAAGTATG TACAACAAAA ATAATATGAT CAAAAATAAT ACAGTATAAC GACTATTTAC 000560 000561 ATAACTTTTA CATTGTATTA GGTATTGTAA GTAATCTATG TAGGAGGATG TGTGTAGGTT ACATGCAAAT ATGACACCAC 000640 000641 ATTTTATAAG GGACTTGAGC ATCTGAGGAT TTTCCTCTGG GAGAAGGAGG TATCCTGGAG GCAATCCCCT GAGGATACTT 000720 000721 TTCTACTTTG TGTGAATTTT TCATTAACAG GAAGTTACAG TACTTTTCTG GTCACCTGAG AAACCCACCC CATATTTTTA 000800 000801 TTAGCCAAAT ATATAATTCT CGAATGCTTA GAATTCATTT CTTAATGATT TCACTGTTGT GCAGTATAGA CTGTGAATTG 000880 000881 CCTACTAAGG ATACAGTTAA TTATAGTAAA CTGTGGAATC TAGATTAAAT AATTACACCC TACTTTTTTT CTTGGCTTGT 000960 000961 GGATGTGTAG ACTACATAGG AAACCAGGAT TACCGAGGAG GAAAAAAAGC CTTCCTGTGG TGCTCAACTG TGATTCCTTT 001040 001041 TCACCATTCA CCCTGGATGT TCTCTTCACT GTGGGATGAG GTAGTAGGTT GTATAGTTTT AGGGTCACAC CCACCACTGG 001120 001121 GAGATAACTA TACAATCTAC TGTCTTTCCT AACGTGATAG AAAAGTCTGC ATCCAGGCGG TCTGATAGAA AGTCAGTTAA 001200 001201 CTAATTGTAC AATATTTAAG ATTAACTTGT CTTAAAGAGA TGTAGTGCAG CATTTGTTTA TGGCCTGGAA ATAAATTAAT 001280 001281 TTAGAGATAA AGTCTGTAGC AAGTACACTG GATGGGGGTG GGGAAACCTT TTGCTTCTTG TCTTATTTCT CTGTGTCAGA 001360 001361 ATAAATGTAT TTTTTTATTT TGATTTATGC TGATAATTTT ATGTTGAAAT TTTCTTTCGA AAGAGATTGT ACTTTCCATT 001440 001441 CCAGAAGAAA ACATTGCTCT ATCAGAGTGA GGTAGTAGAT TGTATAGTTG TGGGGTAGTG ATTTTACCCT GTTCAGGAGA 001520 001521 TAACTATACA ATCTATTGCC TTCCCTGAGG AGTAGACTTG CTGCATTATT TTCTTTTTAT TTAGATGATA TTAAAACTCA 001600 001601 GAAGAATTAA TTTTGTATTT ACAGTTTATC AGTTAATTTT CTCTGTTCAA GTAGTACAGT AGGCACAGAT TAACATTTAA 001680 001681 ATTTTTCACA TATGGTATAT TTCAGAAATT TGAAGTTAAG CAAAAATTTT AATGAGTAGA GAAAGTAAGT AGCCTTCAGG 001760 001761 AAATCTTCAT AGAGGACCAG GCCCTTTTGG AATTGTGAAT AGGTTTATTG CCTTACATCC TGGTACACAT GTCCAAGGTC 001840 001841 AGGTCCTGGG TGGTAAAGGT AAATACAAAT TGGAAGGGCA CTGTGTGAGC CAAAATGAGT CAGATTAGTC ATGATTCATT 001920 001921 TCCAGTTTGG GTTTTGGGTG GTCTTGGAGA ATGTTGTAAG CACTGCTTCA TTGATAGGTT GATTGAGCCA GACTTTACTC 002000 002001 AGCAGCCTGG AAAAGGAGAG ATGGGCTCTG GGTTCTACCT TTGCTCACTG GTAAGTTGCT AAGATTTCAG CTTTGCCCTC 002080 002081 AAACCCTGAA GTAGTCCTTC ATTCACACAG TGGGATCACT CGAAAATGTC AGATGGGGAA GTCCATAGGT TGTTACTTTA 002160 002161 AAGAAAATAG AAAAAATGCT GGAAAAGGTT TCTTCAATTT TAATACCCAT GAAGGCCCAT GTTTTAGCTT TCCTCCGATG 002240 002241 GGCAAACCAT ACACTAACTT GGGCCTTGTA ATCAACAAGC AAGGCTAAAA GCTCTCTAAG TGCTTGCTGT TTAAACTATT 002320 002321 TTGTGTTGGA AGAAGAGTTG GAAAAGAGGC AGTGTGGAGG TGAGGGAGAA GTTCCCTCCC TCCAATCATT TCCAATAAAT 002400 002401 GGAAATTTAA GGAGAAATTT GTGTTTATCC TTAATATCTA AGATAATCAC TGTGCAGTGC CATTGGTACT TTTCATGAGA 002480 002481 GTAGAAACAT CAAACTTCCT TGGATGGGCC CAACCCAGGT GACTTAACTC TGGACCAAAT GTATGCTTTT TGTTTTATCC 002560 002561 ACTGTGGACA GCTGCATAGA TAATTGGTCT TTGTTCTAAA CTGCACATAA AAACATGGGA GAAAATGACA TTTGTTGCCT 002640 002641 TTTGATGTGC CAAAGAAGAG TGGGAATGTT CTAAGAATTC TTTTTGGCTT AATCTTTGTT TCCTTGCTAC TTTGCTTTGG 002720 002721 TGTAAGCAGA GTTCTTTCTG TAGGTTTTTT CAAATGAAAA CATTGCAAGA ATATCAAAGA GAGCAGTGTT TGCGTTAGTG 002800 002801 ATTATAAACT GCAGCATGGT GCTGACATTG ATAACTGAAA GTCAACTAAT GAGAATTTGA GACTTCTGAA GTACACTTAG 002880 002881 TTGCTAGTGT CTCCCTTTTG GTGTCACTGG AAAGTTTAGA AAGCATGGTT TTGTTTTTGC TCAGGTTTCT CTTTCTGTGA 002960 002961 TGCAGAGACT CTCAGCTGTT CCTCCTCTAT GTCTACATTA TGTCTGAAGG AAAGAATTTA ACAAAACTTG AAATACTGCT 003040 003041 GTTTTTCTAC AATGTTTGTA AATATTTATC TTGCTGCTTT TCTAGGTTTG TCTTCTGGAT TTAAAATTTG GGGCGGCTGG 003120 003121 GGTGGAATTG CATGGTTTGG GAATGGGTAA TTGAGCTGCT GCTCATTATG GTATGTAACA GTGATTTGTC TGTTTAATAT 003200 003201 GTCCCCACTC AAGATTATAT GAATTTCAGT TGGGAGCTTC TTTCAACCTG CAACCTCTGC CTGAGCTAGT TGACTTCCGT 003280 003281 GAGGCCCTCT GTGACGTAGA ATCAGGAGTG GCTTCCCTCG GTCTGTGCTG GAGACTAGGA ATGCATGCAA GGCTCTGCTT 003360 003361 GCTGCTGCTC CTACTTTTAT ATTACCCCAC CACTCCCTAT ATTAGTTCCA GTGCTGGGTA TGGTTAAGGC CTTCCCCTGT 003440 003441 GGGCTGAATT GCCAGGTTAC CTGGTGGGGA TGTATATCCT GGAGGCAGTC TCTCCCCCTG TCACACTCTG AGGACTTACA 003520 003521 ATTTTTCACC TGGCTCACAG TGGGTGTAGG CTGCAGCCTG CTGCTTCTTT CAAAGGGTCT ATGGTTTCTG TTTTTCTGTT 003600 003601 CAGTTCCTGC ATTGCTTCTT AGAAAAAAGT TCACAGTATG AATTTCTACT CACCATTTTG TCTTTCCAAG TGGGAGAGTC 003680 003681 ATGCTGACAC TGTTTCCAAT CCACCATCTT GGGAAGAAAA ACAAAACAAA ATGTGATTTT TCTTAGCCTA TCCACATGGT 003760 003761 AGTTTAGATT GATTGATTTT CAAATATTGA AACAGCCATG CATGCCTGTA ATAAACCCTA CTTGTAATCA TTTATTACTT 003840 003841 TATTTAAATG TGATCTCTTT TCTTTGAAAT ATATTTAAAA TAGTCTTTGC TAAATCTATT GTTTGGGATT ACTCAAAGAT 003920 003921 GATTTCTGTT GACTTGTTTC CTAAGTAAAG AACACACTGC TGGCCAGGTG CAGTGGCTCA TGCCTATAAT CCCAGCACTT 004000 004001 TGGGAGGCTG AGGCGGGCGG AGATGTACAT GAAGCATGGC ACCAACAGCT GCTCCTGTGA GGCCTCAAGA AGCTTACAAT 004080 004081 CGTGGCAGAA GCTGAAGGGG GAGCCAGCGT GTGGCATGGC AAGGGAAGGA GCAAGAGAGA GAGGGAGGAG CTGCCAGGCT 004160 004161 CTTGAACAAC CAGATCTCAC GTGAACTCAC AGATTGAAAT TCACTCATTA CTGTGAGGAC ACACCAAGCC ATTTATGAGG 004240 004241 GATGCACCCC TATGACCCAA ACACCTCCTA CTAGGCCCAC CTCCAACATC AGAGGTCACA TGAAACGAGA TGTATAGGGG 004320 004321 ACAAAACAGT CAAACCATAT CAGTCCCACC AGCAAGAAGG CTCTCACTGG ATGTGGTCCC TTGATCTTGG ACTTCTCAGC 004400 004401 CTCTGTAACT GTAAAAAATA AATTTTGTTT CTTATAAATT AT |
Predicted Small Protein
Name | NONHSAT133286_smProtein_3344:3640 |
Length | 99 |
Molecular weight | 11011.1719 |
Aromaticity | 0.15306122449 |
Instability index | 42.7174489796 |
Isoelectric point | 8.71319580078 |
Runs | 18 |
Runs residual | 0.0446309364867 |
Runs probability | 0.0789171524465 |
Amino acid sequence | MQGSACCCSYFYITPPLPILVPVLGMVKAFPCGLNCQVTWWGCISWRQSLPLSHSEDLQF FTWLTVGVGCSLLLLSKGLWFLFFCSVPALLLRKKFTV |
Secondary structure | LLLLEEEEEEEEELLLLLEEEEELLEEEELLLLLLLEEEEEEEEELLLLLLLLLLHHHHH HHHHEELHHHHHHHHHLLLEEEEEELLHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooo oooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii |