NONHSAT133392

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT133392

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

8014 nt

Genomic location

chr9-:98568370..98638259

Exon number

3

Exons

98568370..98576204,98612509..98612574,98638147..98638259

Genome context

Sequence
000001 CAAGGTGGCT GGCCGGCAGG CCAATGGCGG CCAACGCCAC TTCCGGCCGC CCTCCGAGCA TCGCTCTTCG GCAACCCGAA 000080
000081 GCCACAGGAT GGAGGAGGGG GATCCCAGCA AAGATCCCAG TTTCTGACCT GTAGCATAGT CCCTCTCTCT GAAGAACTTC 000160
000161 CTGTAATATT TTTTGCTAGG AAGAGTTTGA AGTTTGAAAT CCCAGAATGA GGAAATTCAT CCAGCTTGGA GACTTCCAAT 000240
000241 CCCTTCATTG TGCAGAAGGT TGCTAATGCT CTCAGGAGAA GCCCTTCACC AAGAGAATAC TTCCACATAG AGTCCTCTCC 000320
000321 ATTGAGACTA AGGAAACATG CTATGTCATG TAGCCACAGC AGCCTTTGCA GCTGTTGAAG GCAGCAAGAC TTGCATGGCA 000400
000401 ATCAGAAGAC ACAGAACCAA GACTCATATC CAGTTATAAG ATGGCAGATG GGACACACAC TCATCAGGCT TAGTGAGCAG 000480
000481 CCAATCCAGA GGGAACCATA CTCAGCCCTA GGGGCTGGGC GCGGTGGCTC TCGCCTGTAA TCCCAGCACT TTGGGAGGCC 000560
000561 AAGGCGGATG GATCACCTGA GGTCACGAGT TCAAGACCAG CCTGACCAAC ATGGAGAAAT CCCATCTCTA CTAAAAATAC 000640
000641 AAAATTAGCT GGGCATGGTG GTGCATGCCT GTAATCCCAG TTACTCGGGA GGCTGAGGCA GGAGAATCAC TCGAACCCGA 000720
000721 GAGGCAGAGG TTGTGGTGAG CTGAGATTGT GCCATTGCAC TCCAGTCTGG GCAACAAGAG TGAAACTCTG TCTCAAAAAA 000800
000801 AAAAAAAAAA AAAAAAAGCC CTAGGAAGAT TTCTTCAAAC AGATGAAGCT AATGATATCC CCAGTGTGTT TGAATATATT 000880
000881 GAGAGATCAC ACAATAGGGA CACTGTTTAG GGTTGAATTA ATAGCAAGCA AATGGGATGC TAAGGAAATA TAAAGAATAA 000960
000961 AAGTTCAAAG GGAAAACAAA ATGTTATTCA AGAAAGTCAA AACATCCATC GTAACTTTTT TTTTTTTTGA GACAGAGTCT 001040
001041 CGCTCTGTCA CCCAGGTTGG AGTGCAGTGG CGTGATCTCA GCTCACTGCA AGCTCCGCCT CCCAGGCTCA CGCCATTCTC 001120
001121 CTGCCTCAGC CTCCCGAGTA GCTGGTACTA CAGGTGGCTG CCACCACGCC CGGCTAATTT TTTGTAATTT TAGTACAGAT 001200
001201 GGGGTTTCAC CGTGTTAGCC AGGATGGTCT CGATCTCCTG ACCTTGTGAT CTGCCTGCCT CAGGCTCCCA AAGTGCTGGG 001280
001281 ATTACAGGCG TGAGCCACCG CGCCTGGCTC GTACACTGTT TTATATACCA CTTGCAGTAT CATGATTGTA TAAATACTAA 001360
001361 ATATCTATTG ATCTATCCAA AACTACAACA TAAGTATTTT TGGAATATGG AGGAGTGGGT GCTGAGTATG CATGGGAGAA 001440
001441 GGGAGGCTGA GGTGAAGGTG GGAGAGAAGG AGACAGTGAA ATATTCATCT TCCAAATTGG AAACTCAAAT AGATAATGCC 001520
001521 TAAACATGAA ATATCAATAG AAATGTAATA TTTAAACATA TGGTGGTGCT TCTGGGAAAA AGAAAAGAGG ATGGAGAAGA 001600
001601 CTGTTTGTTT GTATGTTTGT TTGTTTAAAC AAGCAATATG GATGAAATTA CAGGCTAAGC TGCTTTAGCA AAAAGACACC 001680
001681 AAAATACAGA AGCTTAAATG AGGTAGGTAT AAGTTTCTCT GTTTGATATG ATCTCAAGAG AAGCAATCTG GGTTGGAAAG 001760
001761 TCACCTTTAT GATCCTCAAA ACGTAGCTTC CACCTGTGGG ACTAAGGCAG CCATTCTAGT TTTGTCTTCC CAGCCAGAGG 001840
001841 GAAGGAGGAC AGGGTCAGGA GAGCACATGT GCATAACTGA TAGGAACATG CCCCAGAAGG GCCACACATC CATCGGTCAG 001920
001921 GATGTGGGCA TAAGGACCAC AGCTGCATGG GAGGCTGGGA AGCATAGGGT CTAGCTGTTA GCCACGTGCT CAGCTAAGAC 002000
002001 ACTGGAGCCC TGATATTAAA GAAGGTGAGG AATGATGCTA GTGCTCAACC AGCAGTCTCT GTCACATCAG CTTTGCAGAA 002080
002081 TCATTTGATT CTTTCAACTA GGTGCATATA CAACTTCAAT ACAAATGAAA ACTAAATATA AGACATGGTT CTTAAAAATC 002160
002161 ATCTTTTGTA CAATTGAGGA CACAATCAAA ACCCAGACAC CAGGGTCCTG AAGCAGAATG CAGGCATCCA CAGAAGAGGC 002240
002241 GGTGCTGATG GACTGGACCC CAGAGAGTCC ACACCTGCTT GGTGCCATAC CTTGGGTCCC TCCAGATCAG GATGCTCCCA 002320
002321 GCAACTTTTC TAGGATGGTT ATACTGCACA TGCTGCAAAG ATGAGTGGGC ATCCCTGCAA GCCTATGGTT TTAGAGTAAA 002400
002401 TGGTTCCAAA AGAAGGTATG AAGCAGACCC ATAGATGGGG ATTAGTGCAT AGGAGGTTTA TTGGGGAGTA CTCTTGGGAT 002480
002481 CAACATCTGT GAGCAACGAG AAAGAAGCAG GATTGAGCAG GGAAGAAGGT GGGTGTTCTG GAGCTGAGAT CAAACTTCAG 002560
002561 AAGTGTTGTG GCAAGGGGGC CCAGTATTGG TGAGTCTTTC AATGTGACTG CTCCAAGAAC TCACAGCTTG GGGGTGTCAT 002640
002641 CTCAGGTGAA GTTGTTGTGT TCAGCCTGGG CAATTCTGGA GAGGCCTGAC AAGTGAGGCC TGCCCCTGCA GAACTCCTGG 002720
002721 CAGCTCAGGG AACACATTTT TCATTCCTGA GATGTTGCTT CACAGCATCT ACTCTGTGTG GATCCAAGGA GCTGCCTCTG 002800
002801 GGTCTCTGGG AAATCAGTCG TTTGAATTTG GATTCCAGCG TGTGGCTCTT ACATTTCTTT TTAGGAGAAA TCCAATAGTG 002880
002881 GTGCTCTCAT TATGATGACA GAGGGGCTGG GAGGTGCCAG GGGCCCAGCA GGGAAGTGGC AGGAGTACAG CAGCATACTG 002960
002961 TGTAACCTGG GCTAGGTTTT TACTCAAGGT GGCTTAGGAC AGCTTTTGAA GATTACAGGG AGAAGAACCT AAAATATAGG 003040
003041 CAAACCAGAT GATAACTACC CTGCTTTCAT CTGTGCCTCA GGGTGATTAG TCAGCATTTG TTGGTTAACA TGTCAAGAAC 003120
003121 CCTGTGATTT TGTCAAATAT ATATTTGGTC TTTGACTCCA TTTTCTGACA TACAACTCCT AAAATCCTTA TAATCTCCAA 003200
003201 AGTGATAGTG TCTTTTTGTA TGCTTATGAG TTGACTAGTG GCTGACAGCC TCTATGTAGC TTCAGGACAG GGACTGGTCA 003280
003281 CAGGAAAGAC CAAGGCAGCA TTAGAGGGTC GGGACTCTTA GCCCCCTACT CCCACCTCCA GGAACCAGAG AGGGTGGAAA 003360
003361 GGTTGTTGAC CACCAATGGC CAATGATGTA ATCAATCCTG CCTACAGAAT GAAGCCTCCA TAAAAACCCA AAAGGACAGG 003440
003441 GTTTGGAGAG CTTCTGCATA GCTGAACACA CGGAGCTTCC TAGAGGGTGG CACACCCGGA GAGGGCATGG AAGCTCCCTA 003520
003521 CCCCTTCCCC CGTATCTCCC TCTAAGCATC TCTTCATCTA TATCCTTTGT AATACCCTTT ATAATAAACC AGTAAACCTA 003600
003601 TGTTTCCCTG ACTTCTGTGA GCCACTCTAG TAAATTAATC AAACCCAAAG AGTGGGTGGT GGGAGCCCCA ATTTGAAGTC 003680
003681 AGTTGGGCAG ATGTTCCAGG GGCCCCAACT TGTGACTGGT GTCTGAAAGG GAGATCAGTT TAGGGTACTG AGCCCTTAAC 003760
003761 CTGTGGGATC TGAGGCCATC TACAGGTAGA TAGCCTCTGA ATTTTTTTTT TTTTTTTTTT GAGACAGAGT TTCACTCTGT 003840
003841 CGTCCAAGCT GGAGTGCAGT GGCTTGATCT TGGCTCACTG CAACCTCTGC CTTCCAGGTT CAAGCGATTC TCCTGCCTCA 003920
003921 GCCTCTCAAA TAGCAGGGAT TGCAGGTGCA TGCCATCACG CCTGACTAAG TTTTGTATTT TTTAGTAGAG ATAGAGTTTC 004000
004001 TCCATGTTGG CTAGGCTAGT CTCACACTCC TGGCCCCAAG CAATCCTCCC GCAAAGTGTT GGGATTACAG GCATGAGCCA 004080
004081 CAGAATTGAA TTGAATTAGA CACTCAGCTT GTGTCTTCTG CTTGGTGTCT GGGGAAACCC CCACATTTTG TCACTGAAGT 004160
004161 CTTCTGTGTT CACTATTTTT TTTTTTTTTT TTTTTACGTA AGAGCAGAGG AAAAACTGTG TGAGTTTAAG TAGTTGACTC 004240
004241 ACAAACCCTA ATCTTAATTT AGGTTCCAGA ATGGCCCAAG GCAAAGGTTT TAAATAGTCC TTCTCCATCT GCCCTAGAGG 004320
004321 GTTTATTTGT TATCACAGGG GTTGTTAGAA GGAAATTTTC TTTGAAGAAA TGAGTGATGC TAAGGCATGT AGTTGGCTGA 004400
004401 AGAGACTTCC ACTGGCACCT CCTCCCTTGA TCTGGCAAAC CCAGCAGCTG ACCACCTTTG GAGTGACAGA ATCTCTCTCT 004480
004481 CTTTATGGAT AGAATTCTGT CCTATGGTCC CCACCTAATG GAGAGCCACC TATGTCATCT CTGTCACCTA CTCTGATGTT 004560
004561 AAAATTTTGT TGTGACCACA ACAAAGTAAA TATTTCCTGC AAGATGCTTT CCAAAGTACC TAAAAAGACA AGAGAATGAG 004640
004641 AGGAGGAGGT TGCATGGCTA TTTTTGTACT TACCTCCCAA TAAATGTTCG TGTGTATGAG GCAGAATTTG GTCTGAGACT 004720
004721 TGCTTTCATT TAAAAACAAG TCCTGGTGAG GTAGTGGGAG GGAAAGGACC TAGACCTTCA CCTCCTTCTA ACTGCTAGAG 004800
004801 GCTACCAATA TTTTTTAAAA GAGCCTGATA TTTGTGAATG GCTAAATAAG CCCAGAGATT AAGAAAGTAA ATGATGCCTC 004880
004881 ATATTCTTGC TGGTTACATG TTCCAACAAT CTGAACAGTA AAGATACCTG AAAAAAATGA TTATCAACAC ATTGGTTTAG 004960
004961 TGCAGTGATT GATCATAAAA GATAAATGAT CCAGCTGTAG AAATTGGGAA TATGATATAT GATAATGATA GCAAGGCAAA 005040
005041 CCTAACCTGA TTATTCTAGA TATTCATTTG TCATTTACAT GGTGTCTGCT ACTGGACTTG GCTTTGGGCA GGCTCAGGTT 005120
005121 CTAGAAGAGT CTTTCATGCC CCCAGTGATC TGTGGCATGG CTATGGACAA TCCCTGGGTT TAACTCCTAT GTGTGAAAAA 005200
005201 TCTAGAGGAT TCTAGTGGCC GAACATACAG AAAAGTAAAT CCAAAATCTA ATCTTGCTTT GATTTATGTG GTTGGAAGCG 005280
005281 GGGAGGTTTG GGAAATGCAG TCAGACAAAA GTCATCCCAT CTAAATATTA AATGCAAGAG AATTAAAAGG AGACAGAGAA 005360
005361 TAGAAACCAC TGTCAATATG TTGCGAATCT GACAACTCTG GGATTAGACA TGATTTTCCC ATGTTCCCTC ACACAAACCC 005440
005441 TCCATTCAGG CCAGGCCTTT GCTCTTTCTA TCCCCAAGAG CTTGCCCACC AATTTACACC TTGGCTCATG AAACCTAGGT 005520
005521 TGCCCTCCTC TATTCACAAA CTCTCACCAC CCTTCAGCTA TCCCATCCTC ATGTATAAAA TGCCTCCCCA ACTCCTGTTA 005600
005601 GCCAGTGTTG ATCTCTTCCT GTAAACTCTG TTAACTTTGC CACTTATATA TTTCATACTT TTTCTTCTTG AGATTCTAAG 005680
005681 TCCCACAAAC ATTTACTGGG GCAGGCGGAC CTTGTAGTCT TGTGAGACTA TGGACAGATG AGGACTGTCC ATGGTTAGAC 005760
005761 ATGATTAGTG AACAATCCTA TACTGGGAAA ACACATGCTT AAATGGGACA ATACTGAAGT ATTATTTGCT GCATTCTGGA 005840
005841 CTTCTTCCCT TAATCTGCAT TTTTTTCTGG GCAAAAAGCC AGAATGGCCC AAGGCAAAGG TTTTAAATAG TTCCCAGGAA 005920
005921 GCCACATTCA GACTGCAAAG GCATCCTACT GAAGGGGCCA TGGTGTTCAG AAAGGTAGAT GTCCTCTGGG TCTTGCCCTG 006000
006001 ACCCCAAGCA CAAGGTCTTT CCCCTTCTGG AGTCCCTGCC GGGTCTCTGC TCAGACGTGG TCTGCCCTGC AGCTGTTGGG 006080
006081 CTGGGAGCTG GAGGGCAGGC AGGCAATGGG TGGAAATCAG GGGAACGTTT CTCTTCAAAA ACTGCTGTTT GAAGGCAGAA 006160
006161 ACCAGCTGTG CACCTTTCCT AAGGATTCAG GATGAGGATG TTGGGATTTG AGAAGATAGA AAGATCTAAG TCAAAAGCCA 006240
006241 TTTGAATAAG GTAGAAATAT CTTTCTCCTG AAAGGAGGCT AAACATAGAG ACATACCCCA AAGACATGAG AAAATGAGAG 006320
006321 TCTTTATACT TGGTGAAAAC AAGAAATGAA AGATGATGGA AAGATGCATG CAAATTATCT TCCAGCTTGC TCTTTTGAAG 006400
006401 ATGCTCGTCT AAAAATAAGA TCACGTGGAG GAGAAATGAC ATGTCTGGTG CTGAAAACAA CCCTACTGGG ACCAGGAGAT 006480
006481 GTGGAGCAAA ATGTATTCAG AAAGAGACTT TGCTCTGGAA ACCATTGCTC ACTGCCCTGC TGCCAAGGTC ACAGAGAGCT 006560
006561 GGAGCTTTGC TGCTGCAAAG CTGTTTACAT ACAAGGATAC ACAGGAACGA AAGGTCATGG GAGGTACTTG AGCCTGGAGT 006640
006641 CTCCAAAGTC AAAAGACAAT AAACACACCA ACTTTCAGGG CTTTTAACAA GCACAATCGG GCCAAACAAA TTCTCACTTT 006720
006721 GGATGTAGAT CCACAACATC TTGCAGCAGA CGGAAATAGG ACTGGGGCAA GAGTTGGTAC AAACAGAAAT ACTAAGTTTA 006800
006801 TCACGACCAA AATAGGCAAT GGAGGGTAAA AGCCCGCAAC CTACTTCAAA TATATCTGAA CTGGTGTTAA AACTAAGCTA 006880
006881 GCATTGAAGA GAGGGATAAA ATTCAGGAGC AAGTTTCCAA AGAGACTCAT AAGAACCCAG AGAGAGGAAA ATCTTTTTCA 006960
006961 GAAAATTCAT AAAAGTTAAT GAGTCGCCAT TCTGATGTAA CGGAGAGAAC TTCAGTAATA TGACCAGTGA TGGAGTTGGT 007040
007041 GTGAAATGCA TAGACTCCAC TATGACCTGA CCGGGTATTT CCTCAGCAAA TATTTGGGTA TATTTAATTG AAATGCATTT 007120
007121 GTGGCAAAAG TCAACTCCTA CAAAAAAATT GTTAAAATAT TCTTCCTGGA AGTTGTCTCC CAAAGTGACT CACATCAAGT 007200
007201 AGTCTGAATA AATATGGTGA GACTTGGCAC CCTCTGAGGC ATCATTTGCT AGGAAGAAAA TGCTTTTGAA TATCCTAGAA 007280
007281 CTCTTGGAAA ACTTACAGAA CCATTGGCCT CATGCAAGCC CATTGTCCCT GTCCAACACA CCCCCACATC CCCTTTCCCT 007360
007361 CACCATCAGG CACGAAAGTC CTTCCTAAGT CGCAAATGCA AATCTAACTG ACTGGCTTCC TTCTTACAGA CCAACCACAG 007440
007441 CTACTTGTCT TTGAAATTCA ACTTCAAGGA AGACAGAAAA GTCTATTTTT AATCAGAGAA AAACCTCAAA TTGAGTGCGA 007520
007521 ATTACTGCCT AGGCCCTGTT GAATGCACAC TAGAATCACT TTTGAGATGA TCACTAATTT TATGGAGTGA TATACACCAG 007600
007601 AATGAACTTC TAGCCTGCTT TATAATCAAT CAGTTAATCA ACAAGTCTGA GTGGAGCGTG TATGCTTTGC GTTATCTGCA 007680
007681 GTGCGGCCTG AGGTTACGGG AGAAAAAAAT GGCACTGTGT ATTGCTTGAA TGCTCAGGGC TGCGTTCAAC TAATTTTAAC 007760
007761 CATTGAATCA AAATGATCAG GTAGAGGGCA GGAAATGTAG AATGGCTTGA ACAACTACCT CATGAAAACA TGCAGTATGC 007840
007841 GTTTGTAATT CAGCATCTTA AAATGTCTCT TTTGGCAGTA TTTCTTTACA AATGTGGCAA AGCATGATAT CTTTGAGTAA 007920
007921 ATTTTTAAAC TTCACAAAAG TTTCTGAAAA AAATATGTAC AATCAAAGAA AAACACTTGG AAATAAATTC TGTCTATAGT 008000
008001 TTATGCACAT TTAA
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Predicted Small Protein

Name NONHSAT133392_smProtein_6440:6661
Length 74
Molecular weight 8234.5347
Aromaticity 0.027397260274
Instability index 64.1342465753
Isoelectric point 10.5170288086
Runs 13
Runs residual 0.0339372514361
Runs probability 0.0285624991508
Amino acid sequence MSGAENNPTGTRRCGAKCIQKETLLWKPLLTALLPRSQRAGALLLQSCLHTRIHRNERSW
EVLEPGVSKVKRQ
Secondary structure LLLLLLLLLLLLLLLLHHHHHHHHLLLHHHHHLLLHHHHHHHHHHHHHHLLEEELLLLLE
EEELLLLEEELLL
PRMN -
PiMo -