NONHSAT133393
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133393 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2344 nt |
Genomic location |
chr9-:98568376..98570719 |
Exon number |
1 |
Exons |
98568376..98570719 |
Genome context |
|
Sequence |
000001 TTCTTGAGAT TCTAAGTCCC ACAAACATTT ACTGGGGCAG GCGGACCTTG TAGTCTTGTG AGACTATGGA CAGATGAGGA 000080
000081 CTGTCCATGG TTAGACATGA TTAGTGAACA ATCCTATACT GGGAAAACAC ATGCTTAAAT GGGACAATAC TGAAGTATTA 000160 000161 TTTGCTGCAT TCTGGACTTC TTCCCTTAAT CTGCATTTTT TTCTGGGCAA AAAGCCAGAA TGGCCCAAGG CAAAGGTTTT 000240 000241 AAATAGTTCC CAGGAAGCCA CATTCAGACT GCAAAGGCAT CCTACTGAAG GGGCCATGGT GTTCAGAAAG GTAGATGTCC 000320 000321 TCTGGGTCTT GCCCTGACCC CAAGCACAAG GTCTTTCCCC TTCTGGAGTC CCTGCCGGGT CTCTGCTCAG ACGTGGTCTG 000400 000401 CCCTGCAGCT GTTGGGCTGG GAGCTGGAGG GCAGGCAGGC AATGGGTGGA AATCAGGGGA ACATTTCTCT TCAAAAACTG 000480 000481 CTGTTTGAAG GCAGAAACCA GCTGTGCACC TTTCCTAAGG ATTCAGGATG AGGATGTTGG GATTTGAGAA GATAGAAAGA 000560 000561 TCTAAGTCAA AAGCCATTTG AATAAGGTAG AAATATCTTT CTCCTGAAAG GAGGCTAAAC ATAGAGACAT ACCCCAAAGA 000640 000641 CATGAGAAAA TGAGAGTCTT TATACTTGGT GAAAACAAGA AATGAAAGAT GATGGAAAGA TGCATGCAAA TTATCTTCCA 000720 000721 GCTTGCTCTT TTGAAGATGC TCGTCTAAAA ATAAGATCAC GTGGAGGAGA AATGACATGT CTGGTGCTGA AAACAACCCT 000800 000801 ACTGGGACCA GGAGATGTGG AGCAAAATGT ATTCAGAAAG AGACTTTGCT CTGGAAACCA TTGCTCACTG CCCTGCTGCC 000880 000881 AAGGTCACAG AGAGCTGGAG CTTTGCTGCT GCAAAGCTGT TTACATACAA GGACACACAG GAACGAAAGG TCATGGGAGG 000960 000961 TACTTGAGCC TGGAGTCTCC AAAGTCAAAA GACAATAAAC ACACCAACTT TCAGGGCTTT TAACAAGCAC AATCGGGCCA 001040 001041 AACAAATTCT CACTTTGGAT GTAGATCCAC AACATCTTGC AGCAGACGGA AATAGGACTG GGGCAAGAGT TGGTACAAAC 001120 001121 AGAAATACTA AGTTTATCAC GACCAAAATA GGCAATGGAG GGTAAAAGCC CGCAACCTAC TTCAAATATA TCTGAACTGG 001200 001201 TGTTAAAACT AAGCTAGCAT TGAAGAGAGG GATAAAATTC AGGAGCAAGT TTCCAAAGAG ACTCATAAGA ACCCAGAGAG 001280 001281 AGGAAAATCT TTTTCAGAAA ATTCATAAAA GTTAATGAGT CGCCATTCTG ATGTAACGGA GAGAACTTCA GTAATATGAC 001360 001361 CAGTGATGGA GTTGGTGTGA AATGCATAGA CTCCACTATG ACCTGACCGG GTATTTCCTC AGCAAATATT TGGGTATATT 001440 001441 TAATTGAAAT GCATTTGTGG CAAAAGTCAA CTCCTACAAA AAAATTGTTA AAATATTCTT CCTGGAAGTT GTCTCCCAAA 001520 001521 GTGACTCACA TCAAGTAGTC TGAATAAATA TGGTGAGACT TGGCACCCTC TGAGGCATCA TTTGCTAGGA AGAAAATGCT 001600 001601 TTTGAATATC CTAGAACTCT TGGAAAACTT ACAGAACCAT TGGCCTCATG CAAGCCCATT GTCCCTGTCC AACACACCCC 001680 001681 CACATCCCCT TTCCCTCACC ATCAGGCACG AAAGTCCTTC CTAAGTCGCA AATGCAAATC TAACTGACTG GCTTCCTTCT 001760 001761 TACAGACCAA CCACAGCTAC TTGTCTTTGA AATTCAACTT CAAGGAAGAC AGAAAAGTCT ATTTTTAATC AGAGAAAAAC 001840 001841 CTCAAATTGA GTGCGAATTA CTGCCTAGGC CCTGTTGAAT GCACACTAGA ATCACTTTTG AGATGATCAC TAATTTTATG 001920 001921 GAGTGATATA CACCAGAATG AACTTCTAGC CTGCTTTATA ATCAATCAGT TAATCAACAA GTCTGAGTGG AGCGTGTATG 002000 002001 CTTTGCGTTA TCTGCAGTGC GGCCTGAGGT TACGGGAGAA AAAAATGGCA CTGTGTATTG CTTGAATGCT CAGGGCTGCG 002080 002081 TTCAACTAAT TTTAACCATT GAATCAAAAT GATCAGGTAG AGGGCAGGAA ATGTAGAATG GCTTGAACAA CTACCTCATG 002160 002161 AAAACATGCA GTATGCGTTT GTAATTCAGC ATCTTAAAAT GTCTCTTTTG GCAGTATTTC TTTACAAATG TGGCAAAGCA 002240 002241 TGATATCTTT GAGTAAATTT TTAAACTTCA CAAAAGTTTC TGAAAAAAAT ATGTACAATC AAAGAAAAAC ACTTGGAAAT 002320 002321 AAATTCTGTC TATAGTTTAT GCAC |
Predicted Small Protein
Name | NONHSAT133393_smProtein_776:997 |
Length | 74 |
Molecular weight | 8222.481 |
Aromaticity | 0.027397260274 |
Instability index | 62.4438356164 |
Isoelectric point | 10.5170288086 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0489634019046 |
Amino acid sequence | MSGAENNPTGTRRCGAKCIQKETLLWKPLLTALLPRSQRAGALLLQSCLHTRTHRNERSW EVLEPGVSKVKRQ |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHLLLHHHHHLLLHHHHHHHHHHHHHHHLLLLLLLLLE EEELLLLEEELLL |
PRMN | - |
PiMo | - |