NONHSAT133639
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133639 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3940 nt |
Genomic location |
chr9+:102000247..102004186 |
Exon number |
1 |
Exons |
102000247..102004186 |
Genome context |
|
Sequence |
000001 gaatgagtct catgaaatct gatggtttta aaaacaggag tttccctgaa caagctctct ttgcctgctg ccatccatgt 000080
000081 aagacgtgac ttattcctcc ttgccttccg ccatgattgt gaggcctccc cagccattca gaactgtaag ttcattaaac 000160 000161 ttctttttct tcccagtctc aggtgtgtcg ttatcagcag catgaaaaca gactaataca tgtcatttcc ctgtaatgat 000240 000241 ccttaactgt gaggacgatt atatattgaa acctgagtca ttctagaaaa tcattgaata tgtggtggtc gtggggacct 000320 000321 ccaaAAAAGt cgtgatgtat tatttttaat gtgctactgg attgtgtttg ctaatatttt attttcttta tcaatattcT 000400 000401 TAACTTCAAT TCCCCTTTAT CAAACTTTTA CTGAAAGCTT TTCCAACATT CACATTGTTC TAGATATCTT GACATATAGC 000480 000481 AACTTCTGTA CTCTTTTGAG GAATTCATGA CAAcctcttt tacaggtgag aatactgttg cccacagagg tggagtgact 000560 000561 cacacaaagt tctatagcta ctgactgtat agcagagagg ggagccaggg ctgtctgcct cccagttagg gtgaccattc 000640 000641 tggtttgccc tggattgagg ggttttctcc aggctgaggg gtttcctggg acatgggact ttgagtacta aaacagagat 000720 000721 agtcctggac aaatcaggac tgttggtcac cctaCTTAAG TCTACAGCTT TTAAAAAAAA TACTTTATCC AAGTGGATGC 000800 000801 TTCTATTTTC ATGAAAGAAA GCTTGTCCCC ATTAGGATTT GGGCATATTT AGACACAAAT TGGAAGTGCC AGACACCTGG 000880 000881 TCTTTCAAGG AGAACAATTT CCAAATTCCT TTTCTGAGTG CCATACATTC TGCATCTCCC AACCTAGTTT GCTTTGTGCT 000960 000961 TGGCTCTTTG CTCTTCTCCA CCAAGCCCCC CCTCCCCCCG CTCTGCCCAC CACATTTTTC AACATTACTG GTTTTAATTT 001040 001041 CCTTTACCAT CCCCGTTGCA AAAACTTCTT TCCTGATTTA ATTACTATTT CTCTTAATTC AATTTTATGC TCTTGATTGT 001120 001121 CGTTAAACTC CTAAAGTTGT TTCTCCAAAG AATTTAATGG CTAGGCCTTG TGCTTAGAGA TTAATTGTTG TCATTTTGCT 001200 001201 TTCAAGCACA GGTACTTTCT TACTTCTCTT CAGTTATCTT TGGGAGAAAG GAAAGTGACC ATCCTTCTTC CCAGGGCTGC 001280 001281 TCTGAGAACA AACACTGCCG GGGGCTGCCT TTTGAGAGAG AGAGAAAGCC AGACCTCTTA AATTTGTCTT CCACCTTCTA 001360 001361 CTGACTCTAA TCTCAGCATC TGTGAATAGC CAGAGAACCT CTGGCTCCTC AGGTGGGCTC AGGCCATGAA CGGATTGTAG 001440 001441 GGAGGGCTCT AAAAACAGCA GCCCAGGCTT GAGATAGGGT GGCTTTCTGC CAGGAGGGAT TTGCACAGTG AAGAGGGGGA 001520 001521 ACAAGGGCTG GCTCTAGCCT CAAACATCCT GCCTGGCCAA GGTCCCCCAG AGGAACTAAG CCTGTGACTC AAAGGAAAAA 001600 001601 GGAATACTTT TGGTTAGAAT TTCCCTTCCC TGGAATGTCC CTCTTGGGGA TAAACCTACT CCTGAGCATC TTTCTCACGT 001680 001681 TCACTGTACA GTAGCTAAAA GGCTTTGACC TTTGAGTCTT CTCCCTGCAG CCCACAAACT CTTGATTTTC CCACCTCTGT 001760 001761 CACCCCTGGA TCTCCTGTTT TCCTGTGCAG ATCCTTGACA AACAGTGGCC AGAGGTAGAG GAATGATTTC AGGCTGGAGC 001840 001841 TCTGGCAAGC TCCCTTTACA ATCCAGTTGT GTAACTCTGC CCCTGTGTGG GTGAAGCAAC CCTGAAAGgt agaaagcaca 001920 001921 ggctctgggg cgggccttag accctgcctg gcacttaatg agccatgtga tctcgtggct cagctgcctc tgaacctcag 002000 002001 ttccctggtc tgtggataat cagatataga accgtataga agggatgcgg ggctgacttt tatttcatgt gagggttaaa 002080 002081 tgaaagaatt gaagtaaagt attcagcaca gtttcctggc acataagcct taaataaCAA ATATTATCAA CATTGAGTAG 002160 002161 CATTTGGTCC TACATCAGTC ATAGAATCTT CAACTTTTAG GACTGAAAAG GAAACCGAAG TCCTGTAGGC CAACCTTCCC 002240 002241 TCCCCACTCC CAATTTGATT ATGAAATCCT CTATTCAGCC TTTGACTTTG CTAGCAGACC TTTTGTGATG GGGCAGCTCA 002320 002321 CAGCTCTTGG GGAATCCCTG CCTTCTTTGG GCCATTCTGT AAATGTCAAG GAAGAGCTCT GTGTACATGT GTGATGTATT 002400 002401 TAAACTGCTT TCCAGTTGCA GGGAACAGGA AGCCTTTCCC TATTCCCTAT TCAGGTACAA TAATGTAGGC TGCTAGGGAA 002480 002481 CAAGATCGAA CAATTGGAGA AGGCTTTTGT GGCTAACTCA GTGACGTACT TGCAGGTGAG GGTTCCAGAC TCCAGAGTCT 002560 002561 CCCTTTACCT AGTTCTTGGG AGTCTAGTGC AGCTGAAGAC GAGGTACTGC GGATGAAGAG GAAGACGAGG TACTGCGGAT 002640 002641 GAAGAGAAAC CCAGATGATC CAGGCACATT TTATAGACAA GGCCTCAACG ACCCCAAAGG AACCTTTGAA ATCACCCTTT 002720 002721 TCCTGGGTTC ACGACGACTT GTAAACGATA CCATCCATCC CTGCTTATTC ATAGTTATTA AATACCAGAA TAAAGAGATT 002800 002801 AGAGCTCATG AGGTGCTTCG TCCCCATCAC TCGGGCTGCT TGGCTGCATT TATGATGAGA AGGCTCTGGG TGTTTAATAA 002880 002881 AGTATCTGAT ATGTCTAATA AAATCCTCCC ATGGCCCTGC TGATGTTACT ATAATAGCTT CATGTCACAT GCTCTTGTGC 002960 002961 TATTGAGCCA GTACCAGAAC atattttaaa ttcttattat gtctatttaa tttttattta aaGGAAATTT TCAAGGTTTA 003040 003041 AAGCAGGTAC CGAGGTACCT AGGTGTGAAG ACCTAGAAAT GTGCTGTAAT ATTTATCAAA ATAGTAATGG AGTGATTTAA 003120 003121 GGATAGTATA GGAATAAGCA ACTGTGCATT CGTGGCTTAT CTAGTTATAG ATCTGTACTG TTCCCCTAAG AACTGCAATT 003200 003201 TGTGAAATAA TGGCTTCTCA TTGTTATGCC ACATCTATTT ATAAAAAGCT GAGTTTATTC TCAGTGCTCA GTAGtttttt 003280 003281 tttgtttttt ttttttgaga cagagtctcc ctctgttgac cagactggag cacagtggtg cgatctcggt tcactgcaat 003360 003361 ctccgcctcc ccggttcaag caattcttat gtctcagctt cctgaatagc taggattata ggcgtgagcc actacgccag 003440 003441 gcCTCAGTAC TTAAAAGATT TTATCTTACT TTAATGATAT ATTTTATATA AGCTTCtgga aggttagagc aggattggac 003520 003521 cttagaactt aatttgacca attccttcct gacagtaatg acaaaattga ggcccagaga ggggaaggaa tttgcccaag 003600 003601 gtcatacacg taataaaggc agaactggga ttcaagccta gatttttaca cttcatgctc ttgctacCAT AATAAGAAGC 003680 003681 CCTTAAAATA CCTATACGTA CCTGGCTTTC ATATACACAC CTCCATGAGA GGGAGGCAAC GTGTACACGT AAACATGCTT 003760 003761 GTGACAAGGG AATTGGCAGT GATAGCTGTT GTCACTGGCC GCCAGGACCC ACATGGCCTA TCTGGTTGCT TAGGTGGCTG 003840 003841 TTCTCTTTCC TCTCTCCCTC TTCCTCTTGA GTCCAGGTGT AACTAAGGCA TTATAAAAAA CAGACAAACC TTGACATCGG 003920 003921 AAGAGCTGAC TTTCtttttt |
Predicted Small Protein
Name | NONHSAT133639_smProtein_3209:3412 |
Length | 68 |
Molecular weight | 7629.6728 |
Aromaticity | 0.194029850746 |
Instability index | 55.7537313433 |
Isoelectric point | 6.50714111328 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0475279200769 |
Amino acid sequence | MASHCYATSIYKKLSLFSVLSSFFLFFFFETESPSVDQTGAQWCDLGSLQSPPPRFKQFL CLSFLNS |
Secondary structure | LLLLEEHHHHHHHHHHHHHHHHHHHEEEEEELLLLLLLLLLEEELLLLLLLLLHHHHHHH HHHHLLL |
PRMN | - |
PiMo | - |