NONHSAT133813
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133813 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1753 nt |
Genomic location |
chr9+:108006929..108153680 |
Exon number |
2 |
Exons |
108006929..108007185,108152185..108153680 |
Genome context |
|
Sequence |
000001 AGGAGACGCG TAGCCGCCGT CGCCGCCGCC GGGGGATGTG GCCGGCGCCT GCCTCTAGCC GCGCCGCCTC TTGAGTACCA 000080
000081 gccgccgctg cagccgccgc cgccgccTAG CCGTGCGGTG CCAggccgcg ccctccccgg gcgcccgccg gcTCGCATGC 000160 000161 CGAGGGGCTC CGGGGCGTAG CTGCGCGCCC GGCGCCGCCT CCGGGCTCCT TCGGCCCCGC CATGGGCTGC TGCAGCTCCG 000240 000241 CCTCCTCCGC CGCGCAGATT AAGTAATGCT GGGAGGAATA AAGAAGGGAC AGAAACATGG AACATAAAGC ATTGAAAATT 000320 000321 CCGGTGCTTG GGCTTCGGCT TCAGAGTAAC GTCAGTGGCT TAGGGTTAAA CGGCCATTTT ATTCAAATGC TTGCTATACA 000400 000401 ATCTGAAAAC ACACTGGCAG GTGCTCCTCT CCTTGGCAAT TCATTGAGTA TCCAGAGTTC TACGATGTTT AACTGAAGAA 000480 000481 TTGGCTAATG TTTTGATCCT CCAGTGTGAC TGTTGTTTTT GTTTGGGGGT GGGTTTGGGG TTTTTTGCTT TTTTATTCCT 000560 000561 GAAGCTTACC AGATATGAAT GGCTAATACT CCATTGTTCT GCTTGTTGTA ATGGTGAATG CTTTAAGAAA AAAAAGTGTA 000640 000641 ATTTGCTAAG AATAATTCAT GATCTGTTTA TGCGATAACT CCTTTTTGTT ACAATTTTTT TAAAAAAAGC TATTTTTGTT 000720 000721 AATGTAAAGT AAATATTTCA GAGCAAATTT TTTAAACTTA TTGCACTAAA TACAGGCTCT GTACaaaaaa aaaaaaaaaa 000800 000801 aaaaaGCCTC AGCATTTTAT CATTCCATGG AAGGAGAATC TTTTGAAAGA AAGCATTGCC TCCTACCAGA ACTAGACAGT 000880 000881 GAATTAGATC GGTATTATGG AAATGCATAC AAGTAATGTC ACTAGGGCTT AATAAGCAGC CGTTTGCTAA TGTGCTTCCT 000960 000961 TTCAAAGGGT TGGACCTTTA AATTGCTGCA AAAGGTAAAT TGTATTTTTT TTTAAGTATT GGTGTTCTTT ACTCTAGCTA 001040 001041 GGCTAAAATT TGCTAAATGC CTTGGTTTCT TTTAAAAGTT CATGTAATAT TTCTGATTTT TCAGAATATT TGCAATAAGA 001120 001121 GTCTGGATTT TAAAAAACAC ATGCATACAC ACAATTAAGA GCTCATGTCT TAGCAAGATC TGGGAAACCA ACATTGCGAG 001200 001201 AGTAGCTATT TTGAAAGAAT AATTCTCCAG AAGTTAACAT CTAATATCTA GTATCACCAA ACAGTATCGC TGTTCTCTTT 001280 001281 TATTCATTTG AAATGAATAT AATTATATAA CTAACAATTG TCCAAATAGA TGAGAGAGCA AATCATGTGA GAAAATTCAG 001360 001361 AATACCATCT GTTTCATAGC CGCACAGATT TTGGACTTTC ACAAACATTG GGAACTAAAT TTAGAATTGG CAAAAGTCTA 001440 001441 GAAGATGGGT ATCAAAACAG AAGACATTCC AGGAGCTAGC AATTTTAAGA GGTGTCCCTC CAAAGTGACC TGATGGAAGT 001520 001521 CCTGAACTTG GAAATTAGGT TCTACTCACT TGGACATCCC TGCATCATGG ACTGTTGCTG CTCCCTGTTC CATATGCTCG 001600 001601 CAATCTCAGC TATTTGGAAG CTACCAGGAA TGCTTTCTAA TTATCATTTG CAACTAGAAC TGTAATCAGA AAGAAATTTT 001680 001681 GTATTTTTGT ATAACTTGAT TGTGTGCCAT TTTATATAAC AGGTCCTGTT TTACAAATAA ATTTTGTTTT ACT |
Predicted Small Protein
Name | NONHSAT133813_smProtein_296:475 |
Length | 60 |
Molecular weight | 6262.2423 |
Aromaticity | 0.0338983050847 |
Instability index | 44.7677966102 |
Isoelectric point | 8.38519287109 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0373287726228 |
Amino acid sequence | MEHKALKIPVLGLRLQSNVSGLGLNGHFIQMLAIQSENTLAGAPLLGNSLSIQSSTMFN |
Secondary structure | LLLLLLLLLEELLEEELLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLEEELEEEL |
PRMN | - |
PiMo | - |