NONHSAT133813

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT133813

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1753 nt

Genomic location

chr9+:108006929..108153680

Exon number

2

Exons

108006929..108007185,108152185..108153680

Genome context

Sequence
000001 AGGAGACGCG TAGCCGCCGT CGCCGCCGCC GGGGGATGTG GCCGGCGCCT GCCTCTAGCC GCGCCGCCTC TTGAGTACCA 000080
000081 gccgccgctg cagccgccgc cgccgccTAG CCGTGCGGTG CCAggccgcg ccctccccgg gcgcccgccg gcTCGCATGC 000160
000161 CGAGGGGCTC CGGGGCGTAG CTGCGCGCCC GGCGCCGCCT CCGGGCTCCT TCGGCCCCGC CATGGGCTGC TGCAGCTCCG 000240
000241 CCTCCTCCGC CGCGCAGATT AAGTAATGCT GGGAGGAATA AAGAAGGGAC AGAAACATGG AACATAAAGC ATTGAAAATT 000320
000321 CCGGTGCTTG GGCTTCGGCT TCAGAGTAAC GTCAGTGGCT TAGGGTTAAA CGGCCATTTT ATTCAAATGC TTGCTATACA 000400
000401 ATCTGAAAAC ACACTGGCAG GTGCTCCTCT CCTTGGCAAT TCATTGAGTA TCCAGAGTTC TACGATGTTT AACTGAAGAA 000480
000481 TTGGCTAATG TTTTGATCCT CCAGTGTGAC TGTTGTTTTT GTTTGGGGGT GGGTTTGGGG TTTTTTGCTT TTTTATTCCT 000560
000561 GAAGCTTACC AGATATGAAT GGCTAATACT CCATTGTTCT GCTTGTTGTA ATGGTGAATG CTTTAAGAAA AAAAAGTGTA 000640
000641 ATTTGCTAAG AATAATTCAT GATCTGTTTA TGCGATAACT CCTTTTTGTT ACAATTTTTT TAAAAAAAGC TATTTTTGTT 000720
000721 AATGTAAAGT AAATATTTCA GAGCAAATTT TTTAAACTTA TTGCACTAAA TACAGGCTCT GTACaaaaaa aaaaaaaaaa 000800
000801 aaaaaGCCTC AGCATTTTAT CATTCCATGG AAGGAGAATC TTTTGAAAGA AAGCATTGCC TCCTACCAGA ACTAGACAGT 000880
000881 GAATTAGATC GGTATTATGG AAATGCATAC AAGTAATGTC ACTAGGGCTT AATAAGCAGC CGTTTGCTAA TGTGCTTCCT 000960
000961 TTCAAAGGGT TGGACCTTTA AATTGCTGCA AAAGGTAAAT TGTATTTTTT TTTAAGTATT GGTGTTCTTT ACTCTAGCTA 001040
001041 GGCTAAAATT TGCTAAATGC CTTGGTTTCT TTTAAAAGTT CATGTAATAT TTCTGATTTT TCAGAATATT TGCAATAAGA 001120
001121 GTCTGGATTT TAAAAAACAC ATGCATACAC ACAATTAAGA GCTCATGTCT TAGCAAGATC TGGGAAACCA ACATTGCGAG 001200
001201 AGTAGCTATT TTGAAAGAAT AATTCTCCAG AAGTTAACAT CTAATATCTA GTATCACCAA ACAGTATCGC TGTTCTCTTT 001280
001281 TATTCATTTG AAATGAATAT AATTATATAA CTAACAATTG TCCAAATAGA TGAGAGAGCA AATCATGTGA GAAAATTCAG 001360
001361 AATACCATCT GTTTCATAGC CGCACAGATT TTGGACTTTC ACAAACATTG GGAACTAAAT TTAGAATTGG CAAAAGTCTA 001440
001441 GAAGATGGGT ATCAAAACAG AAGACATTCC AGGAGCTAGC AATTTTAAGA GGTGTCCCTC CAAAGTGACC TGATGGAAGT 001520
001521 CCTGAACTTG GAAATTAGGT TCTACTCACT TGGACATCCC TGCATCATGG ACTGTTGCTG CTCCCTGTTC CATATGCTCG 001600
001601 CAATCTCAGC TATTTGGAAG CTACCAGGAA TGCTTTCTAA TTATCATTTG CAACTAGAAC TGTAATCAGA AAGAAATTTT 001680
001681 GTATTTTTGT ATAACTTGAT TGTGTGCCAT TTTATATAAC AGGTCCTGTT TTACAAATAA ATTTTGTTTT ACT
[back to top]

Predicted Small Protein

Name NONHSAT133813_smProtein_296:475
Length 60
Molecular weight 6262.2423
Aromaticity 0.0338983050847
Instability index 44.7677966102
Isoelectric point 8.38519287109
Runs 11
Runs residual 0.0419841393251
Runs probability 0.0373287726228
Amino acid sequence MEHKALKIPVLGLRLQSNVSGLGLNGHFIQMLAIQSENTLAGAPLLGNSLSIQSSTMFN
Secondary structure LLLLLLLLLEELLEEELLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLEEELEEEL
PRMN -
PiMo -