NONHSAT133938
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133938 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2753 nt |
Genomic location |
chr9-:111892575..111895301 |
Exon number |
1 |
Exons |
111892575..111895301 |
Genome context |
|
Sequence |
000001 TTCTGGAATT AAGTTTACTG TCTATATTCA GGATTTTGTG CATAAGAGAC GTGACCACTG AGGTTGTGTG TCATTCTTAT 000080
000081 CTCTACTCCA GGGGTCAGCA AACTTTCTCT GTTAAGGGTC AGATAGTAGT TTTTTGGCTT TTCAGTCTCT GTTTGGCTCT 000160 000161 GCTATAAACA ATACATAAAT GAATGAGCAT GGCTATGTTC CAATAAAACT TAATTGACAC TGAACTTTGA ATTTCATGTA 000240 000241 CTTTTCAAAT GTCACAAATG TTTTCCTTTT GATTTTTTTC AGAAAGCCAT TAAAAAAATC CAAAGACCAT TCTTAGCTTG 000320 000321 CAGGCTGCAC AAAAACAGGA AGCAGGCGGG GTTTGCTTAT GGACTGTGGC TTTCCCACCC TTGTTCTTAG ATAGGGACAC 000400 000401 ACCAATATAT CATGATTAGT TGTAAAGGAT ACTGCCAGTA ACATATTATT ACTGGTTAGT TGTAAGAATA TCAAAGTTAG 000480 000481 TGAATAATTT GCTTTTAAAA TAAATTATTG TTGATTTATT TTTATAAATA AATGGCACAG GGCATCTCAT GCTCTTGCAT 000560 000561 TCTAATATAT TTTCTGGAAT TGATGCAAAA GTGGTGGCAG TAAAGTACAG AGCCGGCTAA GCAGCAGTTT TGTCTTAAGT 000640 000641 AACTGTGGTG ATCATGGACA ACCATTGCGC TGAACTGCTC TTCATGGTAA GGATTTCAGT GTTTCAGAGT AATTCATTAA 000720 000721 CCTAGAGATG TTTTAAAAAG TTGTATCGGC CGGGCGCGGT GGCTCAAGCC TGTAATCCCA GCACTTCGGG AGGCCGAGGT 000800 000801 GGGCGGATCA CGAGATCAGG AGATCGAGAC CATCCTGGCT GACACGGTGA AACCCCGTCT CTACTAAAAA TACAAAAAAA 000880 000881 ATTGGCTGGG CGTGGTGGCG GGAGCCTGTG GTCCCAGCTA CCCAGGAGGC TGAGGCAAGA GAATGGCGTG AACCCGGGAG 000960 000961 GTGGAGCTTT CAATGAGCCG AGATTGCCCC TCTGCACTCC AGCCTGGGTA ACAGAGCAAG ATTCCGTCTA AAAAATAAAT 001040 001041 AAAATAAAAT AAAATAAAAT AAAATAAAAT AAAATAAAAG TTGTATCAAA ATCTGCTGCA CCATGGGAGT GTTTTACACA 001120 001121 TGTGATGTGG CATCTACCTT ATGTACCATA ATGGAAAAAT GTTTGAGAAC CACTGCACTA GGCCAAAGGC TGGGATGTGT 001200 001201 ATACTTTGCT GCCGTGTATA ATTGTATGTC CTTGTTCTCT AAATGGAATT GGTTATGTTT AGTGAACAGT TAGGTGGTTC 001280 001281 TCCGTGTGTT TATATACACA GACGATCCCC GAATTTGGAT GGTTCAACTT AAGAGTTTTC AAACTTACGA TGATATGAAA 001360 001361 GTGATATACA TTTGATACAT TCCTACAACT TACAATGGGG TTATGTCCCA TAATTGTTTT GACTTATGAT ATTTTCAACT 001440 001441 TACAATTGAT GGGTTTACTG AGACATAACC CTCTTGTAAC TTGAGGAGCA TGTGTATATT TGTACATACA TGATGGTGTG 001520 001521 TGTTTATACA CAAAGGCCTG AATATACACA CCATGAGCAT TTGAAGGTCT TTGTCAAGGT TGTTTCTGTT TCTGATCTCT 001600 001601 TGCCTACTTT AAAACCCAAG AGGTAGAACA TTATGCATAT TACAGGCAAA ACTATGCTTG AGTTTATAGC AATGTAGTTT 001680 001681 GTAGAAAGGA TTCCTGGATG TTTTACTAAG CCTTTCCTCC TCCATTCAAC ATTATATGAA TTGTTAAGAA CATATAAAGT 001760 001761 ACCACTGTTG AATGTGACTT TTCTATACTG TTAGTTAAGA AACCAAGACT AGTGTTAGCT GAGTAACTGG CATGTTGATG 001840 001841 CAACCTATAC AGGTTTTGTA TTTAATTAGG TTCCTTATTC AGTTATTCAA GTATCCAGTT ATTTAGTTTC AAGGTAGATT 001920 001921 TCTTTGTTTT TATATTTAAT AAAAGACTTG CATATAAGTT CCTCTTCATG AAAATAGTGG CTAGGCTAGT GTGATTTTAA 002000 002001 GTATGTCTGG CAACTCAAAA TGTAATGGAT TCATCAAGCT ATTTGGGATT TTTAACATAA AACACACTGC TGCTTGATTA 002080 002081 ATGTGTTCAG TTTTCCCCTG GATATTTGCT ATTAGGCTGA TAGCCATTTG GTTGGATTCT TCTGGAGAGT AATTGATTCT 002160 002161 CTAAGGTAAT GGGGTGCTGC AGTGGGTGTA GCATTCACCC AGGTCACTAG AATCCTACCT GTTTCATCAC ATAGAAGGCC 002240 002241 CTGGCCATGG GGAAGAGTGA ATGCAGCTTC TCCGGATGCC TTATTTCCAC AGACATGCTG ATATGCTGGA ACAGTCTGGC 002320 002321 TCCAGGAGTA TTAATATACT TTTTTGAGAC TGTCTACAAA ATCCTATTTT GTAAAAACTA TGCCTTTACA TAGACATTGA 002400 002401 TAGGTTATAT TTGTTTTATA ACAATTGTGT ACCTAATGTT TGTGATTAAT TTTGAGATTT ATGTATATTT ATAAGCCTAT 002480 002481 CTTATGTAAA TTTTTACTCT AAGATGTGTG GCACATTACT AATAAAGACG TGGATTTCTA TTTATGTAAA GTAATTGTAG 002560 002561 CAATATTCCT AGATGCTACC TAAATGATTG TTCTGTCCAT TTGCCATCAC AAATACTTTT ATCTTTGGAT GATTATGTTA 002640 002641 GTCAGAATAT ATTAATTAGA TTTAAACTTT AAAATAAGAA TTACAACATA GTTTGAAATT CTTCCTGTTG AAGTAATTAA 002720 002721 AGTTAGTTTA TAATTCCTAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT133938_smProtein_2246:2392 |
Length | 49 |
Molecular weight | 5456.4184 |
Aromaticity | 0.1875 |
Instability index | 42.325 |
Isoelectric point | 5.92694091797 |
Runs | 8 |
Runs residual | 0.00109649122807 |
Runs probability | 0.0638910969794 |
Amino acid sequence | MGKSECSFSGCLISTDMLICWNSLAPGVLIYFFETVYKILFCKNYAFT |
Secondary structure | LLLLLLLLLLEEELHHHHHHHHHLLLLLEEEHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii |