NONHSAT134012
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134012 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3586 nt |
Genomic location |
chr9-:115138564..115142149 |
Exon number |
1 |
Exons |
115138564..115142149 |
Genome context |
|
Sequence |
000001 TGACAATCAG GCTCCTGTCG GCGCCTAGCG TCTGGGCAGC GTCAGCCGCT ACGTCCACCT TTTCCCTGTC TCTAGGGGTT 000080
000081 TCTCCTCGCG CCGCTGTGTT CCAGCGCCGG CTCCGAGCTG GGAGGGTGAC TGAGCCCTGA GCTTGGGCCC TCCGAGAGGT 000160 000161 GCGTTAGCTC TGGGTCTTCT TGCCCCTACG CCCGAGCCTG GCGTTCTCTC GGCCCCCTCT TAGGAACGCT AGCCCTGGGC 000240 000241 AGAAATTGCC TTTGTGGCTG AAGTCGGCCA GCGTCGCGTT TCCACTCTCC CGCCGAATCT GGACCCAAGC CAGCCTTCCC 000320 000321 TTGTGCATCG GTAGATAGCT TGTGTTAAGG CGCCAGCTTC TTGGAACAGA GCTCTCTGCA AAAGTCGCGC TGAAGAATTC 000400 000401 ATAGTCAAAA GCTGAACTTG CAGAAGTTTC TACTTCTGGA ATGAGTGTTG AAATGAGATC AATTCTGACA TTCAGTTTCG 000480 000481 CTTTTGGGAT TATGCCTTGG ACTAACTCAG CTACTCTGAT GAGCTAAAGA CTGTAGTATA TTTGAAGGAA GACACGAGGA 000560 000561 ACTGTTTTGT ATTTTGTAGG GATAGAACAG GACCTTGAGG AGATTATTAT ATGAAGACTA GTTAAAGAAA CTAGCCTGGA 000640 000641 GATGGCTTAT GTACTCTCTC Ctttgttttt gttttgtttt ttgagacgga gtctcgctgt cgcccacgct gaagtgcagt 000720 000721 ggcgcggatc tcggctcatt gtaacctccg cctcccgggt tcaagtgatt ctcctccctc agcctccgga gtagctggga 000800 000801 ctacaggcat gcatcaccac gcctggctaa tttttttgtg tttttagtag agacggggtt tcgccatgtt gggctggctg 000880 000881 gtctcgagct cctgacctca aatgattggc ccgcctcggc cttccaaagt gctgggatta caggcgtgag cctccgcgcc 000960 000961 cggccTctct cccctttgtt atgggcccta aatgactcta tttcctcctg catatcacct gcccgactcc tgtaggcatt 001040 001041 tgaattgatg attcatgATA CGGTCTTTAG AGGCTCCAGA GGAATTTGCA AATTATTATC ATCCACTAAG TGATTGCTGA 001120 001121 TTACCTGAGA TACAGCAGCT CAAAAAGGAC AAGGTCTCTG CCTATGGGAG GTATGAGTAG CCAGTGTGTT CTTTAGACTG 001200 001201 TTGTTAAGCA TTAGGTGTTT TAAGAAGAGT GTTGATAGAG ACTGTTAGAT GAAAATAACT TACTCTCCTC TCATCCTTAG 001280 001281 GAGCACTTGC TGAAGCGTGT ATATATCTGT CGAATAGAGT GAATTCTTAG TAACGGGGTG ACATTTCCTT CATATCATCT 001360 001361 AAAATGTTCT CTCCTTTTTG AAAGCCACAA TATCTTCAGT CTGTTAGAGC CTCCTTTCTT GAATTTGTGT GCTTCTATTT 001440 001441 CCATTTGTTA CGGAAAGAGA GCTCAACGAA GAGGCAAAGC AAACAAAAAA CCTTTGCCAA TTTTTCAGTC ATAACGATAT 001520 001521 TTTGTGAGCC TAAATACCTG TACTTACACT ATTTTTATAC TTTGCGATGG CTTTCACAGA AGGCAAATAT ATTCCTAAAT 001600 001601 TATTAGAGGT AGTTTTACCA AGCAAGTTTA AATCCATTGT ATTCAGTACT TTGACTAGAG TTCATTTAAA GTGTGATTTG 001680 001681 GAGTTACCCA TGACCTTCTA CCCCATTACC TTGATTAACC TAGTGTTAGA TTAATGCTAG AGGTGAGGAA TGGGTGAAGG 001760 001761 AGAGGACTTG TGAACATAAT TAGATCTTCA TTTTGGAAGG TGAATAATTT TGGCTTAgaa cacttctgac tgcagcatga 001840 001841 agaatagttt gtgagtagat aaaggcacag aagccattta aaagcccata gtaatgtaat gtgtaagaaa agtagtaacc 001920 001921 tgaactaagg cagtaatagt agaaatgaaa agacatactc aagatatgga acctggcaga tgtaactaat gattagatgt 002000 002001 aggagcaaag ggggaagatg gtatcagtgg tgaccttcag atttctggtg taaagtcctg ggaggatggT GATAACACAG 002080 002081 TAAAGAAGTG AAAACAAATG GTTTGAAAAA TAGATGTCTT GAAAGTCAGG TAAGTCTCAC TCATTTCACC CCTTCTCAGC 002160 002161 TTGATAAAAC TACCTAAAAA TGCAACAGTT TCCTGACAGA CTACTGGTTA CAACACATTC TCCCAACCAA TTTATATCCC 002240 002241 TTAAGTTTTG GTTATATGCA ACATTAATGT AATTTGGCTA ATTTAAACCA AATTAAAGGG GTTGGAGAAT TTAGAAGAAT 002320 002321 TCTGGGATAG TTTATATAAC TTAAGGAAGA GCTGAACAAC TAAGCTTGAC AATGGGAACT AAGGTGCTTC CATGATCCTC 002400 002401 AGCAGCATGA TCTTTCTAGA ATGCATTGTA GGTGGCTTCC CTGTCTTTTC TGTGTATCTG TTCAAGCTTC AAATACTAAG 002480 002481 ACAGTCTAGT ACAATGTGTT TCGttttgtt ttgttttttt gagataagat cttgctctgt cacccaggct ggagtgtagc 002560 002561 agcatgatca tggctcactg tagcctcaac ctcctgggct cagccaccca agtagccagg accacgggca tgtgccacca 002640 002641 cacctggcta attttacttt ttatagacac aggggtctca ctatgttgcc caggttggtc ttgaactcct cacctcaagc 002720 002721 aatcctccca ccacacagcc ttccaaggtg ctgggaAATG TTTCAACCTG TAAATTAGTT GGCCATGGCC AGGGACACAA 002800 002801 GTGGATATGG ACAATGGGGA AGTAACACAA CATTGCATAC CTACCTACCC CAGGTCATGG AAGTTGCGTA AATGTAGAGC 002880 002881 AAGTAAATTG GCATTCATAA TTCTGGGAAG AAAGGGGTCA TAAAACTTTT TATTTCATAG GGCTtgtgat ggttaatact 002960 002961 gagtgtcaac ttgatggtat tgaaggatgc aaagtattgg tcttgggtgt atctgtgagg gtattgccaa aggacattaa 003040 003041 catttgagtc agtgggctgg gaagggcaga cccaccctta atctgagtgg gtaccatcta atcagctgcc agtgaatata 003120 003121 agacaggcag aaaaacctga aaagatgaga ctggcctagc ctcccagcct acatccttct cctgtgcgtt tatccccttc 003200 003201 ttgccctcca acatcagact ccaggttcag tttcgggact tggactggct ctccttgcac ctcagcttgc agatggccta 003280 003281 ttatgggacc ttgtgatcat gtgagttaat acttaatagg ctgggcgcgg tggcttatgc ctgtaatccc agcactttgg 003360 003361 gaggccgagg caggcggatc acaaggtcaa gagatggaga ccatcctggc caacgtggtg aaaccccatc tctactaaaa 003440 003441 atacaaaaag tagctgggcg tggtagcaca cacctgtagt cccagctact cgggaggcta aggcaggaga atcgcttgaa 003520 003521 cctgggaggc ggaggttgca gtgagcggag accacgccac tgcactccag cctggtgaca gaccga |
Predicted Small Protein
Name | NONHSAT134012_smProtein_641:793 |
Length | 51 |
Molecular weight | 5667.6961 |
Aromaticity | 0.1 |
Instability index | 67.292 |
Isoelectric point | 10.6399536133 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0358103201241 |
Amino acid sequence | MAYVLSPLFLFCFLRRSLAVAHAEVQWRGSRLIVTSASRVQVILLPQPPE |
Secondary structure | LEEEELHHHHHHHHHHHHHHHHHHHHHHLLEEEEELLLLEEEEEELLLLL |
PRMN | - |
PiMo | - |