NONHSAT134373
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134373 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3991 nt |
Genomic location |
chr9+:117031087..117036510 |
Exon number |
2 |
Exons |
117031087..117031574,117033008..117036510 |
Genome context |
|
Sequence |
000001 atgcctgtgg tcccagctac ttgagaggct aaggtgggag gatcacttga gcctgggaga tcaaggctgc agtgagctgt 000080
000081 gattacccca ctgcactcca gtctgggcga cagaatgaga ccctgtttca aaaaacaaac aaaaaaagtc cttagaacag 000160 000161 tacagaacag tacagttagt tattaatagg atgatggtGT TGGTGCTAAT TGTCCTCCTG TCCTGGCGTG GGAGAAGAAG 000240 000241 TCCGTGGACA AGGCTTACTT GGAACAGGAG CTCTGGTTGG TGTTTTACGA TTTCTCTGTG GTCCCTGGGA AGAAGGACCT 000320 000321 TCCCCAGCTC CTCCTCCCAC ACCCCAAAGT CAGAGCTGGT GGAAACAGGA AGGGGTGTCG AGAGCTGGGG CTGGCCCTAC 000400 000401 CCACCCGCAA GGACTTTTGT TCGGCTTCTC CTAGGGTGAC CTTGGACCCC TGGGCACTCC TGGGGAGCAG GGCCTCATTG 000480 000481 GGCAACGGGG AGAGCCAGGC CTTGAGGGTG ACAGTGGCCC CATGGGACCT GATGGGCTGA AGGTAAGTGC CCTTTTAGGG 000560 000561 CAGGGCCTGG GGACCCCGGC AGGGCATTGC TTTCCCATCC AAGACCTAAG TCTCCTCCCA GAAACACTGT GTTCCCATAG 000640 000641 AGATCTGAGA TGACAGCTCC AGCTCCCATT GACAGCAGCT TGGGGAAGGG TCAGCAGTGT CCAGCAGCCA CCTCCCACCC 000720 000721 TGCCCTCTGC ACTACCTGCT CAGGTGGGAC CAGGGCCATC ACCACCTTCC AGTCTTTCCT GCTACCCTTC TTAAAATATC 000800 000801 AGCTTCTCTT GGCTAAGGGT GATTCCTGAG CACCGGCACT ACGCCAGGCC CAGAGCCAGA GTCTTTGGTC TCTGTTATCT 000880 000881 TCCAAATATT CTAGAAGGTC AGGAAAATAA TAATTACCAC CAATGACTTA TAagccacaa tttagggagg actagtcaca 000960 000961 cacataccag gtacaacgct aagcccttta ccagctggat ccataggaca acggaagttc tgtctttaga tgaggaaact 001040 001041 gagactcaga gtggtgaagc aacttgccca aggacacacc gctagcaact ggcacatcca ggacccaaat ctgggcccgt 001120 001121 ttggctccaa agcctctgct cactctgctg taccatgcac ccattctaaa ggcgaagagg ctgaggctca gaggaaggca 001200 001201 tagatacatt caggacctat ggctatgagt gaggatccaa aattcaaacc cacggctcac aggtgccaaa gcctgctggc 001280 001281 ccaacttgac cctgctgctc cCTGAGAGAC TCCTGTCAGC CACAAATGTC AGGACTCTGA AGAGACACCT TAGCTCACCT 001360 001361 GAATTGCAGG TGGGCAGGCG GGCACCTCCC TCTGACTCTC CAGACCCATC TCCAGGCCAG TCCCTGGCCT CCGTCTTGGG 001440 001441 CCCCGCTCTG ACCCCACAGG TGGGCTTTCC CCGAGGCTGG CCGGTCACCC TGTGCAAGTC AGCTCCCCAG CCCAGGTTCC 001520 001521 TAAGGGCCAT GCCCTctcgc ccacctactc tccaggtgac ctcagagaag cagacccctt ctctgaacct cagtttcccc 001600 001601 atcCACAGGC TTCCGCCCAC CCTCGTTACC CCCTCCCCAC AGTCTCCCAG GGTGCCTTGG CGACCGGCCC CTGCTGACTC 001680 001681 CTCACATTTT CTTGCAAGAG CGAGAGCACC CCCTGTCTGT CATCTGCCTG ACTCCTCTCC CCCAACCCTG CTGCATCCAA 001760 001761 GCGTACAGCC GAGTCCCAAG ACCCGGAGCA TTTGACAGCT GCTCCACACC CTTTGCCAGT GCCTGCTACA CTGGGTGGTG 001840 001841 ATGCTGATGA AGGTCatggc taaaatgctt tgggcacttg ccatgtgccc agtgccaccc acccaaaggg ctttatgtga 001920 001921 attaacccat ttaataatta atgttcccag caactctccc aagcttgata cattaccatc ctcactagac ggatgaggaa 002000 002001 actgaggcac gaagCAGCAG CCTTCTCACT CCACTCTGGG CGGCCACCTT TCTTCTTGGA AAGTCCACTG AGGTGGGCGG 002080 002081 GAGGGGGTCT TCCAGCCTGG GTGCCTCATG CAGTCTTCTG CCTCCACCTT GCATGGCTTT TTGGCCCTGA CTTCATCCTC 002160 002161 TTCCCCTCCC TTCAAAGCCA ATTCTACCTG AGTCCTTGTG CTCAAATGCA CAGCATCTTC CCTGGTCTTT ACATGAATCC 002240 002241 CAGGAGAGAC CCATTTTCTT AAGGTGTTTG TCCAGGAATC ACCCCTCATG GTGAAAACTG CGTCTCGAat atgcacagca 002320 002321 cttcatagtt tatagagtgc ttttacaccc gttatctcTT CGCTGATGTC CAGCTGACAG TGATGATGGT GGTGGTGACC 002400 002401 aataatagtt agcttttatc cagcattcac atgccagaca cactgctaag ctatttacat ggtttatctc tttcaatcct 002480 002481 tgcagtaatc ctttgatcct gattttacaa acgaggaaac ttgcccaggg tcacacaact attcagtagc ggtagcaaga 002560 002561 tttgaactta ggcagcataa cccgagggtT GAGGGAGGCA TCGTCCCctg agcagagaat cttggaatta gaaggagcca 002640 002641 gaaccccagg ttcacacagc actgactcac tcggtggtat tagggagtct ccacctgtct gcacttcagt tgtcccatct 002720 002721 gtaactgaag agggttaagg aaggtgactt gcaaggctcc tctgagcact ggcaGATGTC TGAGGATTTG GGGCATCTCT 002800 002801 AGGAACCCCC AGAGACTGTT CTGCATGAGA TTCACAAGGA CGCCCACCCC AGGGGTCCAG TTAGCCCCTG GAGTGTGGTC 002880 002881 TTAGGCAGAG CCCAGGTGAG GGCCCTTTGT TGAAAACCCG ACTAGCCACC TGGAACAGGC TGTCTGCCTC TGAGAGGAGA 002960 002961 ACAGGTGGCC AGGACGACAA GCCAGAAATG GAATCCCAGA GCCAGAGGAG TCTGCAGGAG AGTTATTCAG GCCAGCCCCC 003040 003041 TGTCTTCATG CCAGGCTGTG CTTAGAAGCT GAGGCTCCCA GCAGGAAGGG ATCCGGGCAC AACTTTGTGC CCAGATCTGC 003120 003121 TCTACATTGG CCCACGCCTC AGCTCGGAGT CTTCTGCCTT TATCTGTGCC ATCTCTGGAC CGCTCCATTG GAAAATCTTC 003200 003201 CCAACTGAAC TAGAAACTGC CCCAGCAACT CCCTCACACC CACCTCCTGC CCCAGAGCTC AGGCCTCAGC AGGCCCAGCT 003280 003281 TGAAGCAATG AGCAATCATG AGTTGCTTTC TTGAGCCTCT CTTCTAGGCA GGGCCAAGCC CCAGGCTCCA GCttcatgcc 003360 003361 ctctgcttcc tgtgctctct ctcctctgga tgcacaccag tttatcagtg tccctcgtaa accttggcac tgggggacag 003440 003441 aactgGTAAA GACACACTAT GCTTTTCCAA GCCTGCTCTT CTCGCCCATC CCTTCCTGAT GGACGCCGCC CCTCAGCAGC 003520 003521 CATGCCCGTG CTGCACTCCA CACCTGCTCT GCTCACGGTG ATGAGGGTGA CAGCCCACGC CCCATCCTGG AATCCTGCAT 003600 003601 GCCCCATCCT GGAACCCCAC CTGCCCCCAA TCTCTCTCAG AGTACGCAAA GATTACCGTG ATGAGATAAG GCAAGCTTAG 003680 003681 AGTGACACTG ATTGCTTCAA AACCATAAAA AGCCCATGCC Agcctggtgc agtggctcac acctgtaatc ccagcacttt 003760 003761 ggaaggccaa agtgagtgga tcatctgagg tcaggagttc gagaccagcc tagccaacat ggtgaaaccc tgtctctact 003840 003841 aaaaatacaa aaattagcca ggcatggtgg cgcgtgcctg cagtcccagc tagttgggag gcgggggcac ttgaacctgg 003920 003921 gaggtggagg ttgcagtgag ttgagatcat gccactgcac tccagcctgg gcaacagaat gagatccgtc t |
Predicted Small Protein
Name | NONHSAT134373_smProtein_3458:3679 |
Length | 74 |
Molecular weight | 8125.4251 |
Aromaticity | 0.041095890411 |
Instability index | 83.1219178082 |
Isoelectric point | 10.0609741211 |
Runs | 9 |
Runs residual | 0.0208572691118 |
Runs probability | 0.0248189365836 |
Amino acid sequence | MLFQACSSRPSLPDGRRPSAAMPVLHSTPALLTVMRVTAHAPSWNPACPILEPHLPPISL RVRKDYRDEIRQA |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLH HHLHHHHHHHHHL |
PRMN | - |
PiMo | - |