NONHSAT134532
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134532 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2627 nt |
Genomic location |
chr9+:123609572..123616080 |
Exon number |
2 |
Exons |
123609572..123609633,123613516..123616080 |
Genome context |
|
Sequence |
000001 GGCCATGCTG GATAAGGAGC TGGCTGCCTC TGTGAACATC CTACTCAAGG CATCTTCACT GTGCTGTACA TCCTTTTGAA 000080
000081 ATCCCAGAGA TCTTCAGTCT CCCTGTGGAT TAAGGAGATG TGCAGTATTT AAAGTGGCTT CAGGAAGGCA TGGAAGAGGA 000160 000161 CTGAGTGGGG AAAGCTTTTT GTGCATGCTG CTGGCTACCT CCAGCGGCTG CCTCCAGCCT CCATCAGCTG CACTCTGGGG 000240 000241 AAGAGGAGGC TGCCTTCTAC CTCCCAGCAT CTCTGGATTT CATGTTCCTG TCAGCACAGA GGAGCTAAAT GGCCTGTAGA 000320 000321 GGCTGAAGGT CTGAGGCTCC TAAAGCTGGA AGAAAAGGCT GGGCCAGTCA GGCCAAGCAA GAACACAGTG TAACTTGTCT 000400 000401 CTGAGTGCTT CATGGTTAAG GGGGCTAAGC AGGCACAAGG GCATGAGGAT GGTTATATGT ACAGACTGAG GGGAAGAAGC 000480 000481 AGTGAAGATG AGACTTGCCA TCTTCTTGAG TCAGTAGGCC TGCCTCAGGT GCCTAGGATG TAATTGCTCT GCTGCTTCTC 000560 000561 ATGGGGAGGA GTGGCCCTCA TGACCTTGTT TACCTGGAAG AGTGTGGGAT GAATGCCTCC TCCTATGGGG ACTCGCAAGT 000640 000641 GCTTTAGCAA AAGGATAAAT TGCTAATTGT GGCATTTCGT GGATCAGCAG GATTATTTCT CCTTGCTAAA GAGGATTTTG 000720 000721 TTGGTCCTGA ATTCTGAGGA GGTGGGACTA GGAATGGGCT CCATGAGCCT GTGTATGACT CAGGGAATAT TAGGACTTTG 000800 000801 GCACAGCCTC ATGGGTTGGG AGTAAGTCTT GGCTCTTCCC TAGCCTGAAT GACAGACATC AGATCATTCT GGTGCTTTGT 000880 000881 CCATGAAGAT GTAGATTCTG AGCCCACCCA ACTAATCTTT TCACTTGAGC ACAGAAACAG CCCCGGGAAT CGGACAGACC 000960 000961 CGTGTCTTTC AGGTTTGCTT CACAGAGCCC CAGGGGTTGA CAATAGGTGC CTTGGAGACT GCCTGCATGG GGATTTTTAA 001040 001041 AAAGCTTTCT TTGTTAAAGG TTTGTAAACC ACTCCTCTGA GCCTGTTTTC ATTTTATAGA TTATTCAGGG AACTGAACTG 001120 001121 CACAGAGATC CAGAAAGTGG GTAGTGCAGG CTGTAGTGCT GATAACTACT GTACTACTTG GATCTTTGTG CTCCCAAATA 001200 001201 CCAAATGGAA GAGGATCTCT GAGAGTCCTT TGCAAAGATC TTGTAGGGAC TTTAGGCTGG GGCCTTCGGA AAATTCCAGA 001280 001281 GGATTCCAAT GGAGATTTTG AGGGACTGAC TCAGAAGAAC AAAGAGAATG ATAATGGTGA TGTCCCTGCT TTTTACAACA 001360 001361 GATCATGTTC TGATATATAT GCAAATCTGT GTAAAGTAAA CCCTACCTAA AATGTACTGG GGACCCAAGA TGGACTGCCT 001440 001441 GTATTGCTTC CAGGATAAAG TCCAATTTCT AGCTCTGGTT TTTATAACCT TGCTTCAGCT CACCTTTTCC GTCATCATCC 001520 001521 CCTCCATCTC CTCTCCCACG CTGGGAAATG GATGGCTGCA CTATACTGTG TGATGTTATT GCTATGTTCA TGCCATCCCC 001600 001601 TCTGCCTGGA ATGCCCTTCT GCATGAATGC CTGTGAAATG TTGTTGCTCC TTTGTATGGC CTGGCTTCCG TGGTTGGCAG 001680 001681 GAATCTCTTC TTTCGTGGTA TTCCTGTCAT CTTTGTGCAT CACAGTCAGC TTTGTATTCC TAGCTTGTAA GCTACTTGAG 001760 001761 GATAGGGGCA TGTCTGAATC TATTTAATCT CTTGCACCTG TTTGGCAAAT TGATGTTTTA AGTATTTAAA TAACTAAAGC 001840 001841 TCTCTCTACA GTACATACTC ACTTTTGATT TATGAATTGG CAAAATTCAA CTTTTTTCCT TGAATATTCT TAAAGTGAGA 001920 001921 TGAATTCCAA AGGAGAGTGT TCTGTGTGTG GCCTTCATTG AGTGGTTTTC TGTTACCAGA AAGCTCTTGG TGGCCTTCCT 002000 002001 CTTCCCTGGT GTCAAGGTTG ACTGTTATAG GAAATGGGAG GGGAGAGGGC CGTTTCTGCC ACGCATTGTC CTAGGTTCTT 002080 002081 AACATTATTT AATCCTTATA ATGCAATGTT ATCCTCATTT TACAGATGAA ACCTGAGACC AAAGAACATG TAACACATAA 002160 002161 AGTACATTGC AGAGTTAGGA TGTGAACCCA ACTCTGATTC TAAACCTAAT GCTCTCACTC TTTCATTCAG AGGTTCAGTC 002240 002241 AGTTCTTTGT AGGCTGTAGA TCCAGAGAAG CTGCCGTAGC CAACAATGAA GTTGTTAGTT TTTAAAACAT CTATGTGGTA 002320 002321 AGTTGGTCTG GCACTTAAAA ATGTATTGTT TCCCAGGCAC GGTGGTTCAC ACCTGTAATC CCAGCATTTT GGGAGGCCGA 002400 002401 GGCAGGCGGA TCATTAGGTC AAAAGATTGA GACCATCCTG ACCAACATGG TGAAACCCCG TCTCTACTAA AAGTACAAAA 002480 002481 ATTAGCTGGG TGTGGTGGCG CATGCCTCTA GTCCCAGCTA CCTGGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG 002560 002561 GCAGAGGTTG CAGTGAGCCA AGATCATGCT ACTGCACTAC AGCCTGGCAA CAAAGCGAGA CTCTGTC |
Predicted Small Protein
Name | NONHSAT134532_smProtein_1547:1786 |
Length | 80 |
Molecular weight | 8676.5997 |
Aromaticity | 0.101265822785 |
Instability index | 82.5860759494 |
Isoelectric point | 4.01751708984 |
Runs | 9 |
Runs residual | 0.0263568579851 |
Runs probability | 0.0582543327641 |
Amino acid sequence | MDGCTILCDVIAMFMPSPLPGMPFCMNACEMLLLLCMAWLPWLAGISSFVVFLSSLCITV SFVFLACKLLEDRGMSESI |
Secondary structure | LLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLHHHEEHHHHHHHHH HHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiiiiii |